Inverted DNA Repeats: a Source of Eukaryotic Genomic Instability

REFERENCES

• Aguilera, A., and H. Klein. 1988. Genetic control of intrachromosomal recombination in Saccharomyces cerevisiae: I. Isolation and genetic characterization of hyper-recombination mutations. Genetics 119:779–790.
   Google Scholar
• Auerswald, E.-A., G. Ludwig, and H. Schaller. 1981. Structural analysis of Tn5. Cold Spring Harbor Symp. Quant. Biol. 45:107–113.
   PubMedGoogle Scholar
• Berg, D. E. 1989. Transposon Tn5, p. 185–210. In D. E. Berg and Μ. Μ. Howe (ed.), Mobile DNA. American Society for Microbiology, Washington, D.C.
   Google Scholar
• Boeke, J. D., F. LaCroute, and G. R. Fink. 1984. A positive selection for mutants lacking orotidine-5-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol. Gen. Genet. 197:345–346.
   PubMedGoogle Scholar
• Bonneaud, N., O. Ozier-Kalogeropulos, L. Gy, Μ. Labouesse, L. Minvielle-Sebastia, and F. LaCroute. 1991. A family of low and high copy replicative, integrative and single-stranded 5. cerevisiae/E. coli shuttle vectors. Yeast 7:609–615.
   PubMed Web of Science ®Google Scholar
• Burgers, P. Μ. J., R. A. Bambara, J. L. Campbell, L. Μ. S Chang, K. Μ. Downey, U. Hubscher, Μ. Y. W. T. Lee, S. Μ. Linn, A. G. So, and S. Spadar. 1990. Revised nomenclature for eukaryotic DNA polymerases. Eur. J. Biochem. 191:616–618.
   Google Scholar
• Chattoo, B. B., F. Sherman, D. A. Azubalis, T. Fjelstedt, D. Mehnert, and Μ. Ogur. 1979. Selection of lys2 mutants of yeast S. cerevisiae by utilization of alpha-aminoadipate. Genetics 93:51–65.
   PubMed Web of Science ®Google Scholar
• Chernoff, Y. O., and D. A. Gordenin. 1987. The phenotypic expression of yeast transposon insertion at LYS2 gene and of deletions resulting from imprecise excision. Genetika 23:30–40. (English translation.)
   PubMedGoogle Scholar
• Chernoff, Y. O., O. V. Kidgotko, O. Demberelijn, I. L. Luchnikova, S. P. Soldatov, V. Μ. Glaser, and D. A. Gordenin. 1984. Mitotic intragenic recombination in yeast Saccharomyces: marker effects on conversion and reciprocity of recombination. Curr. Genet. 9:31–37.
   PubMedGoogle Scholar
• Collins, J. 1980. The instability of palindromic DNA. Cold Spring Harbor Symp. Quant. Biol. 45:409–416.
   Google Scholar
• Collins, J., G. Volckaert, and P. Nevers. 1982. Precise and nearly precise excision of the symmetrical inverted repeats of Tn5: common features of recA-independent deletion events in E. coli. Gene 19:139–146.
   PubMedGoogle Scholar
• Deininger, P. L. 1989. SINEs: short interspersed repeated DNA elements in higher eucaryotes, p. 619–636. In D. E. Berg and Μ. Μ. Howe (ed.), Mobile DNA. American Society for Microbiology, Washington, D.C.
   Google Scholar
• Drake, J. W. 1991. A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl. Acad. Sci. USA 88:7160–7164.
   PubMed Web of Science ®Google Scholar
• Ehrlich, D. S. 1989. Illegitimate recombination in bacteria, p. 799–832. In D. E. Berg and Μ. Μ. Howe (ed.), Mobile DNA. American Society for Microbiology, Washington, D.C.
   Google Scholar
• Formosa, T., and B. Alberts. 1986. DNA synthesis dependent on genetic recombination: characterization of a reaction catalyzed by purified bacteriophage T4 proteins. Cell 47:793–806.
   PubMed Web of Science ®Google Scholar
• Gordenin, D. A., et al. Unpublished data.
   Google Scholar
• Gordenin, D. A., A. L. Malkova, A. Peterzen, V. N. Kulikov, Y. I. Pavlov, E. Perkins, and Μ. A. Resnick. 1992. Transposon Tn5 excision in yeast: the influence of DNA polymerases alpha, delta, epsilon and repair genes. Proc. Natl. Acad. Sci. USA 89:3785–3789.
   PubMedGoogle Scholar
• Gordenin, D. A., Y. Y. Proscyavichus, A. L. Malkova, Μ. V. Trofimova, and A. Peterzen. 1991. Yeast mutants with increased transposon Tn5 excision. Yeast 7:37–50.
   PubMedGoogle Scholar
• Gordenin, D. A., Μ. V. Trofimova, O. N. Shaburova, Y. I. Pavlov, Y. O. Chernoff, Y. V. Chekuolene, Y. Y. Proscyavichus, K. V. Sasnauskas, and A. A. Janulaitis. 1988. Precise excision of bacterial transposon Tn5 in yeast. Mol. Gen. Genet. 213:388–393.
   PubMedGoogle Scholar
• Hartwell, L., and D. Smith. 1985. Altered fidelity of mitotic chromosome transmission in cell cycle mutants of S. cerevisiae. Genetics 110:381–395.
   PubMed Web of Science ®Google Scholar
• Henderson, S. T., and T. D. Petes. 1993. Instability of a plasmid borne inverted repeat in Saccharomyces cerevisiae. Genetics 133:57–62.
   Google Scholar
• Hutchison, C. A., III, S. C. Hardies, D. D. Loeb, W. R. Shehee, and Μ. H. Edgell. 1989. LINEs and related retroposons: long interspersed sequences in the eucaryotic genome, p. 593–617. In D. E. Berg and Μ. Μ. Howe (ed.), Mobile DNA. American Society for Microbiology, Washington, D.C.
   Google Scholar
• Kleckner, N. 1989. Transposon Tn10, p. 227–268. In D. E. Berg and Μ. Μ. Howe (ed.), Mobile DNA. American Society for Microbiology, Washington, D.C.
   Google Scholar
• Larionov, V. L., et al. Submitted for publication.
   Google Scholar
• Moris, M., and S. Jinks-Robertson. 1991. Nucleotide sequence of the LYS2 gene of S. cerevisiae: homology to B. brevis tyrocidine synthetase 1. Gene 98:141–145.
   PubMedGoogle Scholar
• Morrison, A., H. Araki, A. B. Clark, R. K. Hamatake, and A. Sugino. 1990. A third essential DNA polymerase in S. cerevisiae. Cell 62:1143–1151.
   PubMed Web of Science ®Google Scholar
• Neil, D. L., A. Villasante, R. B. Fisher, D. Vetrie, B. Cox, and C. Tyler-Smith. 1990. Structural instability of human tandemly repeated DNA sequences cloned in yeast artificial chromosome vectors. Nucleic Acids Res. 18:1421–1428.
   PubMedGoogle Scholar
• Noskov, V. N., Μ. G. Tarutina, Y. I. Pavlov, V. N. Kulikov, Μ. V. Trofimova, A. V. Gorbacheva, Y. O. Chernoff, K. V. Sasnauskas, Μ. A. Neistat, I. I. Tolstorukov, and D. A. Gordenin. 1990. Development of intragenic mapping system for molecular genetic analysis of mutations in LYS2 gene of S. cerevisiae. Genetika 26:1161–1168. (English translation.)
   PubMedGoogle Scholar
• Ohshima, A., S. Inouye, and Μ. Inouye. 1992. In vivo duplication of genetic elements by the formation of stem-loop DNA without an RNA intermediate. Proc. Natl. Acad. Sci. USA 89:1016–1020.
   PubMedGoogle Scholar
• Petes, T. D., R. E. Malone, and L. S. Symington. 1991. Recombination in yeast, p. 407–521. In J. R. Broach, E. W. Jones, and J. R. Pringle (ed.), The molecular and cellular biology of the yeast Saccharomyces: genome dynamics, protein synthesis, and energetics. Cold Spring Harbor Laboratory Press, Plainview, N.Y.
   Google Scholar
• Ruskin, B., and G. R. Fink. 1993. Mutations in POL1 increase the mitotic instability of tandem inverted repeats in Saccharomyces cerevisiae. Genetics 133:43–56.
   Google Scholar
• Tindall, K. R., and L. F. Stankowski. 1989. Molecular analysis of spontaneous mutations at the gpt locus in Chinese hamster cells. Mutat. Res. 220:241–253.
   PubMed Web of Science ®Google Scholar
• Trinh, T. Q., and R. R. Sinden. 1991. Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli. Nature (London) 352:544–547.
   PubMedGoogle Scholar
• Vincent, A., and T. D. Petes. 1989. Mitotic and meiotic gene conversion of Ty elements and other insertions in Saccharomy-ces cerevisiae. Genetics 122:759–772.
   PubMedGoogle Scholar
• Voelkel-Meiman, K., and G. S. Roeder. 1991. A chromosome containing HOT1 preferentially receives information during mitotic interchromosomal gene conversion. Genetics 124:561–572.
   Google Scholar
• von Borstel, R. C., R. Ord, S. P. Steward, R. G. Ritzel, G. S.-F. Lee, U. G. G. Hennig, and E. A. Savage. The mutator mut7-1 of Saccharomyces cerevisiae. Mutat. Res., in press.
   Google Scholar
• Wang, T. S.-F. 1991. Eukaryotic DNA polymerases. Annu. Rev. Biochem. 60:513–552.
   PubMed Web of Science ®Google Scholar