Intron Definition in Splicing of Small Drosophila Introns

REFERENCES

• Aebi, M., H. Hornig, R. A. Padgett, J. Reiser, and C. Weissmann. 1986. Sequence requirements for splicing of higher eukaryotic nuclear pre-mRNAs. 47:555–565.
   Google Scholar
• Aebi, M., and C. Weismann. 1987. Precision and orderliness in splicing. Trends Genet. 3:102–107.
   Web of Science ®Google Scholar
• Bindereif, A., and M. R. Green. 1987. An ordered pathway of snRNP binding during mammalian pre-mRNA splicing complex assembly. EMBO J. 6:2415–2424.
   PubMed Web of Science ®Google Scholar
• Cheng, S. C., and J. Abelson. 1987. Spliceosome assembly in yeast. Genes Dev. 1:1014–1027.
   PubMed Web of Science ®Google Scholar
• Csank, C., F. M. Taylor, and D. W. Martindale. 1990. Nuclear pre-mRNA introns: analysis and comparison of intron sequences from Tetrahymena thermophila and other eukaryotes. Nucleic Acids Res. 18:5133–5141.
   PubMed Web of Science ®Google Scholar
• Dignam, J. D., R. M. Lebovitz, and R. G. Roeder. 1983. Accurate and efficient transcription initiation by RNA polymerase II in a soluble extract from mammalian nuclei. Nucleic Acids Res. 11:1475–1489.
   PubMed Web of Science ®Google Scholar
• Frendewey, D., and W. Keller. 1985. Stepwise assembly of a pre-mRNA splicing complex requires U-snRNPs and specific intron sequences. Cell 42:355–367.
   PubMed Web of Science ®Google Scholar
• Goguel, V., and M. Rosbash. 1993. Splice site choice and splicing efficiency are positively influenced by pre-mRNA intramolecular base pairing in yeast. Cell 72:893–902.
   PubMed Web of Science ®Google Scholar
• Guo, M., P. C. H. Lo, and S. M. Mount. 1993. Species-specific signals for the splicing of a short Drosophila intron in vitro. Mol. Cell. Biol. 13:1104–1118.
   PubMedGoogle Scholar
• Hawkins, J. D. 1988. A survey on intron and exon lengths. Nucleic Acids Res. 16:9893–9908.
   PubMed Web of Science ®Google Scholar
• Henkemyer, M. J., R. L. Bennett, F. B. Gertler, and F. M. Hoffmann. 1988. DNA sequence, structure, and tyrosine kinase activity of the Drosophila melanogaster Abelson proto-oncogene homolog. Mol. Cell. Biol. 8:843–853.
   PubMedGoogle Scholar
• Horabin, J. I., and P. Schedl. 1993. Regulated splicing of the Drosophila sex-lethal male exon involves a blockage mechanism. Mol. Cell. Biol. 13:1408–1414.
   PubMedGoogle Scholar
• Jacob, L., M. Opper, B. Metzroth, B. Phannavong, and B. M. Mechlen. 1987. Structure of the l(2)gl gene of Drosophila and delimitation of its tumor suppressor domain. Cell 50:215–225.
   PubMedGoogle Scholar
• Kidd, S., M. R. Kelley, and M. W. Young. 1986. Sequence of the notch locus of Drosophila melanogaster. relationship of the encoded protein to mammalian clotting and growth factors. Mol. Cell. Biol. 6:3094–3108.
   PubMed Web of Science ®Google Scholar
• Klinz, F. J., and D. Gallwitz. 1985. Size and position of intervening sequences are critical for the splicing of pre-mRNA in the yeast Saccharomyces cerevisiae. Nucleic Acids Res. 13:3791–3804.
   PubMedGoogle Scholar
• Konarska, M. M., and P. A. Sharp. 1986. Electrophoretic separation of complexes involved in pre-mRNA splicing. Cell 46:845–855.
   PubMed Web of Science ®Google Scholar
• Kontusaari, S., G. Tromp, H. Kuivaniemi, R. L. Ladda, and D. J. Prokop. 1990. Inheritance of an RNA splicing mutation (G+1 IVS 20) in the type III procollagen gene (COL3A1) in a family having aortic aneurysms and easy bruisability: phenotypic overlap between familial arterial aneurysms and Ehler-Danlos syndrome type IV. Am. J. Hum. Genet. 47:112–120.
   PubMed Web of Science ®Google Scholar
• Krawczak, M., J. Reiss, and D. N. Cooper. 1992. The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences. Hum. Genet. 90:41–54.
   PubMed Web of Science ®Google Scholar
• Kronert, W. A., K. A. Edwards, E. S. Roche, L. Wells, and S. I. Bernstein. 1991. Muscle specific accumulation of Drosophila myosin heavy chains: a splicing mutation in an alternative exon results in an isoform substitution. EMBO J. 10:2479–2488.
   PubMedGoogle Scholar
• Kurkulos, M., J. M. Weinberg, M. E. Pepling, and S. M. Mount. 1991. Polyadenylation in copia requires unusually distant upstream sequences. Proc. Natl. Acad. Sci. USA 88:3038–3042.
   PubMedGoogle Scholar
• Lammond, A. I., M. M. Konarska, and P. A. Sharp. 1987. A mutational analysis of spliceosomal assembly: evidence for splice site collaboration during spliceosome formation. Genes Dev. 1:532–543.
   PubMedGoogle Scholar
• Lichtinghagen, R., M. Stocker, R. Wittka, G. Bonheim, W. Stumer, A. Ferrus, and O. Pongs. 1990. Molecular basis of altered excitability in shaker mutants of Drosophila melanogaster. EMBO J. 9:4399–4407.
   PubMed Web of Science ®Google Scholar
• Moore, M. J., C. C. Query, and P. A. Sharp. 1993. Splicing of precursors to messenger RNAs by the spliceosome, p. 303–357. In R. Gesteland, and R. Atkins (ed.), The RNA world. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
   Google Scholar
• Mount, S. M., C. Burks, G. Hertz, G. D. Stormo, O. White, and C. Fields. 1992. Splicing signals in Drosophila: intron size, information content and consensus sequences. Nucleic Acids Res. 20:4255–4262.
   PubMed Web of Science ®Google Scholar
• Mount, S. M., M. M. Green, and G. M. Rubin. 1988. Partial revertants of the transposable element-associated suppressible allele white-apricot in Drosophila melanogaster. structure and responsiveness to genetic modifiers. Genetics 118:221–234.
   PubMedGoogle Scholar
• Mount, S. M. Personal communication.
   Google Scholar
• Ohno, K., and K. Suzuki. 1988. Multiple abnormal β-hexaminidase a chain mRNAs in a compound-heterozygous Ashkenazi Jewish patient with Tay-Sachs disease. J. Biol. Chem. 263:18563–18567.
   PubMedGoogle Scholar
• Patterson, D., R. Berger, J. Bleskan, D. Vannais, and J. Davidson. 1992. A single base change at a splice acceptor site leads to a truncated CAD protein in Urd—a mutant Chinese hamster ovary cells. Somatic Cell Mol. Gen. 18:65–75.
   PubMedGoogle Scholar
• Rio, D. C. 1988. Accurate and efficient pre-mRNA splicing in Drosophila cell-free extracts. Proc. Natl. Acad. Sci. USA 85:2904–2909.
   PubMedGoogle Scholar
• Robberson, B. L., G. J. Cote, and S. M. Berget. 1990. Exon definition may facilitate splice site selection in RNAs with multiple exons. Mol. Cell. Biol. 10:84–94.
   PubMed Web of Science ®Google Scholar
• Schulz, R. Personal communication.
   Google Scholar
• Seraphin, B., and M. Rosbash. 1989. Identification of functional U1 snRNA-premRNA complexes committed to spliceosome assembly and splicing. Cell 59:349–358.
   PubMed Web of Science ®Google Scholar
• Seraphin, B., and M. Rosbash. 1991. The yeast branch point sequence is not required for the formation of a stable U1 snRNP pre-mRNA complex and is recognized in the absence of U2 snRNA. EMBO J. 10:1209–1216.
   PubMedGoogle Scholar
• Spikes, D., and P. M. Bingham. 1992. Analysis of spliceosome assembly and the structure of a regulated intron in Drosophila in vitro splicing extracts. Nucleic Acids Res. 20:5719–5727.
   PubMedGoogle Scholar
• Sterner, D. A., and S. M. Berget. 1993. In vivo recognition of a vertebrate mini-exon as an exon-intron-exon unit. Mol. Cell. Biol. 13:2677–2687.
   PubMedGoogle Scholar
• Talerico, M., and S. M. Berget. 1990. Effect of 5′ splice site mutations on splicing of the preceding intron. Mol. Cell. Biol. 10:6299–6305.
   PubMed Web of Science ®Google Scholar
• Wieringa, B., E. Hofer, and C. Weissmann. 1984. A minimal intron length but no specific internal sequence is required for splicing the large rabbit β-globin intron. Cell 37:915–925.
   PubMed Web of Science ®Google Scholar
• Zachar, Z., D. Davidson, D. Garza, and P. M. Bingham. 1985. A detailed developmental and structural study of the transcriptional effects of insertion of the copia transposon into the white locus of Drosophila melanogaster. Genetics 111:495–515.
   PubMedGoogle Scholar