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Research Article

The Ubiquitous Potential Z-Forming Sequence of Eucaryotes, (dT-dG)n . (dC-dA)n, Is Not Detectable in the Genomes of Eubacteria, Archaebacteria, or Mitochondria

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Pages 3010-3013 | Received 09 Jan 1986, Accepted 22 Apr 1986, Published online: 31 Mar 2023

LITERATURE CITED

  • Craik, C. S., Q.-L. Choo, G. H. Swift, C. Quinto, R. J. MacDonald, and W. J. Rutter. 1984. Structure of two related rat pancreatic trypsin genes. J. Biol. Chem. 259:14255–14264.
  • Doolittle, W. F. 1985. Archaebacteria coming of age. Trends Genet. 1:268–269.
  • Fox, G. E., E. Stackebrandt, R. B. Hespeu, J. Gibson, J. Maniloff, T. A. Dyer, R. S. Wolfe, W. E. Balen, R. S. Tanner, L. J. Magrum, L. B. Zablen, R. Blakemore, R. Gupta, L. Bönen, B. J. Lewis, D. A. Stahl, K. R. Leuhrsen, K. N. Chen, and C. R. Woese. 1980. The phylogeny of prokaryotes. Science 209:457–463.
  • Garrett, R. A. 1985. The uniqueness of archaebacteria. Nature (London) 318:233–235.
  • Gross, D. S., S.-Y. Huang, and W. T. Garrard. 1985. Chromatin structure of the potential Z-forming sequence (dT-dG)n. (dC-dA)n: evidence for an “alternating-B” conformation. J. Mol. Biol. 183:251–265.
  • Hamada, H., M. G. Petřino, and T. Kakunaga. 1982. A novel repeated element with Z-DNA forming potential is widely found in evolutionarily diverse eukaryotic genomes. Proc. Natl. Acad. Sci. USA 79:6465–6469.
  • Hamada, H., M. G. Petrino, T. Kakunaga, M. Seidman, and B. D. Stoliar. 1984. Characterization of genomic poly(dT-dG) · poly(dC-dA) sequences: structure, organization, and conformation. Mol. Cell. Biol. 4:2610–2621.
  • Hamada, H., M. Seidman, B. H. Howard, and C. M. Gorman. 1984. Enhanced gene expression by the poly(dT-dG) · poly(dC-dA) sequence. Mol. Cell. Biol. 4:2622–2630.
  • Haniford, D. B., and D. E. PuUeyblank. 1983. The in vivo occurrence of Z-DNA. J. Biomol. Struct. Dynam. 1:593–609.
  • Haniford, D. B., and D. E. Pulleyblank. 1983. Facile transition of poly[d(TG) · d(CA)] into a left-handed helix in physiological conditions. Nature (London) 302:632–634.
  • Hentschel, C. C. 1982. Homocopolymer sequences in the spacer of a sea urchin histone gene repeat are sensitive to S1 nuclease. Nature (London) 295:714–716.
  • Kafatos, F. C., C. W. Jones, and A. Efstratiadis. 1979. Determination of nucleic acid sequence homologies and relative concentrations by a dot hybridization procedure. Nucleic Acids Res. 7:1541–1552.
  • Kaine, B. P., R. Gupta, and C. R. Woese. 1983. Putative introns in tRNA genes of prokaryotes. Proc. Natl. Acad. Sci. USA 80:3309–3312.
  • Kjems, J., and R. A. Garrett. 1985. An intron in the 23S ribosomal RNA gene of the archaebacterium Desulfurococcus mobilis. Nature (London) 318:675–677.
  • Kmiec, E. B., and W. K. Holloman. 1986. Homologous pairing of DNA molecules by Ustilago reel protein is promoted by sequences of Z-DNA. Cell 44:545–554.
  • Labarca, C., and K. Paigen. 1980. A simple, rapid, and sensitive DNA assay procedure. Anal. Biochem. 102:344–352.
  • McDoneu, M. W., M. N. Simon, and F. W. Studier. 1977. Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels. J. Mol. Biol. 110:119–146.
  • Miesfeld, R., M. Krystal, and N. Arnheim. 1981. A member of a new repeated sequence family which is conserved throughout eucaryotic evolution is found between the human δ and β globin genes. Nucleic Acids Res. 9:5931–5947.
  • Moritz, A., and W. Goebel. 1985. Characterization of the 7S RNA and its gene from halobacteria. Nucleic Acids Res. 13:6969–6979.
  • Nordheim, A., and A. Rich. 1983. The sequence (dC-dA)n (dG-dT)n forms left-handed Z-DNA in negatively supercoiled plasmids. Proc. Natl. Acad. Sci. USA 80:1821–1825.
  • Proudfoot, N. J., and T. Maniatis. 1980. The structure of a human ot-globin pseudogene and its relationship to a-globin gene duplication. Cell 21:537–544.
  • PuUeyblank, D. E., D. B. Haniford, and A. R. Morgan. 1985. A structural basis for SI nuclease sensitivity of double-stranded DNA. Cell 42:271–280.
  • Queen, C., and L. J. Korn. 1984. A comprehensive sequence analysis program for the IBM personal computer. Nucleic Acids Res. 12:581–599.
  • Radding, C. M. 1982. Homologous pairing and strand exchange in genetic recombination. Annu. Rev. Genet. 16:405–437.
  • Richards, J. E., A. C. Guliam, A. Shen, and P. W. Tucker. 1983. Unusual sequences in the murine immunoglobulin μ-δ heavy chain region. Nature (London) 306:483–487.
  • Santoro, C., F. Costanzo, and G. Ciliberto. 1984. Inhibition of eukaryotic tRNA transcription by potential Z-DNA sequences. EMBO J. 3:1553–1559.
  • Sapienza, C., and W. F. Doolittle. 1982. Repeated sequences in the genomes of halobacteria. Zbl. Bakt. Hyg., I Abt. Orig. C 3:120–127.
  • Shampay, J., J. W. Szostak, and E. H. Blackburn. 1984. DNA sequences of telomeres maintained in yeast. Nature (London) 310:154–157.
  • Singleton, C. K., M. W. Kilpatrick, and R. D. Wells. 1984. SI nuclease recognizes DNA conformational junctions between left-handed helical (dT-dG)n · (dC-dA)n and contiguous right-handed sequences. J. Biol. Chem. 259:1963–1967.
  • Slightom, J. L., A. E. Biechi, and O. Smithies. 1980. Human fetal Gγ- and Aγ-globin genes: complete nucleotide sequences suggest that DNA can be exchanged between these duplicated genes. Cell 21:627–638.
  • Stringer, J. R. 1982. DNA sequence homology and chromosomal deletion at a site of SV40 DNA integration. Nature (London) 296:363–366.
  • Sun, L., K. E. Paulson, C. W. Schmid, L. Kadyk, and L. Leinwand. 1984. Non-Alu family interspersed repeats in human DNA and their transcriptional activity. Nucleic Acids Res. 12:2669–2690.
  • Swift, G. H., C. S. Craik, S. J. Stary, C. Quinto, R. G. Lanate, W. J. Rutter, and R. J. MacDonald. 1984. Structure of the two related elas tase genes expressed in the rat pancreas. J. Biol. Chem. 259:14271–14278.
  • Szostak, J. W., T. L. Огг-Weaver, and R. J. Rothstein. 1983. The double-strand break repair model for recombination. Cell 33:25–35.
  • Tautz, D., and M. Renz. 1984. Simple DNA sequences of Drosophila virilis isolated by screening with RNA. J. Mol. Biol. 172:229–235.
  • Tautz, D., and M. Renz. 1984. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res. 12:4127–4138.
  • Thomas, J. R., R. I. Bolla, J. S. Rumbyrt, and D. Schlessinger. 1985. DNase I-resistant nontranscribed spacer segments of mouse ribosomal DNA contain poly(dG-dT) · poly(dA-dC). Proc. Natl. Acad. Sci. USA 82:7595–7598.
  • Treco, D., B. Thomas, and N. Arnheim. 1985. Recombination hot spot in the human β-globin gene cluster: meiotic recombination of human DNA fragments in Saccharomyces cerevisiae. Mol. Cell. Biol. 5:2029–2037.
  • Woese, C. R., and G. E. Fox. 1977. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl. Acad. Sci. USA 74:5088–5090.

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