Literature Cited
- Abovich, N., and M. Rosbash. 1984. Two genes for ribosomal protein 51 of Saccharomyces cerevisiae complement and contribute to the ribosomes. Mol. Cell. Biol. 4:1871-1879.
- Abraham, J., K. A. Nasmyth, J. N. Strathern, A. J. S. Klar, and J. B. Hicks. 1984. Regulation of mating type information in yeast. J. Mol. Biol. 176:307-331.
- Ares, M. 1986. U2 RNA from yeast is unexpectedly large and contains homology to vertebrate U4, U5, and U6 small nuclear RNAs. Cell 47:49-59.
- Arima, K., T. Oshima, I. Kaboto, N. Nakamura, T. Mizunaga, and A. Toh-E. 1983. The nucleotide sequence of the yeast PH05 gene: a putative precursor of repressible acid phosphatase contains a signal peptide. Nucleic Acids Res. 11:1657-1672.
- Astell, C. R., L. Ahlstrom-Jonesson, M. Smith, K. Tatchell, K. A. Nasmyth, and B. D. Hall. 1981. The sequence of the DNAs coding for the mating type loci of Saccharomyces cerevisiae. Cell 27:15-23.
- Bennetzen, J. L., and B. D. Hall. 1982. The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase I. J. Biol. Chem. 257:3018-3025.
- Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
- Bram, R. J., and R. D. Kornberg. 1985. Specific protein binding to far upstream activating sequences in polymerase II promoters. Proc. Natl. Acad. Sci. USA 82:43-47.
- Bram, R. J., and R. D. Kornberg. 1987. Isolation of a Saccharomyces cerevisiae centromere DNA-binding protein, its human homolog, and its possible role as a transcription factor. Mol. Cell. Biol. 7:403-409.
- Brand, A. H., L. Breeden, J. Abraham, R. Sternglanz, and K. Nasmyth. 1985. Characterization of a “silencer” in yeast: a DNA sequence with the properties opposite to those of a transcriptional enhancer. Cell 41:41-48.
- Brand, A. H., G. Micklem, and K. Nasmyth. 1987. A yeast silencer contains sequences that can promote autonomous plasmid replication and transcriptional activation. Cell 51:709-719.
- Buchman, A. R., W. J. Kimmerly, J. Rine, and R. D. Kornberg. 1988. Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae. Mol. Cell. Biol. 8:210-225.
- Burke, R. L., P. Tekamp-Olson, and R. Najaran. 1983. The isolation, characterization, and sequence of the pyruvate kinase gene of Saccharomyces cerevisiae. J. Biol. Chem. 258:2193-2201.
- Cohen, R., T. Yokoi, J. P. Holland, A. E. Pepper, and M. J. Holland. 1987. Transcription of the constitutively expressed yeast enolase gene ENO1 is mediated by positive and negative cis-acting regulatory sequences. Mol. Cell. Biol. 7:2753-2761.
- Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
- Dorn, A., J. Bollekens, A. Staub, C. Benoist, and D. Mathis. 1987. A multiplicity of CCAAT-box-binding proteins. Cell 50:863-872.
- Dynan, W. S., and R. Tjian. 1985. Control of eukaryotic messenger RNA synthesis by sequence-specific DNA-binding proteins. Nature 316:774-778.
- Feldman, J. B., J. B. Hicks, and J. R. Broach. 1984. Identification of sites required for repression of a silent mating type locus in yeast. J. Mol. Biol. 178:815-834.
- Georgiev, O. I., N. Nikolaev, A. A. Hadjiolov, K. G. Skryabin, V. M. Zakharyev, and A. A. Bayev. 1981. The structure of the yeast ribosomal RNA genes. 4. Complete sequence of the 25S rRNA gene from Saccharomyces cerevisiae. Nucleic Acids Res. 9:6953-6958.
- Hager, D. A., and R. R. Burgess. 1980. Elution of proteins from sodium dodecyl sulfate-polyacrylamide gels, removal of sodium dodecyl sulfate, and renaturation of enzymatic activity: results with sigma subunit of Escherichia coli RNA polymerase, wheat germ DNA topoisomerase, and other enzymes. Anal. Biochem. 109:76-86.
- Herskowitz, I., and Y. Oshima. 1981. Control of cell type in Saccharomyces cerevisiae: mating type and mating interconversion, p. 181-209. In J. N. Strathern, E. W. Jones, and J. R. Broach (ed.), The molecular biology of the yeast Saccharomyces cerevisiae: life cycle and inheritance. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
- Huet, J., P. Cottrell, M. Cool, M.-L. Vignais, D. Thiele, C. Marck, J.-M. Buhler, A. Sentenac, and P. Fromageot. 1985. A general upstream-binding factor for genes of the yeast translation apparatus. EMBO J. 4:3539-3547.
- Huet, J., and A. Sentenac. 1987. TUF, the DNA-binding factor specific for UASrpg upstream activating sequences: identification of the protein and its DNA-binding domain. Proc. Natl. Acad. Sci. USA 84:3648-3652.
- Ito, H., Y. Fukuda, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153:163-168.
- Ivy, J. M., A. J. S. Klar, and J. B. Hicks. 1986. Cloning and characterization of four SIR genes from Saccharomyces cerevisiae. Mol. Cell. Biol. 6:688-702.
- Jones, K. A., J. T. Kadonaga, P. J. Rosenfeld, T. J. Kelly, and R. Tjian. 1987. A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication. Cell 48:79-89.
- Kadonaga, J. T., and R. Tjian. 1986. Affinity purification of sequence-specific DNA binding proteins. Proc. Natl. Acad. Sci. USA 83:5889-5893.
- Kimmerly, W., A. R. Buchman, R. D. Kornberg, and J. Rine. 1988. Roles of two DNA binding factors in replication, segregation, and transcriptional repression mediated by a yeast silencer. EMBO J. 7:2241-2253.
- Leer, R. J., M. M. C. van Raamsdonsk-Duin, W. H. Mager, and R. Planta. 1985. Conserved sequences upstream of yeast ribosomal protein genes. Curr. Genet. 9:273-277.
- Lorch, Y., and R. D. Kornberg. 1985. A region flanking the GAL7 gene and a binding site for GAL4 protein as upstream activating sequences in yeast. J. Mol. Biol. 186:821-824.
- Lue, N. F., and R. D. Kornberg. 1987. Accurate initiation at RNA polymerase II promoters in extracts from Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 84:8839-8843.
- Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
- Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
- Molenaar, C. M. T., L. P. Woudt, A. E. M. Jansen, W. H. Mager, R. J. Planta, D. M. Donovan, and N. J. Pearson. 1984. Structure and organization of two linked ribosomal protein genes in yeast. Nucleic Acid Res. 12:7345-7358.
- Ogden, J. E., C. Stanway, S. Kim, J. Mellor, A. J. Kingsman, and S. M. Kingsman. 1986. Efficient expression of the Saccharomyces cerevisiae PGK gene depends on an upstream activating sequence but does not require TATA sequences. Mol. Cell. Biol. 6:4335-4343.
- Oikarinen, J., A. Hatamochi, and B. de Crombrugghe. 1987. Separate binding sites for nuclear factor 1 and a CCAAT DNA binding factor in the mouse α2 (I) collagen promoter. J. Biol. Chem. 262:11064-11070.
- Parker, R., P. G. Siliciano, and C. Guthrie. 1987. Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA. Cell 49:229-239.
- Rine, J., and I. Herskowitz. 1987. Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae. Genetics 116:9-22.
- Rosales, R., M. Vigneron, M. Macchi, I. Davidson, J. H. Xiao, and P. Chambon. 1987. In vitro binding of cell-specific and ubiquitous nuclear proteins to the octamer motif of the SV40 enhancer and related motifs present in other promoters and enhancers. EMBO J. 6:3015-3025.
- Rotenberg, M. O., and J. L. Woolford. 1986. Tripartite upstream promoter element essential for expression of Saccharomyces cerevisiae ribosomal protein genes. Mol. Cell. Biol. 6:674-687.
- Shampay, J., J. W. Szostak, and E. H. Blackburn. 1984. DNA sequences of telomeres maintained in yeast. Nature (London) 310:154-157.
- Shore, D., and K. Nasmyth. 1987. Purification and cloning of a DNA-binding protein that binds to both silencer and activator elements. Cell 51:721-732.
- Shore, D., M. Squire, and K. A. Nasmyth. 1984. Characterization of two genes required for position effect control of mating type. EMBO J. 3:2817-2823.
- Shore, D., D. J. Stillman, A. H. Brand, and K. A. Nasmyth. 1987. Identification of silencer binding proteins from yeast: possible roles in SIR control and DNA replication. EMBO J. 6:461-467.
- Siliciano, P. G., and K. Tatchell. 1984. Transcription and regulatory signals at the mating type locus in yeast. Cell 37:969-978.
- Singh, H., R. Sen, D. Baltimore, and P. A. Sharp. 1986. A nuclear factor that binds to a conserved sequence motif in transcriptional control elements of immunoglobulin genes. Nature (London) 319:154-158.
- Teem, J. L., N. Abovich, N. F. Kaufer, W. F. Schwindinger, J. R. Warner, A. Levy, J. Woolford, R. J. Leer, M. C. van Raamsdonk-Duin, W. H. Wagner, R. J. Planta, L. Schultz, J. D. Friesen, H. Fried, and M. Rosbash. 1984. A comparison of yeast ribosomal protein gene DNA sequences. Nucleic Acids Res. 12:8295-8312.
- Toda, T., S. Cameron, P. Sass, M. Zoller, J. D. Scott, B. McMullen, M. Hurwitz, E. G. Krebs, and M. Wigler. 1987. Cloning and characterization of BCY1, a locus encoding a regulatory subunit of the cyclic AMP-dependent protein kinase in Saccharomyces cerevisiae. Mol. Cell. Biol. 7:1371-1377.
- Uemura, H., T. Shiba, M. Paterson, Y. Jigami, and H. Tanaka. 1986. Identification of a sequence containing the positive regulatory region of Saccharomyces cerevisiae gene ENO1. Gene 45:67-75.
- Vignais, M.-L., L. P. Woudt, G. M. Wassenaar, W. H. Mager, A. Sentenac, and R. Planta. 1987. Specific binding of TUF factor to upstream activation sites of yeast ribosomal protein genes. EMBO J. 6:1451-1457.
- Woudt, L. P., A. B. Smit, W. H. Mager, and R. Planta. 1986. Conserved sequence elements upstream of the gene encoding yeast ribosomal protein L25 are involved in transcriptional activation. EMBO J. 5:1037-1040.
- Wray, W., T. Boulikas, V. P. Wray, and R. Hancock. 1981. Silver staining of proteins in polyacrylamide gels. Anal. Biochem. 118:197-203.