Dynamic Interaction between a Drosophila Transcription Factor and RNA Polymerase II

LITERATURE CITED

• Briggs, M. R., J. T. Kadonaga, S. P. Bell, and R. Tjian. 1986. Purification and biochemical characterization of the promoter-specific transcription factor, Spl. Science 234:47–52.
   PubMed Web of Science ®Google Scholar
• Burton, Z. F., M. Killeen, M. Sopota, L. G. Ortolan, and J. Greenblatt. 1988. RAP30/74: a general initiation factor that binds to RNA polymerase II. Mol. Cell. Biol. 8:1602–1613.
   PubMedGoogle Scholar
• Burton, Z. F., L. G. Ortolan, and J. Greenblatt. 1986. Proteins that bind to RNA polymerase II are required for accurate initiation of transcription at the adenovirus 2 major late promoter. EMBO J. 5:2923–2930.
   PubMed Web of Science ®Google Scholar
• Cai, H., and D. S. Luse. 1987. Transcription initiation by RNA polymerase II in vitro: properties of preinitiation, initiation, and elongation complexes. J. Biol. Chem. 262:298–304.
   PubMed Web of Science ®Google Scholar
• Cai, H., and D. S. Luse. 1987. Variations in template protection by the RNA polymerase II transcription complex during the initiation process. Mol. Cell. Biol. 7:3371–3379.
   PubMedGoogle Scholar
• Carthew, R. W., L. A. Chodosh, and P. A. Sharp. 1985. An RNA polymerase II transcription factor binds to an upstream element in the adenovirus major late promoter. Cell 43:439–448.
   PubMed Web of Science ®Google Scholar
• Chamberlin, M. J., J.-F. Briat, R. L. Dedrick, M. M. Hanna, C. M. Kane, J. R. Levin, R. L. Reynolds, and M. C. Schmidt. 1985. Factors involved in elongation and termination of bacterial and mammalian transcription, p. 47–73. In P. Marks (ed.), Genetics, cell differentiation and cancer. Academic Press, Inc., New York.
   Google Scholar
• Coulter, D. E., and A. L. Greenleaf. 1985. A mutation in the largest subunit of RNA polymerase II alters RNA chain elongation in vitro. J. Biol. Chem. 260:13190–13198.
   PubMedGoogle Scholar
• Dedrick, R. L., C. M. Kane, and M. J. Chamberlin. 1987. Purified RNA polymerase II recognizes specific termination sites during transcription in vitro. J. Biol. Chem. 262:9098–9108.
   PubMedGoogle Scholar
• Dignam, J. D., P. L. Martin, B. S. Shastry, and R. G. Roeder. 1983. Eukaryotic gene transcription with purified components. Methods Enzymol. 101:582–598.
   PubMed Web of Science ®Google Scholar
• Dynan, W. S., and R. Tjian. 1985. Control of eukaryotic RNA synthesis by sequence-specific DNA-binding proteins. Nature (London) 316:774–778.
   PubMed Web of Science ®Google Scholar
• Fire, A., M. Samuels, and P. A. Sharp. 1984. Interactions between RNA polymerase II, factors, and template leading to accurate transcription. J. Biol. Chem. 259:2509–2516.
   PubMed Web of Science ®Google Scholar
• Flores, O., E. Maldonado, Z. Burton, J. Greenblatt, and D. Reinberg. 1988. Factors involved in specific transcription by mammalian RNA polymerase II: RNA polymerase II-associating protein 30 is an essential component of transcription factor Hand F. J. Biol. Chem. 263:10812–10816.
   PubMedGoogle Scholar
• Greenblatt, J., and J. Li. 1981. Interaction of the sigma factor and the nusA gene protein of E. coli with RNA polymerase in the initiation-termination cycle of transcription. Cell 24:421–428.
   PubMed Web of Science ®Google Scholar
• Greenleaf, A. L., R. S. Jokerst, W. A. Zehring, B. J. Hamilton, J. R. Weeks, A. E. Sluder, and D. H. Price. 1987. Drosophila RNA polymerase II: genetics and in vitro transcription, p. 459–463. In W. S. Reznikoff et al. (ed.), RNA polymerase and the regulation of transcription. Elsevier/North-Holland Publishing Co., New York.
   Google Scholar
• Hancock, K., and V. C. W. Tsang. 1983. India ink staining of proteins on nitrocellulose paper. Anal. Biochem. 133:157–162.
   PubMed Web of Science ®Google Scholar
• Hawley, D. K., and R. G. Roeder. 1985. Separation and partial characterization of three functional steps in transcription initiation by human RNA polymerase Iand I. J. Biol. Chem. 260:8163–8172.
   PubMedGoogle Scholar
• Helmann, J. D., and M. J. Chamberlin. 1988. Structure and function of bacterial sigma factors. Annu. Rev. Biochem. 57:839–872.
   PubMed Web of Science ®Google Scholar
• Horikoshi, M., K. Sekimizu, and S. Natori. 1984. Analysis of the stimulatory factor of RNA polymerase II in the initiation and elongation complex. J. Biol. Chem. 259:608–611.
   PubMed Web of Science ®Google Scholar
• Horwitz, R. J., J. Li, and J. Greenblatt. 1987. An elongation control particle containing the N gene transcriptional antitermination protein of bacteriophage lambda. Cell 51:631–641.
   PubMedGoogle Scholar
• Kadesch, T. R., and M. J. Chamberlin. 1982. Studies of in vitro transcription by calf thymus RNA polymerase II using a novel duplex DNA template. J. Biol. Chem. 257:5286–5295.
   PubMed Web of Science ®Google Scholar
• Kane, C. M.. 1988. Renaturase and ribonuclease H: a novel mechanism that influences transcript displacement by RNA polymerase II in vitro. Biochemistry 27:3187–3196.
   PubMedGoogle Scholar
• Kassavetis, G. A., and M. J. Chamberlin. 1981. Pausing and termination of transcription within the early region of bacteriophage T7 DNA in vitro. J. Biol. Chem. 256:2777–2786.
   Google Scholar
• Levin, J. R., and M. J. Chamberlin. 1987. Mapping and characterization of transcriptional pause sites in early genetic region of bacteriophage T7. J. Mol. Biol. 196:61–84.
   PubMedGoogle Scholar
• Luse, D. S., T. Kochel, E. D. Keumpel, J. A. Coppola, and H. Cai. 1987. Transcription initiation by RNA polymerase II in vitro: at least two nucleotides must be added to form a stable ternary complex. J. Biol. Chem. 262:289–297.
   PubMed Web of Science ®Google Scholar
• Matsui, J., J. Segall, P. A. Weil, and R. G. Roeder. 1980. Multiple factors required for accurate initiation of transcription by purified RNA polymerase Iand I. J. Biol. Chem. 255:11992–11996.
   PubMed Web of Science ®Google Scholar
• McKnight, S., and R. Tjian. 1986. Transcriptional selectivity of viral genes in mammalian cells. Cell 46:795–805.
   PubMed Web of Science ®Google Scholar
• Mitchell, P. J., C. Wang, and R. Tjian. 1987. Positive and negative regulation of transcription in vitro: enhancer-binding protein AP-2 is inhibited by SV40 T antigen. Cell 50:847–861.
   PubMed Web of Science ®Google Scholar
• Morrissey, J. H.. 1981. Silver stain for proteins in polyacrylamide gels: a modified procedure with enhanced uniform sensitivity. Anal. Biochem. 117:307–310.
   PubMed Web of Science ®Google Scholar
• Parker, C. S., and J. Topol. 1984. A Drosophila RNA polymerase II transcription factor contains a promoter-region-specific DNA-binding activity. Cell 36:357–369.
   PubMed Web of Science ®Google Scholar
• Price, D. H., A. E. Sluder, and A. L. Greenleaf. 1987. Fractionation of transcription factors for RNA polymerase II from Drosophila Kc cell nuclear extracts. J. Biol. Chem. 262:3244–3255.
   PubMedGoogle Scholar
• Rappaport, J., D. Reinberg, R. Zandomen, and R. Weinmann. 1987. Purification and functional characterization of transcription factor SII from calf thymus: role in RNA polymerase II elongation. J. Biol. Chem. 262:5227–5232.
   PubMedGoogle Scholar
• Reinberg, D., and R. G. Roeder. 1987. Factors involved in specific transcription by mammalian RNA polymerase II: purification and functional analysis of initiation factors IIB and IIand E. J. Biol Chem. 262:3310–3321.
   PubMed Web of Science ®Google Scholar
• Reinberg, D., and R. G. Roeder. 1987. Factors involved in specific transcription by mammalian RNA polymerase II: transcription factor IIS stimulates elongation of RNA chains. J. Biol. Chem. 262:3331–3337.
   PubMed Web of Science ®Google Scholar
• Reines, D., D. Wells, M. J. Chamberlin, and C. M. Kane. 1987. Identification of intrinsic termination sites in vitro for RNA polymerase II within eukaryotic gene sequences. J. Mol. Biol. 196:299–312.
   PubMedGoogle Scholar
• Samuels, M., A. Fire, and P. A. Sharp. 1982. Separation and characterization of factors mediating accurate transcription by RNA polymerase Iand I. J. Biol. Chem. 257:14419–14427.
   PubMed Web of Science ®Google Scholar
• Sawadogo, M., and R. G. Roeder. 1985. Interaction of a gene specific transcription factor with the adenovirus major late promoter upstream of the TATA box region. Cell 43:165–175.
   PubMed Web of Science ®Google Scholar
• Sekeris, C. E., W. Schmid, and W. Roewekamp. 1972. Stimulation of in vitro transcription by ribonuclease H (hybridase). FEBS Lett. 24:27–31.
   PubMedGoogle Scholar
• Sekimizu, K., N. Kobayashi, D. Mizuno, and S. Natori. 1976. Purification of a factor from Ehrlich ascites tumor cells specifically stimulating RNA polymerase II. Biochemistry 15:5064–5070.
   PubMedGoogle Scholar
• Sluder, A. E., D. H. Price, and A. L. Greenleaf. 1988. Elongation by Drosophila RNA polymerase II: transcription of 3′-extended templates. J. Biol. Chem. 263:9917–9925.
   PubMedGoogle Scholar
• Sopta, M., R. W. Carthew, and J. Greenblatt. 1985. Isolation of three proteins that bind to mammalian RNA polymerase I and I. J. Biol. Chem. 260:10353–10360.
   PubMedGoogle Scholar
• Tsai, S. Y., P. Dicker, P. Fang, M.-J. Tsai, and B. W. O'Malley. 1984. Generation of monoclonal antibodies to RNA polymerase II for the identification of transcriptional factors. J. Biol. Chem. 259:11587–11593.
   PubMedGoogle Scholar
• Tsai, S. Y., I. Sagami, H. Wang, M.-J. Tsai, and B. W. O'Malley. 1987. Interactions between a DNA-binding transcription factor (COUP) and a non-DNA binding factor (S300-II). Cell 50:701–709.
   PubMedGoogle Scholar
• Tsai, S. Y., M.-J. Tsai, L. E. Kops, P. P. Minghetti, and B. W. O'Malley. 1981. Transcription factors from oviduct and HeLa cells are similar. J. Biol. Chem. 256:13055–13059.
   PubMedGoogle Scholar
• Weeks, J. R., D. E. Coulter, and A. L. Greenleaf. 1982. Immunological studies of RNA polymerase II using antibodies to subunits of Drosophila and wheat germ enzyme. J. Biol. Chem. 257:5884–5891.
   PubMed Web of Science ®Google Scholar
• Yager, T. D., and P. H. von Hippel. 1987. Transcript elongation and termination in Escherichia coli, p. 1241–1275. In F. C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, and H. Schaechter (ed.), Escherichia coli and Salmonella typhimurium: cellular and molecular biology, vol. 2. American Society for Microbiology, Washington, D.C.
   Google Scholar
• Zheng, X.-M., V. Moncollin, J.-M. Egly, and P. Chambon. 1987. A general transcription factor forms a stable complex with RNA polymerase B (II). Cell 50:361–368.
   PubMed Web of Science ®Google Scholar