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Original Articles

The Effect of Protozoa on the Composition of Rumen Bacteria in Cattle Using 16S rRNA Gene Clone Libraries

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Pages 499-506 | Received 08 Sep 2004, Accepted 29 Nov 2004, Published online: 22 May 2014

  • 1) Hungate, R. E., The rumen protozoa. In “The Rumen and Its Microbes”, Academic Press, New York, pp. 91–147 (1966).
  • 2) Clarke, R. T. J., Protozoa in the rumen ecosystem. In “Microbial Ecology of the Gut”, eds. Clarke, R. T. J., and Bauchop, T., Academic Press, London, pp. 251–275 (1977).
  • 3) Birds, S. H., Nolan, J. V., and Leng, R. A., The microbial metabolism and its regulation. In “The Rumen Ecosystem”, eds. Hoshino, S., Onodera, R., Minato, H., and Itabashi, H., Japan Scientific Societies Press, Tokyo, pp. 151–160 (1990).
  • 4) Takenaka, A., and Itabashi, H., Changes in the population of some functional groups of rumen bacteria including methanogenic bacteria by changing the rumen ciliates in calves. J. Gen. Appl. Microbiol., 41, 377–387 (1995).
  • 5) Jouany, J. P., Demeyer, D. I., and Grain, J., Effect of defaunating the rumen. Anim. Feed Sci. Technol., 21, 229–265 (1988).
  • 6) Ushida, K., Tokura, M., Takenaka, A., and Itabashi, H., Ciliate protozoa and ruminal methanogenesis. In “Rumen Microbes and Digestive Physiology in Ruminants”, eds. Onodera, R., Itabashi, H., Ushida, K., Yano, H., and Sasaki, Y., Japan Scientific Societies Press, Tokyo, pp. 209–220 (1997).
  • 7) Arakaki, C., Mitsumori, H., Itabashi, H., Shirasaka, S., and Minato, H., Influence of the presence of protozoa on the rumen microbial population of cattle. J. Gen. Appl. Microbiol., 40, 215–226 (1995).
  • 8) Amann, R. I., Ludwig, W., and Schleifer, K. H., Phylogenetic identification and in situ detection of microbial cells without cultivation. Microbiol. Rev., 59, 143–149 (1995).
  • 9) Tajima, K., Aminov, R. I., Nagamine, T., Ogata, K., Nakamura, M., Matsui, H., and Benno, Y., Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries. FEMS Microbial. Ecol., 29, 159–169 (1999).
  • 10) Tajima, K., Arai, S., Ogata, K., Nagamine, T., Matsui, H., Nakamura, M., Matsui, H., and Benno, Y., Rumen bacterial community transition during adaptation to high-grain diet. Anaerobe, 6, 273–284 (2000).
  • 11) Whitford, M. F., Foster, R. J., Beard, C. E., Gong, J., and Teather, R. M., Phylogenetic analysis of rumen bacterial comparative sequence analysis of cloned 16S rRNA genes. Anaerobe, 4, 153–163 (1998).
  • 12) Itabashi, H., Kobayashi, T., and Matsumoto, M., The effect of rumen ciliate protozoa on energy metabolism and some constituents in ruminal fluid and blood plasma of goat. Jpn. J. Zootech. Sci., 55, 248–256 (1984).
  • 13) Karnati, S. K. R., Yu, Z., Sylvester, J. T., Dehority, B. A., Morrison, M., and Frikins, J. K., Technical note: Specific PCR amplification of protozoal 18S rDNA sequences from DNA extracted from ruminal samples of cow. J. Anim. Sci., 81, 812–815 (2003).
  • 14) Medlin, L., Elwood, H. J., Stickel, S., and Sogin, M. L., The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 71, 491–499 (1988).
  • 15) Lane, D. J., 16S/23S rRNA sequencing. In “Nucleic Acid Techniques in Bacterial Systematics”, eds. Stackebrandt, E., and Goodfellow, M., John Wiley and Sons, New York, pp. 115–175 (1991).
  • 16) Bonnet, R., Suau, A., Dore, J., Gibson, G. R., and Collins, M. D., Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs. Int. J. Syst. Evol. Microbiol., 52, 757–763 (2002).
  • 17) Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J., Basic local alignment search tool. J. Mol. Biol., 215, 403–410 (1990).
  • 18) Maidak, B. L., Cole, J. R., Parker, C. T., Jr., Garrity, G. M., Larsen, N., Li, B., Lilburn, T. G., McCaughey, M. J., Olsen, G. J., Overbeek, R., Pramanik, S., Schmidt, T. M., Tiedje, J. M., and Woese, C. R., A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res., 27, 171–173 (1999).
  • 19) Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G., The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 15, 4876–4882 (1997).
  • 20) Saitou, N., and Nei, M., The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406–425 (1987).
  • 21) Stackebrandt, E., and Goebel, B. M., Taxonomic notice: A place for DNA–DNA reassociation and 16S rDNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol., 44, 846–849 (1994).
  • 22) Singleton, D. R., Furlong, M. A., Rathbun, S. L., and Whitman, W. B., Quantitative comparisons of 16S rDNA sequence libraries from environmental samples. Appl. Environ. Microbiol., 67, 4373–4376 (2001).
  • 23) Felsenstein, J., PHYLIP (phylogenetic inference package) version 3.5c, University of Washington, Seattle (1993).
  • 24) Laser, T. D., Amenuvor, J. Z., Jensen, T. K., Lindecrona, R. H., Boye, M., and Moller, K., Culture-independent analysis of gut bacteria: The pig gastrointestinal tract microbiota revisited. Appl. Environ. Microbiol., 68, 673–690 (2002).
  • 25) Itabashi, H., and Katada, M., Studies on nutritional significance of rumen ciliate protozoa in cattle. II. Influence of protozoa on amino acid concentrations in some rumen fractions and blood plasma. Bull. Tohoku Natl. Agric. Exp. Stn., 52, 169–176 (1976).
  • 26) Whitelaw, F. G., Eadie, J. M., Bruce, L. E., and Shand, W. J., Methane formation in faunated and ciliate-free cattle and its relationship with rumen volatile fatty acid proportions. Brit. J. Nutr., 52, 261–275 (1984).
  • 27) Williams, A. G., and Coleman, G. S., The rumen protozoa. In “The Rumen Microbial Ecosystem”, ed. Hobson, P. N., Elsevier Science, London, New York, pp. 77–128 (1988).
  • 28) Veria, D. M., The role of ciliate protozoa in nutrition of the ruminant. J. Anim. Sci., 63, 1547–1560 (1986).
  • 29) Jouany, J. P., and Martin, C., Effect of protozoa in plant cell wall and starch digestion in the rumen. In “Rumen Microbes and Digestive Physiology in Ruminants”, eds. Onodera, R., Itabashi, H., Ushida, K., Yano, H., and Sasaki, Y., Japan Scientific Societies Press, Tokyo, pp. 199–208 (1997).
  • 30) Ushida, K., Jouany, J. P., and Demeyer, D. I., Effects of presence or absence of rumen protozoa on the efficiency of utilization of concentrate and fibrous feeds. In “Physiological Aspects of Digestion and Metabolism in Ruminants”, eds. Tsuda, T., Sasaki, Y., and Kawashima, R., Academic Press, New York, pp. 625–654 (1991).
  • 31) Takenaka, A., D’Silva, C. G., Kudo, H., Itabashi, H., and Cheng, K.-J., Molecular cloning, expression, and characterization of an endo-b-1,4-glucanase cDNA from Epidinium caudatum. J. Gen. Appl. Microbiol., 45, 57–61 (1999).

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