12
Views
0
CrossRef citations to date
0
Altmetric
Original Articles

Tandem repeats in the evolution of polyploid wheats and Aegilops section Sitopsis

Pages 231-240 | Published online: 14 Mar 2013

References

  • Flavell, R. B. 1982. Amplification, deletion and rearrangement: major sources of variation during species divergence. In: Dover, G. A., Flavell, R. B., eds. Genome evolution. Academic Press, London, pp. 291-311.
  • Friebe, B., Qi, L. L., Nasuda, S., Zhang, P., Tuleen, N. A., Gill, B. S. 2000. Development of a complete set of Triticum aestivum-Aegilops speltoides chromosome addition lines. Theor. Appl. Genet.101: 51-58.
  • Ganal, M. W., Lapitan, N. L. V., Tanksley, S. D. 1991. Macro-structure of the tomato telomeres. Plant Cell3: 87-94.
  • Salina, E. A., Numerova, O. M., Ozkan, H., Feldman, M. 2004b. Alterations in subtelomeric tandem repeats during early stages of allopolyploidy in wheat. Genome47: 860-867.
  • Salina, E. A., Lim, Y. K., Badaeva, E. D., Scherban, A. B., Adonina, I. G., Amosova, A. V., Samatadze, T. E., Vatolina, T. Y., Zoshchuk, S. A., Leitch, A. 2006. Genome organization and evolution in polyploid wheats and the Sitopsis group of Aegilops assessed by RAPD analysis and FISH with two families of subtelomeric repeats. Genome49: 1023-1035
  • Sharma, S., Raina, S. N. 2005. Organization and evolution of highly repeated satellite DNA sequences in plant chromosomes. Cytogenet Genome Res.109: 15-26.
  • Giorgi, D, D'Ovidio, R, Tanzarella, O. A., Ceoloni, C., Porceddu, E. 2003. Isolation and characterization of S genome specific sequences from Aegilops sect. sitopsis species. Genome46: 478-489.
  • Grellet, F., Delcasso, D., Panabieres, F., Delseny, M. 1986. Organization and evolution of higher plant alphoid-like satellite DNA sequence. J. Mol. Biol.187: 495-507.
  • Hourcade, D., Dressler, D., Wolfson, J. 1973. The amplification of ribosomal RNA genes involving a rolling circle intermediate. Proc. Natl. Acad. Sci. USA70: 2926-2930.
  • Huang, S., Sirikhachornkit, A., Su, X., Faris, J., Gill, B., Haselkorn, R., Gornicki, P. 2002. Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploids wheat. Proc. Natl. Acad. Sci. USA99: 8133-8138.
  • Hudakova, S., Michalek, W., Presting, G. G., ten Hoopen, R., dos Santos, K., Jasencakova, Z., Schubert, I. 2001. Sequence organization of barley centromeres. Nucl. Acids Res.29: 5029-5035.
  • Hutchinson, J., Lonsdale, D. M. 1982. The chromosomal distribution of cloned highly repetitive sequences from hexaploid wheat. Heredity48: 371-376.
  • Jarman, A. P., Wells, R. A. 1989. Hyrpervariable minisatellites: recombinators or innocent bystanders? Trends Genet.5: 367-371.
  • Jiang, J., Birchler, J. A., Parrott, W. A., Dawe, R. K. 2003. A molecular view of plant centromeres. Trends Plant Sci.8: 570-575.
  • Jones, R. S., Potter, S. S. 1985. Characterization of cloned human alphoid satellite with an unusual monomeric construction: evidence for enrichment in HeLa small polydispersed circular DNA. Nucleic Acids Res.13: 1027-1042.
  • Kilian, A., Kleinhofs, A. 1992. Cloning and mapping of telomere-associated sequences from Hordeum vulgare L. Mol. Gen. Genet.235: 153-156.
  • Kishii, M., Tsujimoto, H. 2002. Genus-specific localization of the TaiI family of tandem-repetitive sequences in either the centromeric or subtelomeric regions in Triticeae species (Poaceae) and its evolution in wheat. Genome45: 946-955.
  • Kishii, M., Nagaki, K., Tsujimoto, H., Sasakuma, T. 1999. Exclusive localization of tandem repetitive sequences in subtelomeric heterochromatin regions of Leymus racemosus (Poaceae, Triticeae). Chromosome Res.7: 519-529.
  • Kishii, M., Nagaki, K., Tsujimoto, H. 2001. A tandem repetitive sequence located in the centromeric region of common wheat (Triticum aestivum) chromosomes. Chromosome Res.9: 417-428.
  • Kubis, S., Schmidt, T., Heslop-Harrison, J. S. 1998. Repetitive DNA elements as a major component of plant genomes. Ann. Bot.82A: 45-55.
  • Levy, A. V., Feldman, M. 2002. The impact of polyploidy on grass genome evolution. Plant Physiol.130: 1587-1593.
  • Louis, E. J., Vershinin, A. V. 2005. Chromosome ends: different sequences may provide conserved functions. Bioessays27: 685-697.
  • McIntyre, C. L., Pereira, S., Moran, L. B., Appels, R. 1990. New Secale cereale (rye) DNA derivatives for the detection of rye chromosome segments in wheat. Genome33: 317-323.
  • McNeil, D., Lagudah, E. S., Hohmann, U., Appels, R. 1995. Amplification of DNA sequences in wheat and its relatives: the Dgas44 and R350 families of repetitive sequences. Genome37: 320-327.
  • Mori, N., Lui, Y. G., Tsunewaki, K. 1995. Wheat phylogeny determined by RFLP analysis of nuclear DNA: II. Wild tetraploid wheats. Theor. Appl. Genet.90: 129-134.
  • Mukai, Y., Nakahara, Y., Yamamoto, M. 1993. Simultaneous discrimination of the three genomes in hexaploid wheat by multicolor fluorescence in situ hybridization using total genomic and highly repeated DNA probes. Genome36: 489-494.
  • Nagaki, K., Tsujimoto, H., Isono, K., Sasakuma, T. 1995. Molecular characterization of a tandem repeat, Afa family, and its distribution among Triticeae. Genome38: 479-486.
  • Nakajima, R., Noma, K., Ohtsubo, H., Ohtsubo, E. 1996. Identification and characterization of two tandem repeat sequences (TrsB and TrsC) and a retrotransposon (RIRE1) as genome-general sequences in rice. Genes Genet. Syst.71: 373-382.
  • Nasuda, S., Hudakova, S., Schubert, I., Houben, A., Endo, T. R. 2005. Stable barley chromosomes without centromeric repeats. Proc. Natl. Acad. Sci. USA102: 9842-9847.
  • Ohmido, N., Fukui, K. 1997. Visual verification of close disposition between a rice A genome-specific DNA sequence (TrsA) and the telomere sequence. Plant Mol. Biol.35: 963-968.
  • Okada, T., Gondo, Y., Goto, J., Kanazawa, I., Hadano, S., Ikeda, J. E. 2002. Unstable transmission of the RS447 human megasatellite tandem repetitive sequence that contains the USP17 deubiquitinating enzyme gene. Hum. Genet.110: 302-313.
  • Pestsova, E. G., Goncharov, N. P., Salina, E. A. 1998. Elimination of a tandem repeat of telomeric heterochromatin during evolution of wheat. Theor. Appl. Genet.97: 1380-1386.
  • Rayburn, A. L., Gill, B. S. 1986. Isolation of a D-genome specific repeated DNA sequence from Aegilops squarrosa. Plant. Mol. Biol. Rep.4: 102-109.
  • Salina, E. A., Pestsova, E. G., Adonina, I. G., Vershinin, A. V. 1998. Identification of a new family of tandem repeats in Triticeae genomes. Euphytica100: 231-237.
  • Salina, E., Adonina, I., Vatolina, T., Kurata, N. 2004a. A comparative analysis of the composition and organization of two subtelomeric repeat families in Aegilops speltoides Tausch. and related species. Genetica122: 227-237.
  • Tautz, D., Renz, M. 1984. Simple sequences are ubiquitious repetitive component of eukaryotic genomes. Nucl. Acid. Res.12: 4127-4137.
  • Tsujimoto, H., Mukai, Y., Akagawa, K., Nagaki, K., Fujigaki, J., Yamamoto, M., Sasakuma, T. 1997. Identification of individual barley chromosomes based on repetitive sequences: conservative distribution of Afa-family repetitive sequences on the chromosomes of barley and wheat. Genes Genet. Syst. 72: 303-309.
  • Tsunewaki, K. 1996. Plasmon analysis as the counterpart of genome analysis. In: Jauhar, P. P., ed. Methods of genome analysis in plants. CRC Press, New York, pp. 271-299.
  • Vershinin, A. V., Heslop-Harrison, J. S. 1998. Comparative analysis of the nucleosomal structure of rye, wheat and their relatives. Plant Mol. Biol.36: 149-161.
  • Vershinin, A. V., Salina, E. A., Solovyov, V. V., Timofeyeva, L. L. 1990. Genomic organization, evolution, and structural peculiarities of highly repetitive DNA of Hordeum vulgare. Genome33: 441-449.
  • Vershinin, A. V., Svitashev, S., Gummesson, P. O., Salomon, B., Bothmer, R., Bryngelsson, T. 1994. Characterization of a family of tandemly repeated DNA sequences in Triticeae. Theor. Appl. Genet.89: 217-225.
  • Vershinin, A. V., Alkhimova, E. G., Heslop-Harrison, J. S. 1996. Molecular diversification of tandemly organized DNA sequences and heterochromatic chromosome regions in some Triticeae species. Chromosome Res.4: 515-525.
  • Walsh, J. B. 1987. Persistence of tandem arrays: implications for satellite and simple sequence DNA's. Genetics115: 553-567.
  • Werner, J. E., Kota, R. S., Gill, B. S., Endo, T. R. 1992. Distribution of telomeric repeats and their role in healing of broken chromosome ends in wheat. Genetics35: 844-848.
  • Wu, K.-S., Tanksley, S. D. 1993. Genetic and physical mapping of telomeres and macrosatellites of rice. Plant Mol. Biol.22: 861-872.
  • Zhang, P., Friebe, B., Gill B. S. 2002. Variation in the distribution of a genome-specific DNA sequences on chromosomes reveals evolutionary relations in the Triticum and Aegilops complex. Plant Syst. Evol.235: 169-179.
  • Zhang, Y., Huang, Y., Zhang, L., Li, Y., Lu, T., Lu, Y., Feng, Q., Zhao, Q., Cheng, Z., Xue, Y., Wing, R. A., Han, B. 2004. Structural features of the rice chromosome 4 centromere. Nucl. Acids Res.32: 2023-2030.
  • Adonina, I. G., Salina, E. A. 2007. The mechanisms of variation of subtelomeric repeats Spelt1 in the progeny of Introgressive line Triticum aestivum L. x Aegilops speltoides Tausch. Russ. J. Genet.43: 458-460 (in English).
  • Adonina, I. G., Salina, E. A., Efremova, T. T., Pshenichnikova, T. A. 2004. The study of introgressive lines of Triticum aestivum x Aegilops speltoides by in situ and SSR analyses. Plant Breed.123: 220-224.
  • Alkhimova, O. G., Mazurok, N. A., Potapova, T. A., Zakian, S. M., Heslop-Harrison, J. S., Vershinin, A. V. 2004. Diverse patterns of the tandem repeats organization in rye chromosomes. Chromosoma113: 42-52.
  • Anamthawat-Jonsson, K., Heslop-Harrison, J. S. 1993. Isolation and characterization of genome-specific DNA sequences in Triticeae species. Mol. Gen. Genet.240: 151-158.
  • Appels, R., Moran, L. B., Gustafson, J. P. 1986. Rye heterochromatin. I. Studies on clusters of the major repeating sequence and the identification of a new dispersed repetitive sequence element. Can. J. Genet. Cytol.28: 645-657.
  • Badaeva, E. D. 2000. Chromosome analysis in investigation of the origin of the B- and G-genomes of polyploid wheats. Membrane Cell Biol.18: 216-229 (in Russian).
  • Badaeva, E. D., Friebe, B., Gill, B. S. 1996a. Genome differentiation in Aegilops. 1. Distribution of highly repetitive DNA sequences on chromosomes of diploid species. Genome39: 293-306.
  • Badaeva, E. D., Friebe, B., Gill B. S. 1996b. Genome differentiation in Aegilops. 1. Physical mapping of 5S and 18S-26S ribosomal RNA gene families in diploid species. Genome39: 1150-1158.
  • Barnes, S. R., James, A. M., Jamieson, G. 1985. The organization, nucleotide sequence and chromosomal distribution of a satellite DNA from Allium cepa.Chromosoma92: 185-192.
  • Bedbrook, R. J., Jones, J., O'Dell, M., Thompson, R. J., Flavell, R. B. 1980. A molecular description of telomeric heterochromatin in Secale species. Cell19: 545-560.
  • Belostotsky, D. A., Ananiev, E. V. 1990. Characterization of relic DNA from barley genome. Theor. Appl. Genet.80: 374-380.
  • Bennetzen, J. L., Ma, J., Devos, K. M. 2005. Mechanisms of recent genome size variation in flowering plants. Ann. Bot.95: 127-132.
  • Brutlag, D. L. 1980. Molecular arrangement and evolution of heterochromatic DNA. Annu. Rev. Genet.14: 121-144.
  • Charlesworth, B., Snegowski, P., Stephan, W. 1994. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature371: 215-220.
  • Cheng, Z. J., Murata, M. 2003. A centromeric tandem repeat family originating from a part of Ty3/gypsy-retroelement in wheat and its relatives. Genetics164: 665-672.
  • Contento, A., Heslop-Harrison, J. S., Schwarzacher, T. 2005. Diversity of a major repetitive DNA sequences in diploid and polyploid Triticeae. Cytogenet. Genome Res.109: 34-42.
  • Cuadrado, A., Ceoloni, C., Jouve, N. 1995. Variation in highly repetitive DNA composition of heterochromatin in rye studied by fluorescence in situ hybridization. Genome38: 1061-1069.
  • Dennis, E. S., Gerlach, W. L., Peacock, W. J. 1980. Identical polypyrimidine polypurine satellite DNA in wheat and barley. Heredity44: 345-366.
  • Dover, G., Brown, S., Coen, E., Dalais, J., Strachan, T., Trick, M. 1982. Dynamics of genome evolution and species differentiation. In: Dover, G. A., Flavell, R. B., eds. Genome evolution. Academic Press, London, pp. 329-356.
  • Dvorak, J., Mcguire, P. E., Cassidy, B. 1988. Apparent sources of the A genomes of wheats inferred from polymorphism in abundance and restriction fragment length of repeated nucleotide sequences. Genome30: 680-689.
  • Eig, A. 1929. Monographisch-kritische Ubersicht der Gattung Aegilops. Repertorium Specierum Novarum Regni Vegetabilis55: 1-228.
  • Feldman, M. The origin of cultivated wheat. 2001. In: Bonjean, A. P., Angus, W. J., eds. The world wheat book. Lavoisier Publishing, Paris, pp. 3-58.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.