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Original Articles

Physical mapping of the wheat genome: A coordinated effort to lay the foundation for genome sequencing and develop tools for breeders

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Pages 307-313 | Published online: 14 Mar 2013

References

  • Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigo, R., Gingeras, T. R. Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., et al. 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature447: 799-816.
  • Chalhoub, B., Belcram, H., Caboche, M. 2004. Efficient cloning of plant genomes into bacterial artificial chromosome (BAC) libraries with larger and more uniform insert size. Plant Biotechnol. J.2: 181-188.
  • Feldman, M. 2001. In: Bonjean, A. P., Angus, W. J., eds. The world wheat book: a history of wheat breeding. Lavoisier Publishing, Paris, pp. 3-56.
  • Flavell, A. J., Knox, M. R., Pearce, S. R., Ellis, T. H. 1998. Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis. Plant J.16: 643-650.
  • Gill, B. S., Appels, R., Botha-Oberholster, A.-M., Buell, C. R., Bennetzen, J. L., Chalhoub, B., Chumley, F., Dvorak, J., Iwanaga, M., et al. 2004. A workshop report on wheat genome sequencing: international genome research on wheat consortium. Genetics168: 1087-1096.
  • Jacobsen, E., Schouten, H. J. 2007. Cisgenesis strongly improves introgression breeding and induced translocation breeding of plants. Trends Biotechnol.25: 219-223.
  • Klein, P. E., Klein, R. R., Cartinhour, S. W., Ulanch, P. E., Dong, J., Obert, J. A., Morishige, D. T., Schlueter, S. D., Childs, K. L., et al. 2000. A high-throughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map. Genome Res.10: 789-807.
  • Kubalakova, M., Vrana, J., Cihalikova, J., Simkova, H. 2002. Flow karyotyping and chromosome sorting in bread wheat (Triticum aestivum L.). Theor. Appl. Genet.104: 1362-1372.
  • Luo, M. C., Thomas, C., You, F. M., Hsiao, J., Ouyang, S., Buell, C. R., Malandro, M., McGuire, P. E., Anderson, O. D., et al. 2003. High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis. Genomics82: 378-389.
  • Munkvold, J. D., Greene, R. A., Bermudez-Kandianis, C. E., La Rota, C. M., Edwards, H., Sorrells, S. F., Dake, T., Benscher, D., Kantety, R., et al. 2004. Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. Genetics168: 639-650.
  • Paux, E., Roger, D., Badaeva, E., Gay, G., Bernard, M., Sourdille, P., Feuillet, C. 2006. Characterizing the composition and evolution of homoeologous genomes in hexaploid wheat through BAC-end sequencing on chromosome 3B. Plant J.48: 463-474.
  • Paux, E., Legeai, F., Guilhot, N., Adam-Blondon, A. F., Alaux, M., Salse, J., Sourdille, P., Leroy, P., Feuillet, C. 2007. Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis. Funct. Integrative Genomics8: 29.
  • Safar, J., Bartos, J., Janda, J., Bellec, A., Kubalakova, M., Valarik, M., Pateyron, S., Weiserova, J., Tuskova, R., et al. 2004. Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat. Plant J.39: 960-968.
  • Soderlund, C., Humphray, S., Dunham, A., French, L. 2000. Contigs built with fingerprints, markers, and FPC V4.7. Genome Res.10: 1772-1787.
  • Sourdille, P., Singh, S., Cadalen, T., Brown-Guedira, G. L., Gay, G., Qi, L., Gill, B. S., Dufour, P., Murigneux, A., et al. 2004. Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.). Funct. Integrative Genomics4: 12-25.
  • Vrana, J., Kubalakova, M., Simkova, H., Cihalikova, J., A. Lysak, M., Dolezel, J. 2000. Flow sorting of mitotic chromosomes in common wheat (Triticum aestivum L.). Genetics156: 2033-2041.
  • Wicker, T., Schlagenhauf, E., Graner, A., Close, T. J., Keller, B., Stein, N. 2006. 454 sequencing put to the test using the complex genome of barley. BMC Genomics7: 275.
  • Yim, Y. S., Moak, P., Sanchez-Villeda, H., Musket, T. A., Close, P., Klein, P. E., Mullet, J. E., McMullen, M. D., Fang, Z., et al. 2007. A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps. BMC Genomics8: 47.

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