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Article

A Likelihood Framework for Joint Estimation of Salmon Abundance and Migratory Timing Using Telemetric Mark—Recapture

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Pages 1385-1394 | Received 01 Apr 2010, Accepted 20 Jul 2010, Published online: 15 Feb 2011

References

  • Arnason , A. N. and Schwarz , C. J. 1995 . POPAN-4: Enhancements to a system for the analysis of mark-recapture data from open populations . Journal of Applied Statistics , 22 : 785 – 800 .
  • Beacham , T. D. , Wetklo , M. , Wallace , C. , Olsen , J. B. , Flannery , B. G. , Wenburg , J. K. , Templin , W. D. , Antonovich , A. and Seeb , L. W. 2008 . The application of microsatellites for stock identification of Yukon River Chinook salmon . North American Journal of Fisheries Management , 28 : 283 – 295 .
  • Bromaghin , J. F. , Underwood , T. J. and Hander , R. F. 2007 . Residual effects from fish wheel capture and handling of Yukon River fall chum salmon . North American Journal of Fisheries Management , 27 : 860 – 872 .
  • Burnham , K. P. and Anderson , D. R. 2002 . Model selection and multimodel inference: A practical information-theoretic approach, , 2nd edition New York : Springer-Verlag .
  • Cadrin , S. X. and Pastoors , M. A. 2008 . Precautionary harvest policies and the uncertainty paradox . Fisheries Research , 94 : 367 – 372 .
  • Cappiello , T. A. and Bromaghin , J. F. 1997 . Mark-recapture abundance estimate of fall-run chum salmon in the upper Tanana River, Alaska, 1995 . Alaska Fishery Research Bulletin , 4 : 12 – 35 .
  • Chernick , M. R. 1999 . Bootstrap methods: A practitioner's guide New York : Wiley .
  • Clark , J. H. , McGregor , A. , Mecum , R. D. , Krasnowski , P. and Carroll , A. M. 2006 . The commercial salmon fishery in Alaska . Alaska Fishery Research Bulletin , 12 : 1 – 146 .
  • Cleary , P. M. and Hamazaki , T. 2007 . Fall chum salmon mark-recapture abundance estimation on the Tanana and Kantishna rivers, 2006 , Fishery Data Series Number 07-45 Anchorage : Alaska Department of Fish and Game .
  • Conitz , J. M. and Zhang , X. 2009 . Kutlaku Lake subsistence sockeye salmon project: 2006 annual and final report , Fishery Data Series Number 09-41 Anchorage : Alaska Department of Fish and Game .
  • Cowen , L. , Walsh , S. J. , Schwarz , C. J. , Cadigan , N. and Morgan , J. 2009 . Estimating exploitation rates of migrating yellowtail flounder (Limanda ferruginea) using multistate mark-recapture methods incorporating tag loss and variable reporting rates . Canadian Journal of Fisheries and Aquatic Sciences , 66 : 1245 – 1255 .
  • Darroch , J. N. 1961 . The two-sample capture-recapture census when tagging and sampling are stratified . Biometrika , 48 : 241 – 260 .
  • Doctor , K. K. , Hilborn , R. , Rowse , M. and Quinn , T. 2010 . Spatial and temporal patterns of upriver migration by sockeye salmon populations in the Wood River system, Bristol Bay, Alaska . Transactions of the American Fisheries Society , 139 : 80 – 91 .
  • Dorner , B. , Peterman , R. M. and Haeseker , S. L. 2008 . Historical trends in productivity of 120 Pacific pink, chum, and sockeye salmon stocks reconstructed by using a Kalman filter . Canadian Journal of Fisheries and Aquatic Sciences , 65 : 1842 – 1866 .
  • Efron , B. 1987 . Better bootstrap confidence intervals . Journal of the American Statistical Association , 82 : 171 – 185 .
  • Eggers , D. M. Robust harvest policies for Pacific salmon fisheries. Proceedings of the international symposium on management strategies for exploited fish populations . Edited by: Kruse , G. , Eggers , D. M. , Marasco , R. J. , Pautzke , C. and Quinn , T. J. II . pp. 85 – 106 . Fairbanks : University of Alaska . Alaska Sea Grant College Program, Report 93-02
  • Eggers , D. M. , Skvorc , P. A. II and Burwen , D. L. 1995 . Abundance estimates of Chinook salmon in the Kenai River using dual-beam sonar . Alaska Fishery Research Bulletin , 2 : 1 – 22 .
  • Gates , K. S. , Palmer , D. E. and Bromaghin , J. F. 2009 . Run timing, abundance, and distribution of adult coho salmon in the Kasilof River watershed, Alaska, 2008 , Alaska Fisheries Data Series Number 2009-14 Soldotna , Alaska : U.S. Fish and Wildlife Service .
  • Link , M. R. and Peterman , R. M. 1998 . Estimating the value of in-season estimates of abundance of sockeye salmon (Oncorhynchus nerka) . Canadian Journal of Fisheries and Aquatic Sciences , 55 : 1408 – 1418 .
  • Metcalf , M. , Reid , J. and Cohen , M. 2008 . Fortran 95/2003 explained New York : Oxford University Press .
  • Pahlke , K. A. and Bernard , D. R. 1996 . Abundance of the Chinook salmon escapement in the Taku River, 1989 to 1990 . Alaska Fishery Research Bulletin , 3 : 9 – 20 .
  • Palmer , D. E. , Gates , K. S. and Bromaghin , J. F. 2008 . Run timing, abundance, and distribution of adult coho salmon in the Kasilof River watershed, Alaska, 2007 , Alaska Fisheries Data Series Number 2008-19 Kenai , Alaska : U.S. Fish and Wildlife Service .
  • Plante , N. , Rivest , L. and Tremblay , G. 1998 . Stratified capture-recapture estimation of the size of a closed population . Biometrics , 55 : 47 – 60 .
  • Pollock , K. H. 1982 . A capture-recapture design robust to unequal probability of capture . Journal of Wildlife Management , 46 : 752 – 757 .
  • Price , M. H. H. , Darimont , C. T. , Temple , N. F. and MacDuffee , S. M. 2008 . Ghost runs: Management and status assessment of Pacific salmon (Oncorhynchus spp.) returning to British Columbia's central and north coasts . Canadian Journal of Fisheries and Aquatic Sciences , 65 : 2712 – 2718 .
  • Rao , C. R. 1973 . Linear statistical inference and its applications, , 2nd edition New York : Wiley .
  • RDCT (R Development Core Team). 2009. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. Available: R-project.org (http://R-project.org) . (April 2010).
  • Schnute , J. and Sibert , J. 1983 . The salmon terminal fishery: A practical, comprehensive timing model . Canadian Journal of Fisheries and Aquatic Sciences , 40 : 835 – 853 .
  • Schwarz , C. J. , Bailey , R. E. , Irvine , J. R. and Dalziel , F. C. 1993 . Estimating salmon spawning escapement using capture-recapture methods . Canadian Journal of Fisheries and Aquatic Sciences , 50 : 1181 – 1197 .
  • Seber , G. A. F. 1982 . The estimation of animal abundance and related parameters, , 2nd edition New York : Macmillan .
  • Shelton , P. A. and Sinclair , A. F. 2008 . It's time to sharpen our definition of sustainable fisheries management . Canadian Journal of Fisheries and Aquatic Sciences , 65 : 2305 – 2314 .
  • Spencer , T. R. , Hamazaki , T. and Eiler , J. H. 2007 . Mark-recapture abundance estimates for Yukon River Chinook salmon in 2004 , Fishery Data Series Number 07-30 Anchorage : Alaska Department of Fish and Game .
  • Stuby , L. 2007 . Inriver abundance of Chinook salmon in the Kuskokwim River, 2002––2006 , Fishery Data Series Number 07-93 Anchorage : Alaska Department of Fish and Game .
  • Underwood , T. J. , Gordon , J. A. , Millard , M. J. , Lubinski , B. R. and Klosiewski , S. P. 2007 . Appropriateness of the Darroch estimator for monitoring adult chum salmon on the middle Yukon River, Alaska . North American Journal of Fisheries Management , 27 : 303 – 314 .
  • White , G. C. and Burnham , K. P. 1999 . Program MARK: Survival estimation from populations of marked animals . Bird Study , 46 : 120 – 139 .

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