Classification Tree Models for Predicting Distributions of Michigan Stream Fish from Landscape Variables

References

• Allan , J. D. 2004 . Landscapes and riverscapes: The influence of land use on stream ecosystems . Annual Review of Ecology, Evolution, and Systematics , 35 : 257 – 284 .
   Web of Science ®Google Scholar
• Allouche , O. , Tsoar , A. and Kadmon , R. 2006 . Assessing the accuracy of species distribution models: Prevalence, kappa and the true skill statistic (TSS) . Journal of Applied Ecology , 43 : 1223 – 1232 .
   Web of Science ®Google Scholar
• Bailey , J. and Alanara , A. 2006 . Effect of feed portion size on growth of rainbow trout, Oncorhynchus mykiss (Walbaum), reared at different temperatures . Aquaculture , 253 : 728 – 730 .
   Web of Science ®Google Scholar
• Bailey , R. M. , Latta , W. C. , Simpson , R. A. and Smith , G. R. 2000 . Distribution maps of Michigan fishes Ann Arbor : University of Michigan, Museum of Zoology .
   Google Scholar
• Bailey , R. M. and Smith , G. R. 2002 . Names of Michigan fishes Ann Arbor : Michigan Department of Natural Resources, Fisheries Division .
   Google Scholar
• Baker , C. , Lawrence , R. , Montague , C. and Patten , D. 2006 . Mapping wetlands and riparian areas using Landsat ETM + imagery and decision tree-based models . Wetlands , 26 : 465 – 474 .
   Web of Science ®Google Scholar
• Bell , J. F. 1999 . “ Tree-based methods ” . In Machine learning methods for ecological applications Edited by: Fielding , A. H. 89 – 105 . Boston : Kluwer .
   Google Scholar
• Bent , P. C. 1971 . Influence of surface glacial deposits on streamflow characteristics Lansing, Michigan : U.S. Ecological Survey, Water Resources Division . Open-file Report
   Google Scholar
• Breiman , L. F. J. , Olshen , R. and Stone , C. 1984 . Classification and regression trees New York : Chapman and Hall .
   Google Scholar
• Brenden , T. O. , Clark , R. D. , Cooper , A. R. , Seelbach , P. W. , Wang , L. , Aichele , S. , Bissell , E. G. and Stewart , J. S. 2006 . “ A GIS framework for collecting, managing, and analyzing multiscale landscape variables across large regions for river conservation and management ” . In Landscape influences on stream habitat and biological assemblages Edited by: Hughes , R. M. , Wang , L. and Seelbach , P. W. 49 – 74 . Bethesda, Maryland : American Fisheries Society . Symposium 48
   Google Scholar
• De'ath , G. 2002 . Multivariate regression trees: A new technique for modeling species-environment relationships . Ecology , 83 : 1105 – 1117 .
   Web of Science ®Google Scholar
• De'ath , G. and Fabricius , K. E. 2000 . Classification and regression trees: A powerful yet simple technique for ecological data analysis . Ecology , 81 : 3178 – 3192 .
   Web of Science ®Google Scholar
• Fausch , K. D. , Hawkes , C. L. and Parsons , M. G. 1988 . “ Models that predict standing crop of stream fish from habitat variables: 1950-1985 ” . In U.S. Forest Service General Technical Report PNW-GTR-213
   Google Scholar
• Fausch , K. D. , Torgersen , C. E. , Baxter , C. V. and Li , H. W. 2002 . Landscapes to riverscapes: Bridging the gap between research and conservation of stream fish . BioScience , 52 : 483 – 498 .
   Web of Science ®Google Scholar
• Fielding , A. H. and Bell , J. F. 1997 . A review of methods for the assessment of prediction errors in conservation presence/absence models . Environmental Conservation , 24 : 38 – 49 .
   Web of Science ®Google Scholar
• Flecker , A. S. and Townsend , C. R. 1994 . Community-wide consequences of trout introduction in New Zealand streams . Ecological Applications , 4 : 798 – 807 .
   Web of Science ®Google Scholar
• GLSC (Great Lakes Science Center) . 2006 . The Great Lakes Aquatic GAP Project Available: www.glsc.usgs.gov. (September 2007)
   Google Scholar
• Hawkes , H. A. 1975 . “ River zonation and classification ” . In River ecology Edited by: Whitton , B. A. 312 – 374 . Berkeley : University of California Press .
   Google Scholar
• Hinz , L. C. and Wiley , M. J. 1997 . Growth and production of juvenile trout in Michigan streams: Influence of temperature Ann Arbor : Michigan Department of Natural Resources . Fisheries Research Report 2041
   Google Scholar
• Holland , G. J. , Greenstreet , S. P. R. , Fraser , H. M. and Robertson , M. R. 2005 . Identifying sandeel Ammodytes marinus sediment habitat preferences in the marine environment . Marine Ecology Progress Series , 303 : 269 – 282 .
   Web of Science ®Google Scholar
• Larson , G. L. and Moore , S. E. 1985 . Encroachment of exotic rainbow trout into stream populations of native brook trout in the southern Appalachian Mountains . Transactions of the American Fisheries Society , 114 : 195 – 203 .
   Web of Science ®Google Scholar
• Leftwich , K. N. , Angermeier , P. L. and Dolloff , C. A. 1997 . Factors influencing behavior and transferability of habitat models for a benthic stream fish . Transactions of the American Fisheries Society , 126 : 725 – 734 .
   Web of Science ®Google Scholar
• Levin , S. A. 1992 . The problem of pattern and scale in ecology . Ecology , 73 : 1943 – 1967 .
   Web of Science ®Google Scholar
• Lyons , J. 1992 . “ Using the index of biotic integrity (IBI) to measure environmental quality in warmwater streams of Wisconsin ” . In U.S. Forest Service General Technical Report NC-149
   Google Scholar
• Lyons , J. 1996 . Patterns in the species composition of fish assemblages among Wisconsin streams . Environmental Biology of Fishes , 45 : 329 – 341 .
   Web of Science ®Google Scholar
• Maret , T. R. , Robinson , C. T. and Minshall , G. W. 1997 . Fish assemblages and environmental correlates in least-disturbed streams of the upper Snake River basin . Transactions of the American Fisheries Society , 126 : 200 – 216 .
   Web of Science ®Google Scholar
• Matthews , W. J. and Robison , H. R. 1988 . The distribution of the fishes of Arkansas: A multivariate analysis . Copeia , 1988 : 358 – 374 .
   Google Scholar
• McKenna , J. E. , McDonald , R. P. , Castiglione , C. , Morrison , S. S. , Kowalski , K. P. and Passino-Reader , D. 2006 . “ A broadscale fish-habitat model development process: Genesee basin, New York ” . In Influence of landscapes on stream habitats and biological assemblages Edited by: Hughes , R. M. , Wang , L. and Seelbach , P. W. 533 – 554 . Bethesda, Maryland : American Fisheries Society . Symposium 48
   Google Scholar
• Olden , J. D. 2001 . A species-specific approach to modeling biological communities and its potential for conservation . Conservation Biology , 17 : 854 – 863 .
   Web of Science ®Google Scholar
• Olden , J. D. and Jackson , D. A. 2002 . A comparison of statistical approaches for modelling fish species distributions . Freshwater Biology , 47 : 1976 – 1995 .
   Web of Science ®Google Scholar
• Poff , N. L. and Allan , J. D. 1995 . Functional organization of stream fish assemblages in relation to hydrological variability . Ecology , 76 : 606 – 627 .
   Web of Science ®Google Scholar
• Poff , N. L. , Allan , J. D. , Bain , M. B. , Karr , J. R. , Prestegaard , K. L. , Richter , B. D. , Sparks , R. E. and Stromberg , J. C. 1997 . The natural flow regime . BioScience , 47 : 769 – 784 .
   Web of Science ®Google Scholar
• Rahel , F. J. and Hubert , W. A. 1991 . Fish assemblages and habitat gradients in a Rocky Mountain-Great Plains stream: Biotic zonation and additive patterns of community change . Transactions of the American Fisheries Society , 120 : 319 – 332 .
   Web of Science ®Google Scholar
• Rand , P. S. , Hinch , S. G. , Morrison , J. , Foreman , M. G. G. , MacNutt , M. J. , MacDonald , J. S. , Healey , M. C. , Farrell , A. P. and Higgs , D. A. 2006 . Effects of river discharge, temperature, and future climates on energetics and mortality of adult migrating Fraser River sockeye salmon . Transactions of the American Fisheries Society , 135 : 655 – 667 .
   Web of Science ®Google Scholar
• Rathert , D. , White , D. , Sifneos , J. C. and Hughes , R. M. 1999 . Environmental correlates of species richness for native freshwater fish in Oregon . Journal of Biogeography , 26 : 257 – 273 .
   Web of Science ®Google Scholar
• Richards , C. L. , Johnson , L. B. and Host , G. E. 1996 . Landscape-scale influences on stream habitats and biota . Canadian Journal of Fisheries and Aquatic Sciences , 53 ( Supplement 1 ) : 295 – 311 .
   Google Scholar
• Roberts , M. E. , Burr , B. M. , Whiles , M. R. and Santucci , V. J. 2005 . Reproductive ecology and food habits of the blacknose shiner, Notropis heterolepis, in northern Illinois . American Midland Naturalist , 155 : 70 – 83 .
   Web of Science ®Google Scholar
• Schlosser , I. J. 1991 . Stream fish ecology: A landscape perspective . BioScience , 41 : 704 – 712 .
   Web of Science ®Google Scholar
• Seelbach , P. W. and Wiley , M. J. 1997 . Overview of the Michigan Rivers Inventory (MRI) project Ann Arbor : Michigan Department of Natural Resources . Fisheries Technical Report 97-3
   Google Scholar
• Seelbach , P. W. , Wiley , M. J. , Sorranno , P. and Bremigan , M. 2002 . “ Aquatic conservation planning: Using landscape maps to predict ecological reference conditions for specific water ” . In Applying landscape ecology in biological conservation Edited by: Gutzwiller , K. J. 454 – 477 . New York : Springer .
   Google Scholar
• Smale , M. A. and Rabeni , C. F. 1995 . Hypoxia and hyperthermia tolerances of headwater stream fishes . Transactions of the American Fisheries Society , 124 : 698 – 710 .
   Web of Science ®Google Scholar
• Smith , T. A. and Kraft , C. E. 2005 . Stream fish assemblages in relation to landscape position and local habitat variables . Transactions of the American Fisheries Society , 134 : 430 – 440 .
   Web of Science ®Google Scholar
• Snyder , C. D. , Young , J. A. , Villella , R. and Lemarie , D. P. 2003 . Influences of upland and riparian land use patterns on stream biotic integrity . Landscape Ecology , 18 : 647 – 664 .
   Web of Science ®Google Scholar
• Steen , P. J. , Passino-Reader , D. and Wiley , M. J. 2006 . “ Modeling brook trout presence and absence from landscape variables using four different analytical methods ” . In Influence of landscapes on stream habitats and biological assemblages Edited by: Hughes , R. M. , Wang , L. and Seelbach , P. W. 513 – 531 . Bethesda, Maryland : American Fisheries Society . Symposium 48
   Google Scholar
• Steinberg , D. and Colla , P. 1997 . CART—Classification and regression trees San Diego, California : Salford Systems .
   Google Scholar
• Stoks , R. and McPeek , M. A. 2003 . Predators and life histories shape Lestes damselfly assemblages along a freshwater habitat gradient . Ecology , 84 : 1576 – 1587 .
   Web of Science ®Google Scholar
• Taverna , K. , Urban , D. L. and McDonald , R. I. 2005 . Modeling landscape vegetation pattern in response to historic land-use: A hypothesis-driven approach for the North Carolina Piedmont, USA . Landscape Ecology , 20 : 689 – 702 .
   Web of Science ®Google Scholar
• Trautman , M. B. 1981 . The fishes of Ohio Columbus : Ohio State University Press .
   Google Scholar
• UM (University of Michigan) . 2006 . Ecological classification of rivers for environmental assessment Available: sitemaker.umich.edu/riverclassproject. (September 2007)
   Google Scholar
• USGS (U.S. Geological Survey) . 2006 . National hydrography dataset Available: nhd.usgs.gov. (September 2007)
   Google Scholar
• Usio , N. , Nakajima , H. , Kamiyama , R. , Wakana , I. , Hiruta , S. and Takamura , N. 2006 . Predicting the distribution of invasive crayfish (Pacifastacus leniusculus) in a Kusiro Moor marsh (Japan) using classification and regression trees . Ecological Research , 21 : 271 – 277 .
   Web of Science ®Google Scholar
• Vanni , M. J. 1987 . Effects of nutrients and zooplankton size on the structure of a phytoplankton community . Ecology , 68 : 624 – 635 .
   Web of Science ®Google Scholar
• Vanni , M. J. , Layne , C. D. and Arnott , S. E. 1997 . ‘Top-down' trophic interactions in lakes: Effects of fish on nutrient dynamics . Ecology , 78 : 1 – 20 .
   Google Scholar
• Vannote , R. L. , Minshall , G. W. , Cummins , K. W. , Sedell , J. R. and Cushing , C. E. 1980 . The river continuum concept . Canadian Journal of Fisheries and Aquatic Sciences , 37 : 131 – 137 .
   Google Scholar
• Vaughan , I. P. and Ormerod , S. J. 2003 . Improving the quality of distribution models for conservation by addressing shortcomings in the field collection of training data . Conservation Biology , 17 : 1601 – 1611 .
   Web of Science ®Google Scholar
• Vayssieres , M. , Plant , R. E. and Allen-Diaz , B. H. 2000 . Classification trees: An alternative non-parametric approach for predicting species distributions . Journal of Vegetation Science , 11 : 679 – 694 .
   Web of Science ®Google Scholar
• Wang , L. , Lyons , J. , Kanehl , P. and Gatti , R. 1997 . Influences of watershed land use on habitat quality and biotic integrity in Wisconsin streams . Fisheries , 22 (6) : 6 – 12 .
   Web of Science ®Google Scholar
• Wang , L. , Lyons , J. , Rasmussen , P. W. and Seelbach , P. W. 2003 . Watershed, reach, and riparian influences on stream fish assemblages in the Northern Lakes and Forest Ecoregion, U.S.A . Canadian Journal of Fisheries and Aquatic Sciences , 60 : 491 – 505 .
   Web of Science ®Google Scholar
• Wehrly , K. E. , Wiley , M. J. and Seelbach , P. W. 2003 . Classifying regional variation in thermal regime based on stream fish community patterns . Transactions of the American Fisheries Society , 132 : 18 – 37 .
   Web of Science ®Google Scholar
• Wehrly , K. E. , Wiley , M. J. and Seelbach , P. W. 2006 . “ Influence of landscape features on summer water temperatures in lower Michigan streams ” . In Influence of landscapes on stream habitats and biological assemblages Edited by: Hughes , R. M. , Wang , L. and Seelbach , P. W. 113 – 127 . Bethesda, Maryland : American Fisheries Society . Symposium 48
   Google Scholar
• Wiley , M. J. , Kohler , S. L. and Seelbach , P. W. 1997 . Reconciling landscape and local views of aquatic communities: Lessons from Michigan trout streams . Freshwater Biology , 37 : 133 – 148 .
   Web of Science ®Google Scholar
• Wiley , M. J. , Osborne , L. L. and Larimore , R. W. 1990 . Longitudinal structure of an agricultural prairie river system and its relationship to current stream ecosystem theory . Canadian Journal of Fisheries and Aquatic Sciences , 47 : 373 – 384 .
   Web of Science ®Google Scholar
• Zorn , T. G. , Seelbach , P. W. and Wiley , M. J. 1998 . Patterns in the distributions of stream fishes in Michigan's Lower Peninsula Ann Arbor : Michigan Department of Natural Resources . Fisheries Research Report 2035
   Google Scholar
• Zorn , T. G. , Seelbach , P. W. and Wiley , M. J. 2002 . Distributions of stream fishes and their relationship to stream size and hydrology in Michigan's lower peninsula . Transactions of the American Fisheries Society , 131 : 70 – 85 .
   Web of Science ®Google Scholar
• Zorn , T. G. , Seelbach , P. W. and Wiley , M. J. 2004 . Utility of species-specific, multiple linear regression models for predictions of fish assemblages in rivers of Michigan's Lower Peninsula Ann Arbor : Michigan Department of Natural Resources . Fisheries Research Report 2072
   Google Scholar