Evaluating the Status and Trends of Physical Stream Habitat in Headwater Streams within the Interior Columbia River and Upper Missouri River Basins Using an Index Approach

References

• Al-Chokhachy , R. and Budy , P. 2007 . Summer microhabitat use of fluvial bull trout in eastern Oregon streams . North American Journal of Fisheries Management , 27 : 1068 – 1081 .
   Web of Science ®Google Scholar
• Angermeier , P. L. and Schlosser , I. J. 1987 . Assessing biotic integrity of the fish community in a small Illinois stream . North American Journal of Fisheries Management , 7 : 331 – 338 .
   Google Scholar
• Bauer , S. B. and Ralph , S. C. 2001 . Strengthening the use of aquatic habitat indicators in Clean Water Act programs . Fisheries , 26 (6) : 14 – 25 .
   Web of Science ®Google Scholar
• Baxter , C. V. , Frissell , C. A. and Hauer , F. R. 1999 . Geomorphology, logging roads, and the distribution of bull trout spawning in a forested river basin: Implications for management and conservation . Transactions of the American Fisheries Society , 128 : 854 – 867 .
   Web of Science ®Google Scholar
• Belsky , A. J. , Matzke , A. and Uselman , S. 1999 . Survey of livestock influences on stream and riparian ecosystems in the western United States . Journal of Soil and Water Conservation , 54 : 419 – 431 .
   Web of Science ®Google Scholar
• Benjamin , J. R. , Dunham , J. B. and Dare , M. R. 2007 . Invasion by nonnative brook trout in Panther Creek, Idaho: Roles of local habitat quality, biotic resistance, and connectivity to source habitats . Transactions of the American Fisheries Society , 136 : 875 – 888 .
   Web of Science ®Google Scholar
• Bernhardt , E. S. , Sudduth , E. B. , Palmer , M. A. , Allan , J. D. , Meyer , J. L. , Alexander , G. , Follastad-Shah , J. , Hassett , B. , Jenkinson , R. , Lave , R. , Rumps , J. and Pagano , L. 2005 . Restoring rivers one reach at a time: Results from a survey of U.S. river restoration practitioners . Restoration Ecology , 15 : 482 – 493 .
   Web of Science ®Google Scholar
• Bilby , R. E. 1981 . Role of organic debris dams in regulating the export of dissolved and particulate matter from a forested watershed . Ecology , 62 : 1234 – 1233 .
   Web of Science ®Google Scholar
• Binns , N. A. and Eiserman , F. M. 1979 . Quantification of fluvial trout habitat in Wyoming . Transactions of the American Fisheries Society , 108 : 215 – 228 .
   Web of Science ®Google Scholar
• Bisson , P. A. , Reeves , G. H. , Bilby , R. E. and Naiman , R. J. 1997 . “ Watershed management and salmon dynamics: Desired future conditions. ” . In Pacific Salmon and their ecosystems Edited by: Stouder , D. A. , Bisson , P. A. and Naiman , R. J. 447 – 474 . New York : Chapman and Hall .
   Google Scholar
• Bryant , M. D. , Caouette , J. P. and Wright , B. E. 2004 . Evaluating stream habitat survey data and statistical power using an example from Southeast Alaska . North American Journal of Fisheries Management , 24 : 1353 – 1362 .
   Web of Science ®Google Scholar
• Budy , P. , Thiede , G. P. , Bouwes , N. , Petrosky , C. and Schaller , H. 2002 . Evidence linking delayed mortality of Snake River salmon to their earlier hydrosystem experience . North American Journal of Fisheries Management , 22 : 35 – 51 .
   Web of Science ®Google Scholar
• Buffington , J. M. and Montgomery , D. R. 1999 . Effects of hydraulic roughness on surface textures of gravel-bed rivers . Water Resources Research , 35 : 3507 – 3521 .
   Web of Science ®Google Scholar
• Burnett , K. M. , Reeves , G. H. , Clarke , S. E. and Christiansen , K. R. 2006 . “ Comparing riparian and catchment influences on stream habitat in a forested, montane, landscape. ” . In Landscape influences on stream habitats and biological assemblages , Symposium 48 Edited by: Hughes , R. M. , Wang , L. and Seelbach , P. W. 175 – 197 . Bethesda, Maryland : American Fisheries Society .
   Google Scholar
• Chamberlin , T. W. , Harr , R. D. and Everest , F. H. 1991 . “ Timber harvesting, silviculture, and watershed processes: Landscape- and reach-scale predictors of large wood abundance in low-gradient streams. ” . In Landscape influences on stream habitats and biological assemblages , Symposium 48 Edited by: Hughes , R. M. , Wang , L. and Seelbach , P. W. 151 – 173 . Bethesda, Maryland : American Fisheries Society .
   Google Scholar
• Davies , N. M. , Norris , R. H. and Thoms , M. C. 2000 . Prediction and assessment of local stream habitat features using large-scale catchment characteristics . Freshwater Biology , 45 : 343 – 369 .
   Web of Science ®Google Scholar
• Dose , J. J. and Roper , B. B. 1994 . Long-term changes in low-flow channel widths within the three South Umpqua Watershed, Oregon . Water Resources Bulletin , 30 : 993 – 1000 .
   Google Scholar
• Dunham , J. B. , Rieman , B. E. and Chandler , G. 2003 . Influences of temperature and environmental variable on the distribution of bull trout within streams at the southern margin of its range . North American Journal of Fisheries Management , 23 : 894 – 904 .
   Web of Science ®Google Scholar
• Eaglin , G. S. and Hubert , W. A. 1993 . Effects of logging and roads on substrate and trout in streams of the Medicine Bow National Forest, Wyoming . North American Journal of Fisheries Management , 13 : 844 – 846 .
   Google Scholar
• ESRI (Environmental Systems Research Institute). 2008 . Getting to know ArcView GIS, 3rd edition Redlands, California : ESRI .
   Google Scholar
• FEMAT (Forest Ecosystem Management Assessment Team). 1993 . Forest ecosystem management: An ecological, economic, and social assessment Portland, Oregon : U.S. Forest Service, Bureau of Land Management, U.S. National Marine Fisheries Service, U.S. Fish and Wildlife Service, U.S. Park Service, and U.S. Environmental Protection Agency .
   Google Scholar
• Frissell , C. A. , Liss , W. J. , Warren , C. E. and Hurley , M. D. 1986 . A hierarchical framework for stream habitat classification: Viewing streams in a watershed context . Environmental Management , 10 : 199 – 214 .
   Web of Science ®Google Scholar
• Furniss , M. J. , Roelofs , T. D. and Yee , C. S. 1991 . “ Road construction and maintenance. ” . In Influences of forest and rangeland management on salmonid fishes and their habitats Edited by: Meehan , W. R. 389 – 424 . Bethesda, Maryland : American Fisheries Society . Special Publication 19
   Google Scholar
• Harding , J. S. , Benfield , E. F. , Bolstad , P. V. , Helfman , G. S. and D Jones , E. B. III . Stream biodiversity: The ghost of land use past. Proceedings of the National Academy of Sciences . Vol. 95 , pp. 1483 – 1487 .
   Google Scholar
• Hawkins , C. P. , Norris , R. H. , Hogue , J. N. and Feminella , J. W. 2000 . Development and evaluation of predictive models for measuring the biological integrity of streams . Ecological Applications , 10 : 1456 – 1477 .
   Web of Science ®Google Scholar
• Heitke , J. D. , Archer , E. J. , Dugaw , D. D. , Bouwes , B. A. , Archer , E. A. , Henderson , R. C. and Kershner , J. L. 2007 . Effectiveness monitoring for streams and riparian areas: Sampling protocol for stream channel attributes Available: http://www.fs.fed.us/biology/fishecology/emp. (November 2008).
   Google Scholar
• Herlihy , A. T. , Gerth , W. J. , Li , J. and Banks , J. L. 2005 . Macroinvertebrate community response to natural and forest harvest gradients in western Oregon headwater streams . Freshwater Biology , 50 : 905 – 919 .
   Web of Science ®Google Scholar
• Honea , J. M. , Jorgensen , J. C. , McClure , M. M. , Cooney , T. D. , Engie , K. , Holzer , D. M. and Hilborn , R. 2009 . Evaluating habitat effects on population status: Influence of habitat restoration on spring-run Chinook salmon . Freshwater Ecology , 54 : 1576 – 1592 .
   Google Scholar
• Hughes , R. M. , Howlin , S. and Kaufmann , P. R. 2004 . A biointegrity index (IBI) for coldwater streams of western Oregon and Washington . Transactions of the American Fisheries Society , 133 : 1497 – 1515 .
   Web of Science ®Google Scholar
• Hughes , R. M. , Kaufmann , P. R. , Herlihy , A. T. , Kincaid , T. M. , Reynolds , L. and Larsen , D. P. 1998 . A process for developing and evaluating indices of fish assemblage integrity . Canadian Journal of Fisheries and Aquatic Sciences , 55 : 1618 – 1631 .
   Web of Science ®Google Scholar
• Hughes , R. M. , Larsen , D. P. and Omernik , J. M. 1986 . Regional reference sites: A method for assessing stream potentials . Environmental Management , 10 : 629 – 635 .
   Web of Science ®Google Scholar
• Jeffers , J. N. R. 1998 . Characterization of river habitats and prediction of habitat features using ordination techniques . Aquatic Conservation Marine and Freshwater Ecosystems , 8 : 529 – 540 .
   Web of Science ®Google Scholar
• Jones , J. A. , Swanson , E. J. , Wemple , B. C. and Snyder , K. U. 2000 . Effects of roads on hydrology, geomorphology, and disturbance patches in stream networks . Conservation Biology , 14 : 76 – 85 .
   Web of Science ®Google Scholar
• Karr , J. R. and Chu , E. W. 1999 . Restoring life in running waters: Better biological monitoring Washington, D.C. : Island Press .
   Google Scholar
• Katz , S. L. , Barnas , K. , Hicks , R. , Cowen , J. and Jenkinson , R. 2007 . Freshwater habitat restoration actions in the Pacifica Northwest: A decade's investment in habitat improvement . Restoration Ecology , 3 : 494 – 505 .
   Google Scholar
• Kauffman , J. B. , Beschta , R. L. , Otting , N. and Lytjen , D. 1997 . An ecological perspective of riparian and stream restoration in the western United States . Fisheries , 22 (5) : 12 – 24 .
   Web of Science ®Google Scholar
• Kauffman , J. B. and Krueger , W. C. 1984 . Livestock impacts on riparian ecosystems and streamside management implications: A review . Journal of Range Management , 37 : 430 – 438 .
   Google Scholar
• Kaufmann , P. R. , Faustini , J. M. , Larsen , D. P. and Shirazi , M. A. 2008 . A roughness-corrected index of relative bed stability for regional stream surveys . Geomorphology , 99 : 150 – 170 .
   Web of Science ®Google Scholar
• Kaufmann , P. R. , Levine , P. , Robison , E. G. , Seeliger , C. and Peck , D. V. 1999 . Quantifying physical habitat in wadeable streams Washington, D.C. : United States Environmental Protection Agency . EPA/620/R-99/03
   Google Scholar
• Kershner , J. L. , Archer , E. K. , Coles-Ritchie , M. , Cowley , E. R. , Henderson , R. C. , Kratz , K. , Quimby , C. M. , Turner , D. L. , Ulmer , L. C. and Vinson , M. R. 2004a . Guide to effective monitoring of aquatic and riparian resources Fort Collins, Colorado : Rocky Mountain Research Station . General Technical Report RMRS-GTR-121
   Google Scholar
• Kershner , J. L. , Roper , B. B. , Bouwes , N. , Henderson , R. and Archer , E. 2004b . An analysis of stream habitat conditions in reference and managed watersheds on some federal lands within the Columbia River basin . North American Journal of Fisheries Management , 24 : 1363 – 1375 .
   Web of Science ®Google Scholar
• Knighton , D. 1998 . Fluvial forms and processes New York : Oxford University Press .
   Google Scholar
• Littell , R. C. , Milliken , G. A. , Stroup , W. W. , Wolfinger , R. D. and Schabenberger , O. 2006 . SAS for mixed models, 2nd edition Cary, North Carolina : SAS Institute .
   Google Scholar
• Lyons , J. , Wang , L. and Simonson , T. D. 1996 . Development and validation of an index of biotic integrity for coldwater streams in Wisconsin . North American Journal of Fisheries Management , 16 : 241 – 256 .
   Google Scholar
• McIntosh , B. A. , Sedell , J. R. , Thurow , R. F. , Clarke , S. E. and Chandler , G. L. 2000 . Historical changes in pool habitat in the Columbia River basin . Ecological Applications , 10 : 1478 – 1496 .
   Web of Science ®Google Scholar
• Mebane , C. A. , Maret , T. R. and Hughes , R. M. 2003 . An index of biological integrity (IBI) for Pacific Northwest rivers . Transactions of the American Fisheries Society , 132 : 239 – 261 .
   Web of Science ®Google Scholar
• Meehan , W. R. 1991 . Influences of forest and rangeland management on salmonid fishes and their habitats Bethesda, Maryland : American Fisheries Society . Special Publication 19
   Google Scholar
• Milner , N. J. , Wyatt , R. J. and Broad , K. 1998 . HABSCORE – application and future developments of related habitat models . Aquatic Conservation Marine and Freshwater Ecosystems , 8 : 633 – 644 .
   Web of Science ®Google Scholar
• Minshall , G. W. , Petersen , R. C. , Cummins , K. W. , Bott , T. L. , Sedell , J. R. , Cushing , C. E. and Vannote , R. L. 1983 . Interbiome comparison of stream ecosystem dynamics . Ecological Monographs , 53 : 1 – 25 .
   Web of Science ®Google Scholar
• Montgomery , D. R. , Buffington , J. M. , Smith , R. D. , Schmidt , K. M. and Pess , G. 1995 . Pool spacing in forest channels . Water Resources Research , 31 : 1097 – 1105 .
   Web of Science ®Google Scholar
• Montgomery , D. R. and MacDonald , L. H. 2002 . Diagnostic approach to stream channel assessment and monitoring . Journal of the American Water Resources Association , 38 : 1 – 16 .
   Web of Science ®Google Scholar
• Moore , R. D. and Wondzell , S. M. 2005 . Physical hydrology and the effects of forest harvesting in the Pacific Northwest: A review . Journal of the American Water Resources Association , 41 : 763 – 784 .
   Web of Science ®Google Scholar
• Myers , J. J. and Swanson , S. 1995 . Impact of deferred rotation grazing on stream characteristics in central Nevada: A case study . North American Journal of Fisheries Management , 15 : 428 – 439 .
   Google Scholar
• Nehring , R. B. and Walker , P. G. 1996 . Whirling disease in the wild: The new reality in the intermountain west . Fisheries , 21 (5) : 28 – 30 .
   Google Scholar
• Northcote , T. G. and Ennis , G. L. 1994 . Mountain whitefish biology and habitat use in relation to compensation and improvement possibilities . Reviews in Fisheries Science , 2 : 347 – 371 .
   Google Scholar
• Oberdorff , T. , Pont , D. , Hugueny , B. and Porcher , J-P. 2002 . Development and validation of a fish-based index for the assessment of ‘river health' in France . Freshwater Biology , 47 : 1720 – 1734 .
   Web of Science ®Google Scholar
• Parsons , M. , Thoms , M. C. and Norris , R. H. 2004 . Development of a standardized approach to river habitat assessments in Australia . Environmental Monitoring and Assessment , 98 : 109 – 130 .
   PubMed Web of Science ®Google Scholar
• Plafkin , J. L. , Barbour , M. T. , Porter , K. D. , Gross , S. K. and Hughes , R. M. 1989 . Rapid bioassessment protocols for use in streams and rivers; benthic macroinvertebrates and fish Cincinnati, Ohio : U.S. Environmental Protection Agency . EPA/440/4–89/001
   Google Scholar
• Platts , W. S. 1991 . “ Livestock grazing. ” . In Influences of forest and rangeland management on salmonid fishes and their habitats Edited by: Meehan , W. R. 389 – 424 . Bethesda, Maryland : American Fisheries Society . Special Publication 19
   Google Scholar
• Pont , D. , Hugueny , B. , Beier , U. , Goffaux , D. , Melcher , A. , Noble , R. , Rogers , C. , Roset , N. and Schmutz , S. 2006 . Assessing river biotic condition at a continental scale: A European approach using functional metrics and fish assemblages . Journal of Applied Ecology , 43 : 70 – 80 .
   Web of Science ®Google Scholar
• Pulliam , H. R. 1988 . Sources, sinks, and population regulation . American Naturalist , 132 : 652 – 661 .
   Web of Science ®Google Scholar
• Rankin , E. T. 1989 . The qualitative habitat evaluation index (QHEI): Rationale, methods, and application Columbus, Ohio : Division of Water Quality Planning and Assessment .
   Google Scholar
• Raven , P. J. , Holmes , N. T. H. , Charrier , P. , Dawson , F. H. , Naura , M. and Boon , P. J. 2002 . Towards a harmonized approach for hydromorphological assessment of rivers in Europe: A qualitative comparison of three survey methods . Aquatic Conservation Marine and Freshwater Ecosystems , 12 : 405 – 424 .
   Web of Science ®Google Scholar
• Raven , P. J. , Holmes , N. T. H. , Dawson , F. H. and Everard , M. 1998 . Quality assessment using river habitat survey data . Aquatic Conservation Marine and Freshwater Ecosystems , 8 : 477 – 499 .
   Web of Science ®Google Scholar
• Reed , J. M. and Blaustein , A. R. 1997 . Biologically significant population declines and statistical power . Conservation Biology , 11 : 281 – 282 .
   Web of Science ®Google Scholar
• Reeves , G. H. , Everest , F. H. and Nickelson , T. E. 1989 . “ Identification of physical habitats limiting the production of coho salmon in western Oregon and Washington. ” . In U.S. Forest Service General Technical Report PNW-GTR-245
   Google Scholar
• Reynoldson , T. B. , Norris , R. H. , Resh , V. H. , Day , K. E. and Rosenberg , D. M. 1997 . The reference condition: A comparison of multimetric and multivariate approaches to assess water-quality impairment using benthic macroinvertebrates . Journal of the North American Benthological Society , 16 : 833 – 852 .
   Web of Science ®Google Scholar
• Rheinhardt , R. D. , Brinson , M. M. , Christian , R. R. , Miller , K. H. and Meyer , G. F. 2007 . A reference-based framework for evaluating the ecological condition of stream networks in small watersheds . Wetlands , 27 : 524 – 542 .
   Web of Science ®Google Scholar
• Rieman , B. E. , Peterson , J. T. and Myers , D. L. 2006 . Have brook trout (Salvelinus fontinalis) displaced bull trout (Salvelinus confluentus) along longitudinal gradients in central Idaho stream? . Canadian Journal of Fisheries and Aquatic Sciences , 63 : 63 – 78 .
   Web of Science ®Google Scholar
• Roni , P. , Beechie , T. J. , Bilby , R. E. , Leonetti , F. E. , Pollock , M. M. and Pess , G. R. 2002 . A review of stream restoration techniques and a hierarchical strategy for prioritizing restoration in Pacific Northwest watersheds . North American Journal of Fisheries Management , 22 : 1 – 20 .
   Web of Science ®Google Scholar
• Roper , B. B. , Dose , J. J. and Williams , J. E. 1997 . Stream restoration: Is fisheries biology enough? . Fisheries , 22 : 6 – 11 .
   Web of Science ®Google Scholar
• Roper , B. B. , Jarvis , B. and Kershner , J. L. 2007 . The role of natural vegetative disturbance in determining stream reach characteristics in central Idaho and western Montana . Northwest Science , 81 : 224 – 238 .
   Web of Science ®Google Scholar
• Roset , N. , Grenouillet , G. , Goffaux , D. , Pont , D. and Kestemont , P. 2007 . A review of existing fish assemblage indicators and methodologies . Fisheries Management and Ecology , 14 : 393 – 405 .
   Web of Science ®Google Scholar
• SAS Institute. 2004 . SAS OnlineDoc 9.1.3 Cary, North Carolina : SAS Institute .
   Google Scholar
• Saunders , W. C. and Fausch , K. D. 2007 . Improved grazing management increases terrestrial invertebrate inputs that feed trout in Wyoming rangeland streams . Transactions of the American Fisheries Society , 136 : 1216 – 1230 .
   Web of Science ®Google Scholar
• Scheuerell , M. D. , Hilborn , R. , Ruckelshaus , M. H. , Bartz , K. K. , Lagueux , K. M. , Haas , A. D. and Rawson , K. 2006 . The shiraz model: A tool for incorporating anthropogenic effects and fish-habitat relationships in conservation planning . Canadian Journal of Fisheries and Aquatic Sciences , 63 : 1596 – 1607 .
   Web of Science ®Google Scholar
• Shepard , B. B. 2004 . Factors that may be influencing non-native brook trout invasion and their displacement of native westslope cutthroat trout in three adjacent southwestern Montana streams . North American Journal of Fisheries Management , 24 : 1088 – 1100 .
   Web of Science ®Google Scholar
• Smogor , R. A. and Angermeier , P. L. 2001 . Determining a regional framework for assessing biotic integrity of Virginia streams . Transactions of the American Fisheries Society , 130 : 18 – 35 .
   Web of Science ®Google Scholar
• Stevens , D. L. Jr. and Olsen , A. R. 1999 . Spatially restricted surveys over time for aquatic resources . Journal of Agricultural Biological and Environmental Statistics , 4 : 415 – 428 .
   Web of Science ®Google Scholar
• Stoddard , J. L. , Herlihy , A. T. , Peck , D. V. , Hughes , R. M. , Whittier , T. R. and Tarquinio , E. 2008 . A process for creating multimetric indices for large-scale aquatic surveys . Journal of the North American Benthological Society , 27 : 878 – 891 .
   Web of Science ®Google Scholar
• Stoddard , J. L. , Larsen , D. P. , Hawkins , C. P. , Johnson , R. K. and Norris , R. H. 2006 . Setting expectations for the ecological condition of streams: The concept of reference condition . Ecological Applications , 16 : 1267 – 1276 .
   PubMed Web of Science ®Google Scholar
• Tejerina-Garro , F. , de Mérona , L. B. , Oberdorff , T. and Hugueny , B. 2006 . A fish-based index of large river quality for French Guiana (South America): Method and preliminary results . Aquatic Living Resources , 19 : 31 – 46 .
   Web of Science ®Google Scholar
• Thomson , J. R. , Taylor , M. P. , Fryirs , K. A. and Brierley , G. J. 2001 . A geomorphological framework for river characterization and habitat assessment . Aquatic Conservation Marine and Freshwater ecosystems , 11 : 373 – 389 .
   Web of Science ®Google Scholar
• Thurow , R. F. , Lee , D. C. and Rieman , B. E. 1997 . Distribution and status of seven native salmonids in the interior Columbia River basin and portions of the Klamath River and Great basins . North American Journal of Fisheries Management , 17 : 1094 – 1110 .
   Google Scholar
• Trombulak , S. C. and Frissell , C. A. 2000 . Review of ecological effects of roads on terrestrial and aquatic communities . Conservation Biology , 14 : 18 – 30 .
   Web of Science ®Google Scholar
• USFS (U.S. Forest Service). 1995 . Decision notice and finding of no significant impact; environmental assessment for the inland native fish strategy (INFISH) Available: http://www.fs.fed.us/r6/fish/9506-infish.pdf. (November 2008).
   Google Scholar
• USFS (U.S. Forest Service) and BLM (Bureau of Land Management). 1995 . Decision notice and finding of no significant impact; environmental assessment for the interim strategies for managing anadromous fish-producing waters in eastern Oregon and Washington, Idaho, and portions of California (PACFISH) Available: http://www.fs.fed.us/r6/fish/9502-pacfish.pdf. (November 2008).
   Google Scholar
• USFS (U.S. Forest Service) and USGS (U.S. Geological Survey). 2009 . Monitoring trends in burn severity USFS and USGS . Available: http://www.mtbs.gov. (November 2009).
   Google Scholar
• Vadas , R. L. and Orth , D. J. 2001 . Formulation of habitat suitability models for stream fish guilds: Do the standard methods work? . Transactions of the American Fisheries Society , 130 : 217 – 235 .
   Web of Science ®Google Scholar
• Whittier , T. R. , Hughes , R. M. , Stoddard , J. L. , Lomnicky , G. A. , Peck , D. V. and Herlihy , A. T. 2007 . A structured approach for developing indices of biotic integrity: Three examples for streams and rivers in the Western USA . Transactions of the American Fisheries Society , 136 : 718 – 735 .
   Web of Science ®Google Scholar
• Wohl , E. E. , Vincent , K. R. and Merritts , D. J. 1993 . Pool and riffle characteristics in relation to channel gradient . Geomorphology , 6 : 99 – 110 .
   Web of Science ®Google Scholar
• Woodsmith , R. D. and Buffington , J. M. 1996 . Multivariate geomorphic analysis of forest streams: Implications for assessment of land use impacts on channel condition . Earth Surface Processes and Landforms , 21 : 377 – 393 .
   Web of Science ®Google Scholar
• Anderson , H. V. 2008 . Transferability of models to predict selection of cover by coastal cutthroat trout in small streams in Western Oregon, USA Corvallis : Oregon State University . Master's thesis.
   Google Scholar
• Bateman , D. S. and Li , H. W. 2001 . Nest site selection by reticulate sculpin in two streams of different geologies in the central coast range of Oregon . Transactions of the American Fisheries Society , 130 : 823 – 832 .
   Web of Science ®Google Scholar
• Benda , L. , Poff , N. L. , Miller , D. , Dunne , T. , Reeves , G. , Pess , G. and Pollock , M. 2004 . The network dynamics hypothesis: How channel networks structure riverine habitats . Bioscience , 54 : 413 – 427 .
   Web of Science ®Google Scholar
• Bjornn , T. C. and Reiser , D. W. 1991 . “ Habitat requirements of salmonids in streams. ” . In Influences of forest and rangeland management on salmonid fishes and their habitats Edited by: Meehan , W. R. 83 – 138 . Bethesda, Maryland : American Fisheries Society . Special Publication 19
   Google Scholar
• Burnett , K. M. , Reeves , G. H. , Clarke , S. E. and Christiansen , K. R. 2006 . “ Comparing riparian and catchment influences on stream habitat in a forested, montane, landscape. ” . In Landscape influences on stream habitats and biological assemblages , Symposium 48 Edited by: Hughes , R. M. , Wang , L. and Seelbach , P. W. 175 – 197 . Bethesda, Maryland : American Fisheries Society .
   Google Scholar
• ESRI (Environmental Systems Research Institute). 2008 . Getting to know ArcView GIS, 3rd edition Redlands, California : ESRI .
   Google Scholar
• Heitke , J. D. , Archer , E. J. , Dugaw , D. D. , Bouwes , B. A. , Archer , E. A. , Henderson , R. C. and Kershner , J. L. 2007 . Effectiveness monitoring for streams and riparian areas: Sampling protocol for stream channel attributes Available: http://www.fs.fed.us/biology/fishecology/emp. (November 2008).
   Google Scholar
• Kershner , J. L. , Archer , E. K. , Coles-Ritchie , M. , Cowley , E. R. , Henderson , R. C. , Kratz , K. , Quimby , C. M. , Turner , D. L. , Ulmer , L. C. and Vinson , M. R. 2004a . Guide to effective monitoring of aquatic and riparian resources Fort Collins, Colorado : Rocky Mountain Research Station . General Technical Report RMRS-GTR-121
   Google Scholar
• Kershner , J. L. , Roper , B. B. , Bouwes , N. , Henderson , R. and Archer , E. 2004b . An analysis of stream habitat conditions in reference and managed watersheds on some federal lands within the Columbia River basin . North American Journal of Fisheries Management , 24 : 1363 – 1375 .
   Web of Science ®Google Scholar
• Knighton , D. 1998 . Fluvial forms and processes New York : Oxford University Press .
   Google Scholar
• Kondolf , M. 1997 . Application of the pebble count: Notes on purpose, method, and variants . Journal of the American Water Resources Association , 33 : 79 – 87 .
   Web of Science ®Google Scholar
• LANDFIRE. 2008 . Landscape, fire, and resource management planning tools project U.S. Geological Survey . Available: http://www.landfire.gov. (November 2008).
   Google Scholar
• May , C. L. and Gresswell , R. E. 2003 . Large wood recruitment and redistribution in headwater streams in the southern Oregon Coast Range, USA . Canadian Journal of Forestry , 33 : 1352 – 1362 .
   Web of Science ®Google Scholar
• Montgomery , D. R. , Buffington , J. M. , Smith , R. D. , Schmidt , K. M. and Pess , G. 1995 . Pool spacing in forest channels . Water Resources Research , 31 : 1097 – 1105 .
   Web of Science ®Google Scholar
• Nelson , R. L. , Platts , W. S. , Larsen , D. P. and Jensen , S. E. 1992 . Trout distribution and habitat in relation to geology and geomorphology in the North Fork Humboldt River Drainage, Northeastern Nevada . Transactions of the American Fisheries Society , 121 : 405 – 426 .
   Web of Science ®Google Scholar
• Northcote , T. G. and Ennis , G. L. 1994 . Mountain whitefish biology and habitat use in relation to compensation and improvement possibilities . Reviews in Fisheries Science , 2 : 347 – 371 .
   Google Scholar
• Platts , W. S. 1991 . “ Livestock grazing. ” . In Influences of forest and rangeland management on salmonid fishes and their habitats Edited by: Meehan , W. R. 389 – 424 . Bethesda, Maryland : American Fisheries Society . Special Publication 19
   Google Scholar
• Platts , W. S. , Torquemada , R. J. , McHenry , M. L. and Graham , C. K. 1989 . Changes in salmon spawning and rearing habitat from increased delivery of fine sediment to the South Fork Salmon River, Idaho . Transactions of the American Fisheries Society , 119 : 274 – 283 .
   Google Scholar
• PRISM (Parameter-elevation Regressions on Independent Slopes Model). 2004 . Spatial climate analysis service Corvallis : Oregon State University . Available: http//www.prism.oregonstate.edu. (November 2008).
   Google Scholar
• Reeves , G. H. , Benda , L. E. , Burnett , K. M. , Bisson , P. A. and Sedell , J. R. 1995 . “ A disturbance-based ecosystem approach to maintaining and restoring freshwater habitats of evolutionary significant units of anadromous salmonids in the Pacific Northwest. ” . In Evolution and the aquatic ecosystem: Defining unique units in population conservation , Symposium 17 Edited by: Nielsen , J. 334 – 349 . Bethesda, Maryland : American Fisheries Society .
   Google Scholar
• Roni , P. 2002 . Habitat use by fishes and Pacific giant salamanders in small western Oregon and Washington streams . Transactions of the American Fisheries Society , 131 : 743 – 761 .
   Web of Science ®Google Scholar
• Roni , P. 2003 . Responses of benthic fishes and giant salamanders to placement of large woody debris in small Pacific Northwest streams . North American Journal of Fisheries Management , 23 : 1087 – 1097 .
   Web of Science ®Google Scholar
• Roper , B. B. , Scarnecchia , D. L. and La Marr , T. J. 1994 . Summer distribution of and habitat use by Chinook salmon and steelhead with a major basin of the South Umqua River, Oregon . Transactions of the American Fisheries Society , 123 : 298 – 308 .
   Web of Science ®Google Scholar
• USFS (U.S. Forest Service). 1995 . USFS Geodata clearinghouse Salt Lake City, Utah : USFS . Available: http://svinetfc4.fs.fed.us/clearinghouse/index.html. (November 2008).
   Google Scholar
• USGS (U.S. Geological Survey). 1999 . National elevation dataset Sioux Falls, South Dakota : USGS . Available: http://ned.usgs.gov/. (November 2008).
   Google Scholar
• USGS (U.S. Geological Survey). 2000 . The national hydrography dataset: Concepts and contents Available: http://nhd.usgs.gov/. (February 2000).
   Google Scholar
• USGS (U.S. Geological Survey). 2005 . Integrated geologic map databases for the United States Denver : USGS . Available: http://ngmdb.usgs.gov. (November 2008).
   Google Scholar
• Watson , G. and Hillman , T. W. 1997 . Factors affecting the distribution and abundance of bull trout: An investigation at hierarchical scales . North American Journal of Fisheries Management , 17 : 237 – 252 .
   Google Scholar
• Wynn , T. and Mostaghimi , S. 2006 . The effects of vegetation and soil type on streambank erosion, southwestern Virginia, USA . Journal of the American Water Resources Association , 42 : 69 – 82 .
   Web of Science ®Google Scholar