Pathogenesis of mucosal biofilm infections: challenges and progress

References

• Costerton JW, Stewart PS, Greenberg EP. Bacterial biofilms: a common cause of persistent infections. Science284(21), 1318–1322 (1999).
   PubMed Web of Science ®Google Scholar
• Post JC, Stoodley P, Hall-Stoodley L, Ehrlich GD. The role of biofilms in otolaryngologic infections. Curr. Opin. Otolaryngol. Head Neck Surg.12(3), 185–190 (2004).
   PubMedGoogle Scholar
• Post JC, Hiller NL, Nistico L, Stoodley P, Ehrlich GD. The role of biofilms in otolaryngologic infections: update 2007. Curr. Opin. Otolaryngol. Head Neck Surg.15(5), 347–351 (2007).
   PubMedGoogle Scholar
• Stoodley P, Kathju S, Hu F Z et al. Molecular and imaging techniques for bacterial biofilms in arthroplastic joint infections. Clin. Orthop. Relat. Res.437, 31–40 (2005).
   Google Scholar
• Singh PK, Parsek MR, Greenberg EP, Welsh MJ. A component of innate immunity prevents bacterial biofilm development. Nature417(6888), 552–555 (2002).
   PubMed Web of Science ®Google Scholar
• Swidinski A, Weber J, Loening-Baucke V, Hale LP, Lochs H. Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease. J. Clin. Microbiol.43(7), 3380–3389 (2005).
   PubMedGoogle Scholar
• Ehrlich GD, Veeh R, Wang X et al. Mucosal biofilm formation on middle ear mucosa in the Chinchilla model of otitis media. JAMA287(13), 1710–1715 (2007).
   Google Scholar
• Hall-Stoodley L, Hu FZ, Gieseke A et al. Direct detection of bacterial biofilms on the middle-ear mucosa of children with chronic otitis media. JAMA296(2), 202–211 (2006).
   PubMed Web of Science ®Google Scholar
• Jansen AM, Lockatell V, Johnson DE, Mobley HL. Mannose-resistant Proteus-like fimbriae are produced by most Proteus mirabilis strains infecting the urinary tract, dictate the in vivo localization of bacteria, and contribute to biofilm formation. Infect. Immun.72(12), 7294–7305 (2004).
   PubMed Web of Science ®Google Scholar
• Oggioni MR, Trappetti C, Kadioglu A et al. Switch from planktonic to sessile life: a major event in pneumococcal pathogenesis. Mol. Microbiol.61(5), 1196–1210 (2006).
   PubMed Web of Science ®Google Scholar
• Domingue PA, Sadhu K, Costerton JW, Bartlett K, Chow AW. The human vagina: normal flora considered as an in situ tissue-associated, adherent biofilm. Genitourin. Med.67(3), 226–231 (1991).
   PubMedGoogle Scholar
• Akiyama H, Morizane S, Yamasaki O, Oono T, Iwatsuki K. Assessment of Streptococcus pyogenes microcolony formation in infected skin by confocal laser scanning microscopy. J. Dermatol. Sci.32(3), 193–199 (2003).
   PubMed Web of Science ®Google Scholar
• Scaramuzzino DA, McNiff JM, Bessen DE. Humanized in vivo model for streptococcal impetigo. Infect. Immun.68(5), 2880–2887 (2000).
   PubMedGoogle Scholar
• Coticchia J, Zuliani G, Coleman C et al. Biofilm surface area in the pediatric nasopharynx: chronic rhinosinusitis vs obstructive sleep apnea. Arch. Otolaryngol. Head Neck Surg.133(2), 110–114 (2007).
   PubMed Web of Science ®Google Scholar
• Uppuluri P, Sarmah B, Chaffin WL. Candida albicans SNO1 and SNZ1 expressed in stationary-phase planktonic yeast cells and base of biofilm. Microbiology152 (7), 2031–2038 (2006).
   PubMed Web of Science ®Google Scholar
• Macfarlane S, Dillon JF. Microbial biofilms in the human gastrointestinal tract. J. Appl. Microbiol.102(5), 1187–1196 (2007).
   PubMedGoogle Scholar
• Ehrlich GD, Veeh R, Wang X et al. Mucosal biofilm formation on middle-ear mucosa in the chinchilla model of otitis media. JAMA287(13), 1710–1715 (2002).
   PubMed Web of Science ®Google Scholar
• Inoue H, Kudo SE, Shiokawa A. Technology insight: laser-scanning confocal microscopy and endocytoscopy for cellular observation of the gastrointestinal tract. Nat. Clin. Pract. Gastroenterol. Hepatol.2(1), 31–37 (2005).
   PubMedGoogle Scholar
• Donlan RM, Costerton J. Biofilms: survival mechanisms of clinically relevant microorganisms. Clin. Microbiol. Rev.15(2), 167–193 (2002).
   PubMed Web of Science ®Google Scholar
• Kawaguchi T, Decho AW. in situ microspatial imaging using two-photon and confocal laser scanning microscopy of bacteria and extracellular polymeric secretions (EPS) within marine stromatolites. Mar. Biotechnol.4, 127–131 (2002).
   PubMedGoogle Scholar
• Daims H, Wagner M. Quantification of uncultured microorganisms by fluorescence microscopy and digital image analysis. Appl. Microbiol. Biotechnol.75(2), 237–248 (2007).
   PubMedGoogle Scholar
• Cross SE, Kreth J, Zhu L et al. Atomic force microscopy study of the structure-function relationships of the biofilm-forming bacterium Streptococcus mutans.Nanotechnology17, S1–S7 (2006).
   PubMed Web of Science ®Google Scholar
• Yang Y, Sreenivasan P, Subramanyam R, Cummins D. Multiparameter assessments to determine the effects of sugars and antimicrobials on a polymicrobial oral biofilm. Appl. Environ. Microbiol.72(10), 6734–6742 (2006).
   PubMed Web of Science ®Google Scholar
• Al-Fattani MA, Douglas LJ. Biofilm matrix of Candida albicans and Candida tropicalis: chemical composition and role in drug resistance. J. Med. Microbiol.55 (8), 999–1008 (2006).
   PubMed Web of Science ®Google Scholar
• Baillie GS, Douglas LJ. Matrix polymers of Candida biofilms and their possible role in biofilm resistance to antifungal agents. J. Antimicrob. Chemother.46(3), 397–403 (2000).
   PubMed Web of Science ®Google Scholar
• Jesaitis AJ, Franklin M, Berglund D et al. Compromised host defense on Pseudomonas aeruginosa biofilms: characterization of neutrophil and biofilm interactions. J Immunol.171(8), 4329–4339 (2003).
   PubMed Web of Science ®Google Scholar
• Walker TS, Tomlin KL, Worthen GS et al. Enhanced Pseudomonas aeruginosa biofilm development mediated by human neutrophils. Infect. Immun.73(6), 3693–3701 (2005).
   PubMed Web of Science ®Google Scholar
• Sutherland IW. The biofilm matrix – an immobilized but dynamic microbial environment. Trends Microbiol.9(5), 222–227 (2001).
   PubMed Web of Science ®Google Scholar
• Strathmann M, Wingender J, Flemming HC. Application of fluorescently labelled lectins for the visualization and biochemical characterization of polysaccharides in biofilms of Pseudomonas aeruginosa.J. Microbiol. Methods50(3), 237–248 (2002).
   PubMed Web of Science ®Google Scholar
• Martinez LR, Casadevall A. Specific antibody can prevent fungal biofilm formation and this effect correlates with protective efficacy. Infect. Immun.73(10), 6350–6362 (2005).
   PubMed Web of Science ®Google Scholar
• Costerton JW, Montanaro L, Arciola CR. Biofilm in implant infections: its production and regulation. Int. J. Artif. Organs.28(11), 1062–1068 (2005).
   PubMed Web of Science ®Google Scholar
• Zhao X, Daniels KJ, Oh SH et al.Candida albicans Als3p is required for wild-type biofilm formation on silicone elastomer surfaces. Microbiology152, 2287–2299 (2006).
   PubMed Web of Science ®Google Scholar
• Cho KH, Caparon MG. Patterns of virulence gene expression differ between biofilm and tissue communities of Streptococcus pyogenes. Mol. Microbiol.57(6), 1545–1556 (2005).
   PubMedGoogle Scholar
• Anderson GG, Palermo JJ, Schilling JD, Roth R, Heuser J, Hultgren SJ. Intracellular bacterial biofilm-like pods in urinary tract infections. Science301(5629), 105–107 (2003).
   PubMed Web of Science ®Google Scholar
• Mukherjee PK, Mohamed S, Chandra J et al. Alcohol dehydrogenase restricts the ability of the pathogen Candida albicans to form a biofilm on catheter surfaces through an ethanol-based mechanism. Infect. Immun.74(7), 3804–3816 (2006).
   PubMed Web of Science ®Google Scholar
• Villar CC, Kashleva H, Nobile CJ, Mitchell AP, Dongari-Bagtzoglou A. Mucosal tissue invasion by Candida albicans is associated with E-cadherin degradation, mediated by transcription factor Rim101p and protease Sap5p. Infect. Immun.75(5), 2126–2135 (2007).
   PubMed Web of Science ®Google Scholar
• Nett J, Andes D. Candida albicans biofilm development, modeling a host–pathogen interaction. Curr. Opin. Microbiol.9(4), 340–345 (2006).
   PubMed Web of Science ®Google Scholar
• Leid JG, Shirtliff ME, Costerton JW, Stoodley AP. Human leukocytes adhere to, penetrate, and respond to Staphylococcus aureus biofilms. Infect. Immun.70(11), 6339–6345 (2002).
   PubMed Web of Science ®Google Scholar
• McLaughlin RA, Hoogewerf AJ. Interleukin-1β-induced growth enhancement of Staphylococcus aureus occurs in biofilm but not planktonic cultures. Microb. Pathog.41(2-3), 67–79 (2006).
   PubMed Web of Science ®Google Scholar
• Macfarlane S, Furrie E, Cummings JH, Macfarlane GT. Chemotaxonomic analysis of bacterial populations colonizing the rectal mucosa in patients with ulcerative colitis. Clin. Infect. Dis.38(12), 1690–1699 (2004).
   PubMed Web of Science ®Google Scholar
• Kumamoto CA. A contact-activated kinase signals Candida albicans invasive growth and biofilm development. Proc. Natl Acad. Sci. USA102(15), 5576–5581 (2005).
   PubMed Web of Science ®Google Scholar
• Kolenbrander PE, Palmer RJ, Rickard AH et al. Bacterial interactions and successions during plaque development. Periodontol. 200042, 47–79 (2006).
   PubMed Web of Science ®Google Scholar
• Mencacci A, Cenci E, Bacci A, Montagnoli C, Bistoni F, Romani L. Cytokines in candidiasis and aspergillosis. Curr. Pharm. Biotechnol.1(3), 235–251 (2000).
   PubMedGoogle Scholar
• Mobberley-Schuman PS, Weiss AA. Influence of CR3 (CD11b/CD18) expression on phagocytosis of Bordetella pertussis by human neutrophils. Infect. Immun.73(11), 7317–7323 (2005).
   PubMed Web of Science ®Google Scholar
• Neuman E, Huleatt JW, Jack RM. Granulocyte-macrophage colony-stimulating factor increases synthesis and expression of CR1 and CR3 by human peripheral blood neutrophils. J. Immunol.145(10), 3325–3332 (1990).
   PubMedGoogle Scholar
• Willment JA, Lin HH, Reid DM et al. Dectin-1 expression and function are enhanced on alternatively activated and GM-CSF-treated macrophages and are negatively regulated by IL-10, examethasone, and lipopolysaccharide. J. Immunol.171(9), 4569–4573 (2003).
   PubMed Web of Science ®Google Scholar
• Hong W, Mason K, Jurcisek J, Novotny L, Bakaletz LO, Swords WE. Phosphorylcholine decreases early inflammation and promotes the establishment of stable biofilm communities of nontypeable Haemophilus influenzae strain 86–028NP in a Chinchilla model of otitis media. Infect. Immun.75(2), 958–965 (2007).
   PubMed Web of Science ®Google Scholar
• Chandra J, McCormick TS, Imamura Y, Mukherjee PK, Ghannoum MA. Interaction of Candida albicans with adherent human peripheral blood mononuclear cells increases C. albicans biofilm formation and results in differential expression of pro- and anti-inflammatory cytokines. Infect. Immun.75(5), 2612–2620 (2007).
   PubMed Web of Science ®Google Scholar
• Ellerbroek PM, Walenkamp AM, Hoepelman AI, Coenjaerts FE. Effects of the capsular polysaccharides of Cryptococcus neoformans on phagocyte migration and inflammatory mediators. Curr. Med. Chem.11(2), 253–266 (2004).
   PubMed Web of Science ®Google Scholar
• Stewart PS, Costerton JW. Antibiotic resistance of bacteria in biofilms. Lancet358(9276), 135–138 (2001).
   PubMed Web of Science ®Google Scholar
• Mah TC, O’Toole GA. Mechanisms of biofilm resistance to antimicrobial agents. Trends Microbiol.9(1), 34–39 (2001).
   PubMed Web of Science ®Google Scholar
• Gilbert P, Allison DG, McBain AJ. Biofilms in vitro and in vivo: do singular mechanisms imply cross-resistance? J Appl. Microbiol.92, 98S–110S (2002).
   PubMed Web of Science ®Google Scholar
• Keren I, Kaldalu N, Spoering A, Wang Y, Lewis K. Persister cells and tolerance to antimicrobials. FEMS Microbiol. Lett.230(1), 13–18 (2004).
   PubMed Web of Science ®Google Scholar
• Ehrlich GD, Hu FZ, Shen K, Stoodley P, Post JC. Bacterial plurality as a general mechanism driving persistence in chronic infections. Clin. Orthop. Relat. Res.437, 20–24 (2005).
   Google Scholar
• Martinez LR, Bryan RA, Apostolidis C, Morgenstern A, Casadevall A, Dadachova E. Antibody-guided a radiation effectively damages fungal biofilms. Antimicrob. Agents Chemother.50(6), 2132–2136 (2006).
   PubMed Web of Science ®Google Scholar
• Martinez LR, Christaki E, Casadevall A. Specific antibody to Cryptococcus neoformans glucurunoxylomannan antagonizes antifungal drug action against cryptococcal biofilms in vitro. J. Infect. Dis.194(2), 261–266 (2006).
   PubMed Web of Science ®Google Scholar
• Akiyama H, Oono T, Huh WK et al. Actions of gluco-oligosaccharide against Staphylococcus aureus. J. Dermatol.29(9), 580–586 (2002).
   PubMed Web of Science ®Google Scholar
• Gilbert P, Maira-Litran T, McBain AJ, Rickard AH, Whyte FW. The physiology and collective recalcitrance of microbial biofilm communities. Adv. Microb. Physiol.46, 202–256 (2002).
   PubMed Web of Science ®Google Scholar
• Nicolatou-Galitis O, Dardoufas K, Markoulatos P et al. Oral pseudomembranous candidiasis, herpes simplex virus-1 infection, and oral mucositis in head and neck cancer patients receiving radiotherapy and granulocyte-macrophage colony-stimulating factor (GM–CSF) mouthwash. J. Oral Pathol. Med.30(8), 471–480 (2001).
   PubMed Web of Science ®Google Scholar
• Green CB, Cheng G, Chandra J et al. RT-PCR detection of Candida albicans ALS gene expression in the reconstituted human epithelium (RHE) model of oral candidiasis and in model biofilms. Microbiology150, 267–275 (2004).
   PubMed Web of Science ®Google Scholar
• Dongari-Bagtzoglou A, Kashleva H. Development of a novel three-dimensional in vitro model of oral Candida infection. Microb. Pathog.40(6), 271–278 (2006).
   PubMed Web of Science ®Google Scholar