References
- Pandey A, Mann M. Proteomics to study genes and genomes. Nature405, 837–846 (2000).
- Langella O, Zivy M, Joets J. The PROTICdb database for 2-DE proteomics. Methods Mol. Biol.355, 279–303 (2007).
- Stanislaus R, Chen C, Franklin J, Arthur J, Almeida JS. AGML Central: web based gel proteomic infrastructure. Bioinformatics21, 1754–1757 (2005).
- Jones A, Hunt E, Wastling JM, Pizarro A, Stoeckert CJ Jr. An object model and database for functional genomics. Bioinformatics20, 1583–1590 (2004).
- Omenn GS. Advancement of biomarker discovery and validation through the HUPO Plasma Proteome Project. Dis. Markers20, 131–134 (2004).
- Haab BB, Geierstanger BH, Michailidis G et al. Immunoassay and antibody microarray analysis of the HUPO Plasma Proteome Project reference specimens: systematic variation between sample types and calibration of mass spectrometry data. Proteomics5(13), 3278–3291 (2005).
- Adkins JN, Monroe ME, Auberry KJ et al. A proteomic study of the HUPO Plasma Proteome Project’s pilot samples using an accurate mass and time tag strategy. Proteomics5(13), 3454–3466 (2005).
- Rai AJ, Stemmer PM, Zhang Z et al. Analysis of Human Proteome Organization Plasma Proteome Project (HUPO PPP) reference specimens using surface enhanced laser desorption/ionization-time of flight (SELDI-TOF) mass spectrometry: multi-institution correlation of spectra and identification of biomarkers. Proteomics5(13), 3467–3474 (2005).
- Li X, Gong Y, Wang Y et al. Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO Plasma Proteome Project. Proteomics5(13), 3423–3441 (2005).
- He P, He HZ, Dai J et al. The human plasma proteome: analysis of Chinese serum using shotgun strategy. Proteomics5(13), 3442–3453 (2005).
- Petricoin EF, Liotta LA. Proteomic approaches in cancer risk and response assessment. Trends Mol. Med.10, 59–64 (2004).
- Breen EJ, Hopwood FG, Williams KL, Wilkins MR. Monoisotopic peak harvesting via Poisson modelling. Electrophoresis20, 2243–2251 (2000).
- Breen EJ, Holstein WL, Hopwood FG, Smith PE, Thomas ML, Wilkins MR. Automated peak harvesting of MALDI-MS spectra for high-throughput proteomics. Spectroscopy17, 579–596 (2003).
- Yates JR 3rd, Eng JK, McCormack AL, Schieltz D. Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal. Chem.67, 1426–1436 (1995).
- Hunt SM, Thomas MR, Sebastian LT et al. Optimal replication and the importance of experimental design for gel-based quantitative proteomics. J. Proteome Res.4, 809–819 (2005).
- The UniProt Consortium. The Universal Protein Resource (UniProt). Nucleic Acids Res.36, D190–D195 (2008).
- Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. GenBank. Nucleic Acids Res.36, D25–D30 (2008).
- Clark T, Martin S, Liefeld T. Globally distributed object identification for biological knowledgebases. Brief. Bioinform.5, 59–70 (2004).
- Orchard S, Taylor C, Hermjakob H, Zhu W, Julian R, Apweiler R. Current status of proteomic standards development. Expert Rev. Proteomics1, 179–183 (2004).
- Taylor CF, Paton NW, Lilley KS et al. The Minimum Information About A Proteomics Experiment (MIAPE). Nat. Biotechnol.25(8), 887–893 (2007).
- Orchard S, Martens L, Tasman J, Binz PA, Albar JP, Hermjakob H. 6th HUPO Annual World Congress: Proteomics Standards Initiative Workshop 6–10 October 2007, Seoul, Korea. Proteomics8(7), 1331–1333 (2008).
- Reyzer ML, Caprioli RM. MALDI mass spectrometry for direct tissue analysis: a new tool for biomarker discovery. J. Proteome Res.4, 1138–1142 (2005).
- Gavin AC, Superti-Furga G. Protein complexes and proteome organization from yeast to man. Curr. Opin. Chem. Biol.7, 21–27 (2003).
- Zaia J. Mass spectrometry of oligosaccharides. Mass Spectrom. Rev.23(3), 161–227 (2004).
- Dunn WB, Bailey NJ, Johnson HE. Measuring the metabolome: current analytical technologies. Analyst130, 606–625 (2005).
Websites
- UniProt Archive UniParc www.ebi.ac.uk/uniparc/)
- Victorian Electronic Records Strategy www.prov.vic.gov.au/vers