RT-PCR/electrospray ionization mass spectrometry approach in detection and characterization of influenza viruses

References

• Julkunen I, Pyhala R, Hovi T. Enzyme immunoassay, complement fixation and hemagglutination inhibition tests in the diagnosis of influenza A and B virus infections. Purified hemagglutinin in subtype-specific diagnosis. J. Virol. Methods10(1), 75–84 (1985).
   PubMed Web of Science ®Google Scholar
• Chidlow G, Harnett G, Williams S, Levy A, Speers D, Smith DW. Duplex real-time RT-PCR assays for the rapid detection and identification of pandemic (H1N1) 2009 and seasonal influenza viruses A/H1, A/H3 and B. J. Clin. Microbiol.48(3), 862–866 (2010).
   PubMed Web of Science ®Google Scholar
• Pabbaraju K, Wong S, Wong AA et al. Design and validation of real-time reverse transcription-PCR assays for detection of pandemic (H1N1) 2009 virus. J. Clin. Microbiol.47(11), 3454–3460 (2009).
   PubMed Web of Science ®Google Scholar
• Whiley DM, Bialasiewicz S, Bletchly C et al. Detection of novel influenza A(H1N1) virus by real-time RT-PCR. J. Clin. Virol.45(3), 203–204 (2009).
   PubMed Web of Science ®Google Scholar
• Yang JR, Lo J, Liu JL et al. Rapid SYBR green I and modified probe real-time reverse transcription-PCR assays identify influenza H1N1 viruses and distinguish between pandemic and seasonal strains. J. Clin. Microbiol.47(11), 3714–3716 (2009).
   PubMed Web of Science ®Google Scholar
• Bright RA, Medina MJ, Xu Xet al. Incidence of adamantane resistance among influenza A (H3N2) viruses isolated worldwide from 1994 to 2005: a cause for concern. Lancet366, 1175–1814 (2005).
   PubMed Web of Science ®Google Scholar
• Kessler N, Ferraris O, Palmer K, Marsh W, Steel A. Use of the DNA flow-thru chip, a three-dimensional biochip, for typing and subtyping of influenza viruses. J. Clin. Microbiol.42(5), 2173–2185 (2004).
   PubMed Web of Science ®Google Scholar
• Metzgar D, Myers CA, Russell KL et al. Single assay for simultaneous detection and differential identification of human and avian influenza virus types, subtypes, and emergent variants. PLoS ONE5(2), e8995 (2010).
   PubMed Web of Science ®Google Scholar
• Ecker DJ, Sampath R, Blyn LB et al. Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance. Proc. Natl Acad. Sci. USA102(22), 8012–8017 (2005).
   PubMed Web of Science ®Google Scholar
• Ecker DJ, Drader J, Gutierrez J et al. The Ibis T5000 Universal Biosensor: an automated platform for pathogen identification and strain typing. J. Assoc. Lab. Automat.11(6), 341–351 (2006).
   Google Scholar
• Hofstadler SA, Sampath R, Blyn LB et al. TIGER: the universal biosensor. Int. J. Mass Spectrom.242, 23–41 (2005).
   Web of Science ®Google Scholar
• Sampath R, Russell KL, Massire C et al. Global surveillance of emerging Influenza virus genotypes by mass spectrometry. PLoS ONE2(5), e489 (2007).
   PubMed Web of Science ®Google Scholar
• Sampath R, Hall TA, Massire C et al. Rapid identification of emerging infectious agents using PCR and electrospray ionization mass spectrometry. Ann. NY Acad. Sci.1102, 109–120 (2007).
   PubMed Web of Science ®Google Scholar
• Dawson ED, Moore CL, Smagala JA et al. MChip: a tool for influenza surveillance. Anal. Chem.78(22), 7610–7615 (2006).
   PubMedGoogle Scholar
• Mehlmann M, Bonner AB, Williams JV et al. Comparison of the MChip to viral culture, reverse transcription-PCR, and the QuickVue influenza A+B test for rapid diagnosis of influenza. J. Clin. Microbiol.45(4), 1234–1237 (2007).
   PubMedGoogle Scholar
• Xu X, Smith CB, Mungall BA et al. Intercontinental circulation of human influenza A(H1N2) reassortant viruses during the 2001–2002 influenza season. J. Infect. Dis.186(10), 1490–1493 (2002).
   PubMedGoogle Scholar
• Jiang Y, Hofstadler SA. A highly efficient and automated method of purifying and desalting PCR products for analysis by electrospray ionization mass spectrometry. Anal. Biochem.316(1), 50–57 (2003).
   PubMedGoogle Scholar
• Deyde VM, Sampath R, Garten RJ et al. Genomic signature-based identification of influenza a viruses using electro-spray ionization mass spectrometry (RT-PCR/ESI-MS) technology. PLoS ONE5(10), e13293 (2010).
   PubMed Web of Science ®Google Scholar
• Holmes EC, Ghedin E, Miller N et al. Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses. PLoS Biol.3(9), e300 (2005).
   Web of Science ®Google Scholar
• Simonsen L, Viboud C, Grenfell BT et al. The genesis and spread of reassortment human influenza A/H3N2 viruses conferring adamantane resistance. Mol. Biol. Evol.24(8), 1811–1820 (2007).
   PubMed Web of Science ®Google Scholar
• Deyde VM, Garten R, Sheu TG, Gubareva LV, Klimov AI. Letter to the Editor: reply to Saito et al.J. Infect. Dis.197, 632–633 (2008).
   Web of Science ®Google Scholar
• Nelson MI, Edelman L, Spiro DJ et al. Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States. PLoS Pathog.4(8), e1000133 (2008).
   Google Scholar
• Pabbaraju K, Ho KC, Wong S et al. Adamantane resistance in circulating human influenza A viruses from Alberta, Canada (1970–2007). Antiviral Res.79(2), 81–86 (2008).
   PubMed Web of Science ®Google Scholar
• Deyde V, Garten R, Sheu T et al. Genomic events underlying the changes in adamantane resistance among influenza A(H3N2) viruses during 2006–2008. Influenza Other Resp. Viruses3(6), 297–314 (2009).
   PubMedGoogle Scholar
• Cheng PK, Leung TW, Ho EC et al. Oseltamivir- and amantadine-resistant influenza viruses A (H1N1). Emerg. Infect. Dis.15(6), 966–968 (2009).
   PubMed Web of Science ®Google Scholar
• Cheng PK, To AP, Leung TW, Leung PC, Lee CW, Lim WW. Oseltamivir- and amantadine-resistant influenza virus A (H1N1). Emerg. Infect. Dis.16(1), 155–156 (2010).
   PubMed Web of Science ®Google Scholar
• Meijer A, Lackenby A, Hungnes O et al. Oseltamivir-resistant influenza virus A (H1N1), Europe, 2007–2008 season. Emerg. Infect. Dis.15(4), 552–560 (2009).
   PubMed Web of Science ®Google Scholar
• Sheu TG, Fry AM, Garten RJ et al. Dual resistance to adamantanes and oseltamivir among seasonal influenza A (H1N1) viruses: 2008–2010. J. Infect. Dis. (2010) (In press).
   Google Scholar
• Faix DJ, Sherman SS, Waterman SH. Rapid-test sensitivity for novel swine-origin influenza A (H1N1) virus in humans. N. Engl. J. Med.361(7), 728–729 (2009).
   PubMed Web of Science ®Google Scholar
• Metzgar D, Baynes D, Myers CA et al. Initial identification and characterization of an emerging zoonotic influenza virus prior to pandemic spread. J. Clin. Microbiol.48(11), 4228–4234 (2010).
   PubMed Web of Science ®Google Scholar
• Garten RJ, Davis CT, Russell CA et al. Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans. Science325(5937), 197–201 (2009).
   PubMed Web of Science ®Google Scholar
• Centers for Disease Control and Prevention (CDC). Swine influenza A (H1N1) infection in two children – southern California, March–April 2009. Morb. Mortal. Wkly Rep.58(15), 400–402 (2009).
   PubMedGoogle Scholar
• Eshoo MW, Whitehouse CA, Zoll ST et al. Direct broad-range detection of alphaviruses in mosquito extracts. Virology368(2), 286–295 (2007).
   PubMed Web of Science ®Google Scholar
• Eshoo MW, Whitehouse CA, Nalca A et al. Rapid and high-throughput pan-Orthopoxvirus detection and identification using PCR and mass spectrometry. PLoS ONE4(7), e6342 (2009).
   Google Scholar
• Smith GJ, Vijaykrishna D, Bahl J et al. Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature459(7250), 1122–1125 (2009).
   PubMed Web of Science ®Google Scholar
• Nelson MI, Holmes EC. The evolution of epidemic influenza. Nat. Rev. Genet.8(3), 196–205 (2007).
   PubMed Web of Science ®Google Scholar
• Alexander DJ. A review of avian influenza in different bird species. Vet. Microbiol.74, 3–13 (2000).
   PubMed Web of Science ®Google Scholar
• Fouchier RA, Munster V, Wallensten A et al. Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls. J. Virol.79, 2814–2822 (2005).
   PubMed Web of Science ®Google Scholar
• Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y. Evolution and ecology of influenza A viruses. Microbiol. Rev.56, 152–179 (1992).
   PubMedGoogle Scholar
• Ma W, Lager KM, Lekcharoensuk P et al. Viral reassortment and transmission after coinfection of pigs with c1assical H1N1 and triple reassortant H3N2 swine influenza viruses. J. Gen. Virol.91(Pt 9), 2314–2321 (2010).
   PubMed Web of Science ®Google Scholar
• Chen LM, Davis CT, Zhou H, Cox NJ, Donis RO. Genetic compatibility and virulence of reassortants derived from contemporary avian H5N1 and human H3N2 influenza A viruses. PLoS Pathog.4(5), e1000072 (2008).
   PubMed Web of Science ®Google Scholar
• Jackson S, Van HN, Chen LM et al. Reassortment between avian H5N1 and human H3N2 influenza viruses in ferrets: a public health risk assessment. J. Virol.83(16), 8131–8140 (2009).
   PubMed Web of Science ®Google Scholar
• Li C, Hatta M, Nidom CA et al. Reassortment between avian H5N1 and human H3N2 influenza viruses creates hybrid viruses with substantial virulence. Proc. Natl Acad. Sci. USA107(10), 4687–4692 (2010).
   PubMed Web of Science ®Google Scholar
• Bastien N, Antonishyn NA, Brandt K et al. Human infection with a triple-reassortant swine influenza A(H1N1) virus containing the hemagglutinin and neuraminidase genes of seasonal influenza virus. J. Infect. Dis.201(8), 1178–1182 (2010).
   PubMedGoogle Scholar
• Ecker DJ, Massire C, Blyn LB et al. Molecular genotyping of microbes by multilocus PCR and mass spectrometry: a new tool for hospital infection control and public health surveillance. Methods Mol. Biol.551, 71–87 (2009).
   PubMedGoogle Scholar
• Endimiani A, Hujer KM, Hujer AM et al. Rapid identification of bla KPC-possessing Enterobacteriaceae by PCR/electrospray ionization-mass spectrometry. J. Antimicrob. Chemother.65, 1833–1834 (2010).
   PubMedGoogle Scholar
• Hall TA, Sampath R, Blyn LB et al. Rapid molecular genotyping and clonal complex assignment of Staphylococcus aureus isolates by PCR coupled to electrospray ionization-mass spectrometry. J. Clin. Microbiol.47, 1733–1741 (2009).
   PubMed Web of Science ®Google Scholar