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Editorial

The ‘sequence everything’ approach and personalized clinical decision challenges

, &
Pages 319-322 | Published online: 09 Jan 2014

References

  • Kahvejian A, Quackenbush J, Thompson JF. What would you do if you could sequence everything? Nat. Biotechnol.26(10), 1125–1133 (2008).
  • Hawkins RD, Hon GC, Ren B. Next-generation genomics: an integrative approach. Nat. Rev. Genet.11(7), 476–486 (2010).
  • Metzker ML. Sequencing technologies – the next generation. Nat. Rev. Genet.11(1), 31–46 (2010).
  • Wheeler DA, Srinivasan M, Egholm M et al. The complete genome of an individual by massively parallel DNA sequencing. Nature452(7189), 872–876 (2008).
  • Bentley DR, Balasubramanian S, Swerdlow HP et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature456(7218), 53–59 (2008).
  • Wang J, Wang W, Li R et al. The diploid genome sequence of an Asian individual. Nature456(7218), 60–65 (2008).
  • Ley TJ, Mardis ER, Ding L et al. DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. Nature456(7218), 66–72 (2008).
  • Genomes project consortium. A map of human genome variation from population-scale sequencing. Nature467(7319), 1061–1073 (2010).
  • Hudson TJ, Anderson W, Artez A et al. International network of cancer genome projects. Nature464(7291), 993–998 (2010).
  • Ozsolak F, Milos PM. RNA sequencing: advances, challenges and opportunities. Nat. Rev. Genet.12(2), 87–98 (2011).
  • Lister R, Pelizzola M, Dowen RH et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature462(7271), 315–322 (2009).
  • Li Y, Zhu J, Tian G et al. The DNA methylome of human peripheral blood mononuclear cells. PLoS Biol.8(11), E1000533 (2010).
  • modENCODE Consortium, Roy S, Ernst J, Kharchenko PV et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science330(6012), 1787–1797 (2010).
  • Baylin SB, Jones PA. A decade of exploring the cancer epigenome – biological and translational implications. Nat. Rev. Cancer11(10), 726–734 (2011).
  • Simon MD, Wang CI, Kharchenko PV et al. The genomic binding sites of a noncoding RNA. Proc. Natl Acad. Sci. USA108(51), 20497–20502 (2011).
  • Yamashita R, Sathira NP, Kanai A et al. Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis. Genome Res.21(5), 775–789 (2011).
  • Goh XY, Rees JR, Paterson AL et al. Integrative analysis of array-comparative genomic hybridisation and matched gene expression profiling data reveals novel genes with prognostic significance in oesophageal adenocarcinoma. Gut60(10), 1317–1326 (2011).
  • Kasarskis A, Yang X, Schadt E. Integrative genomics strategies to elucidate the complexity of drug response. Pharmacogenomics12(12), 1695–1715 (2011).
  • Son JW, Jeong KJ, Jean WS et al. Genome-wide combination profiling of DNA copy number and methylation for deciphering biomarkers in non-small cell lung cancer patients. Cancer Lett.311(1), 29–37 (2011).
  • Roychowdhury S, Iyer MK, Robinson DR et al. Personalized oncology through integrative high-throughput sequencing: a pilot study. Sci. Transl. Med.3(111), 111ra121 (2011).
  • Stratton MR. Exploring the genomes of cancer cells: progress and promise. Science331(6024), 1553–1558 (2011).
  • Heng HH, Bremer SW, Stevens JB, Ye KJ, Liu G, Ye CJ. Genetic and epigenetic heterogeneity in cancer: a genome-centric perspective. J. Cell Physiol.220(3), 538–547 (2009).
  • Tran B, Dancey JE, Kamel-Reid S et al. Cancer genomics: technology, discovery, and translation. J. Clin. Oncol.30(6), 647–660 (2012).
  • Welch JS, Westervelt P, Ding L et al. Use of whole-genome sequencing to diagnose a cryptic fusion oncogene. JAMA305(15), 1577–1584 (2011).
  • Prensner JR, Iyer MK, Balbin OA et al. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat. Biotechnol.29(8), 742–749 (2011).
  • Mateos-Langerak J, Goetze S, Leonhardt H, Cremer T, van Driel R, Lanctot C. Nuclear architecture: Is it important for genome function and can we prove it? J. Cell Biochem.102(5), 1067–1075 (2007).
  • Schneider R, Grosschedl R. Dynamics and interplay of nuclear architecture, genome organization, and gene expression. Genes Dev.21(23), 3027–3043 (2007).
  • Lieberman-Aiden E, van Berkum NL, Williams L et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science326(5950), 289–293 (2009).
  • Heng HH, Liu G, Stevens JB et al. Decoding the genome beyond sequencing: the new phase of genomic research. Genomics98(4), 242–252 (2011).

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