284
Views
11
CrossRef citations to date
0
Altmetric
Genetic Resources Evaluation

The QTL Analysis of RuBisCO in Flag Leaves and Non-Structural Carbohydrates in Leaf Sheaths of Rice Using Chromosome Segment Substitution Lines and Backcross Progeny F2 Populations

, , , &
Pages 224-232 | Received 21 Jul 2008, Accepted 28 Oct 2008, Published online: 03 Dec 2015

References

  • Ando, I. 2005. Current activities and direction of rice breeding with marker-assisted selection (MAS). Res. J. Food. Agr. 28 : 10–15*.
  • Aoki, N., Hirose, T., Scofield, G.N., Whitfeld, P.R. and Furbank, R. T. 2003. The sucrose transporter gene family in rice. Plant Cell Physiol. 44 : 223–232.
  • Cold Spring Harbor Laboratory and Cornell University. 2007. GRAMENE Genome Browser. [Online]. Available at www.gramene.org/(accessed 1 April 2006; verified 21 April 2008). GRAMENE Database, Ithaca.
  • Cook, M.G. and Evans, L.T. 1983. Some physiological aspects of the domestication and improvement of rice (Oryza spp.). Field Crops Res. 6 : 219–238.
  • Ebitani, T., Takeuchi, Y., Nonoue, Y., Yamamoto, T., Takeuchi, K. and Yano, M. 2005. Construction and evaluation of chromosome segment substitution lines carrying overlapping chromosome segments of indica rice cultivar Kasalath in a genetic background of japonica elite cultivar Koshihikari. Breed. Sci. 55 : 65–73.
  • Fukayama, H., Uchida, N., Azuma, T. and Yasuda, T. 1996. Relationship between photosynthetic activity and the amounts of Rubisco activase and Rubisco in rice leaves from emergence through senescence. Jpn. J. Crop Sci. 65 : 296–302.
  • Hayami, K. 1982. Studies on the physiological and ecological characteristics of high yielding rice variety with high fertilizer response. 1. The effect of nitrogen supply on the photosynthetic characteristics of high yielding rice variety with high fertilizer response. Bull. Tohoku Natl. Agric. Exp. Stn. 67 : 43–75.
  • He, H. Y., Koike, M., Ishimaru, T., Ohsugi, R. and Yamagishi, T. 2005. Temporal and spatial variations of carbohydrate content in rice leaf sheath and their varietal differences. Plant Prod. Sci. 8 : 546–552.
  • Hirose, T., Endler, A. and Ohsugi, R. 1999. Gene expression of enzymes for starch and sucrose metabolism and transport in leaf sheaths of rice (Oryza sativa L.) during heading period in relation to sink to source transition. Plant Prod. Sci. 2 : 178–183.
  • Ishii, R. 1995. Effects of physiological factors of individual leaves
  • on photosynthesis and respiration. 2. Leaf senescence. In T. Matsuo, K. Kumazawa, R. Ishii, K. Ishihara and H. Hirata eds., Science of the Rice Plant Vol. 2 physiology. Nobunkyo, Tokyo. 572–577.
  • Ishikawa, S., Ae, N. and Yano, M. 2005. Chromosomal regions with quantitative trait loci controlling cadmium concentration in brown rice (Oryza sativa). New Phytol. 168 : 345–350.
  • Ishimaru, K., Kobayashi, N., Ono, K., Yano, M. and Ohsugi, R. 2001. Are contents of rubisco, soluble protein and nitrogen in flag leaves of rice controlled by the same genetics? J. Exp. Bot. 52 : 1827–1833.
  • Jaiswal, P., Ni, J., Yap, I., Ware, D., Spooner, W., Youens-Clark, K., Ren, L., Liang, C., Zhao, W., Ratnapu, K., Faga, B., Canaran, P., Fogleman, M., Hebbard, C., Avraham, S., Schmidt, S., Casstevens, T.M., Buckler, E.S., Stein, L. and McCouch, S. 2006. Gramene: a bird’s eye view of cereal genomes. Nucl. Acids Res. 34D : 717–723.
  • Jiang, C.Z., Hirasawa, T. and Ishihara, K. 1988. Physiological and ecological characteristics of high yielding varieties in rice plants II. Leaf photosynthetic rates. Jpn. J. Crop Sci. 57 : 139–145.
  • Jiang, G.H., He, Y.Q., Xu, C.G., Li, X.H. and Zhang, Q. 2004. The genetic basis of stay-green in rice analyzed in a population of doubled haploid lines derived from an indica by japonica cross. Theor. Appl. Genet. 108 : 688–698.
  • Kanbe, T., Sasaki, H., Aoki, N., Yamagishi, T., Ebitani, T., Yano, M. and Ohsugi, R. 2008. Identification of QTLs toward improvement of plant type in rice (Oryza sativa L.) using Koshihikari / Kasalath chromosome segment substitution lines and backcross progeny F2 population. Plant Prod. Sci. 11 : 447–456.
  • Kenney-Hunt, J.P., Vaughn, T.T., Pletscher, L.S., Peripato, A., Routman, E., Cothran, K., Durand, D., Norgard, E., Perel, C. and Cheverud, J. M. 2006. Quantitative trait loci for body size components in mice. Mamm. Genome 17 : 526–537.
  • Kodani, T. and Kuroda, A. 2006. Relationship between content of nonstructural carbohydrates and starch assimilated to stem and leaf and the quality of rice variety ‘Yumemizuho’. Hokuriku Crop Sci. 41 : 39–41.
  • Kubo, T., Aida, Y., Nakamura, K., Tsunematsu, H., Doi, K. and Yoshimura, A. 2002. Reciprocal chromosome segment substitution series derived from japonica and indica cross of rice. Breed. Sci. 52 : 319–325.
  • Kurata, N. and Yamazaki, Y. 2006. Oryzabase. An integrated biological and genome information database for rice. Plant Physiol. 140 : 12–17.
  • Kusutani, A. 1988. Studies on ripening of rice varieties grown under low temperature III. Influence of dry matter production after heading stage on ripening. Jpn. J. Crop Sci. 57 : 298–304.
  • Makino, A., Mae, T. and Ohira, K. 1984. Changes in photosynthetic capacity in rice leaves from emergence through senescence. Analysis from ribrose-1,5-bisphosphate carboxylase and leaf conductance. Plant Cell Physiol. 25 : 511–521.
  • Makino, A., Mae, T. and Ohira, K. 1986. Colorimetric measurement of protein stained with Coomassie brilliant blue R on sodium dodecyl sulfate-polyacrylamide gel electrophoresis by eluting with formamide. Agric. Biol. Chem. 50 : 1911–1912.
  • Makino, A., Nakano, H. and Mae, T. 1994. Responses of ribulose-1,5-bisphosphate carboxylase, cytochrome f, and sucrose synthesis enzymes in rice leaves to leaf nitrogen and their relationships to photosynthesis. Plant Physiol. 105 : 173–179.
  • Makino, A. 2003. Rubisco and nitrogen relationships in rice: leaf photosynthesis and plant growth. Soil Sci. Plant Nutr. 49 : 319–327.
  • Matsushima, S. and Wada, G. 1959. Analysis of developmental factors determining yield and its application to yield prediction and culture improvement of lowland rice : XLVIII. studies on the mechanism of ripening (9). Jpn. J. Crop Sci. 27 : 201–203.
  • McCouch, S.R., Cho, Y.G., Yano, M., Paul, E., Blinstrub, M., Morishima, H. and Kinoshita, T. 1997. Suggestions for QTL nomenclature for rice. Rice Genet. Newsl. 14 : 11–13.
  • McCouch, S.R., Teytelman, L., Xu, Y., Lobos, K.B., Clare, K., Walton, M., Fu, B., Maghirang, R., Li, Z., Xing, Y., Zhang, Q., Kono, I., Yano, M., Fjellstorm, R., DeClerck, G., Schneider, D., Cartinhour, S., Ware, D. and Stein, L. 2002. Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) DNA Res. 9 : 199–207.
  • Nagata, K., Shimizu, H. and Terao, T. 2002. Quantitative trait loci for nonstructural carbohydrate accumulation in leaf sheaths and culms of rice (Oryza sativa L.) and their effects on grain filling. Breed. Sci. 52 : 275–283.
  • Nagata, K. 2006. Ecophysiological traits and genetic analysis of yield and ripening in high-yielding semi-dwarf indica rice varieties. Japan Agr. Res. Quart. 40 : 307–316.
  • Nakagawa, H., Tanaka, H., Tano, N. and Nagahata, H. 2006. Effects of leaf and panicle clipping on the occurrence of various types of chalky kernels in rice. Hokuriku Crop Sci. 41 ; 32–34.
  • Nakazawa, F., Tsunoda, K. and Torikura, H. 1990. On the photosynthetic characteristics of high yielding rice varieties. I. Leaf photosynthetic rate. Jpn. J. Crop Sci. 59 : 72–79.
  • National Bioresource Project and National Institute of Genetics. 2000. Trait genes search. [Online]. Available at www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp (accessed 12 May 2007). Oryzabase, Mishima.
  • Nurul Amin, S. M., Uchida, N., Azuma, T., Hatanaka, T. and Yasuda, T. 2002. Varietal differences between photosynthetic activity and the amounts of rubisco in rice (Oryza sativa L.) leaves at different nitrogen supply levels. Jpn. J. Trop. Agr. 46 : 162–165.
  • Ohsugi, R. 2003. Sink-source relationship and crop yield. Kagaku to Seibutsu 41 : 347–418.
  • Ohsugi, R. 2005. Carbon metabolism to improve sink and source function In K. Toriyama, K. L. Heong and B. Hardy eds., Rice is life: scientific perspectives for the 21st century. Proceedings of the World Rice Research Conference held in Tokyo and Tsukuba, Japan, 4–7 November 2004. [CD-ROM]. International Rice Research Institute, Los Banos and Japan International Research Center for Agricultural Sciences, Tsukuba.
  • Rice Genome Research Program. 2007. Generic genome browser version 1.66. [Online]. Available at rgp.dna.affrc. go.jp/whoga/index.html.en (accessed 1 April 2006; verified 21 April 2008). WhoGA Database, Tsukuba.
  • Rice Genome Resource Center. 2003. Koshihikari/Kasalath Chromosome Segment Substitution Lines (CSSLs) 39 lines. [Online]. Available at www.rgrc.dna.affrc.go.jp/index.html.en(accessed 1 April 2006). National Institute of Agrobiological Sciences, Tsukuba.
  • Sakata, K., Antonio, B. A., Mukai, Y., Nagasaki, H., Sakai, Y., Makino, K. and Sasaki, T. 2000. INE: a rice genome database with an integrated map view. Nucl. Acids Res. 28 : 97–101.
  • Sasaki, H., Ishii, R. and Kumura, A. 1986. Studies on the variety differences of single leaf photosynthesis in rice. I. Comparison of single leaf photosynthetic ratio in different growth stage. Jpn. J. Crop Sci. 55(Extra issue 2) : 83–84.
  • Sasaki, H., Aoki, N., Sakai, H., Hara, T., Uehara, N., Ishimaru, K. and Kobayashi, K. 2005. Effect of CO2 enrichment on translocation and partitioning of carbon at the early grainfilling stage in rice (Oryza sativa L.). Plant Prod. Sci. 8 : 8–15.
  • Senthilvel, S., Vinod, K. K., Malarvizhi, P. and Maheswaran, M. 2008. QTL and QTL × environment effects on agronomic and nitrogen acquisition traits in. rice. J. Integr. Plant Biol. 50 : 1108–1117.
  • Spreitzer, R.J. 1999. Question about the complexity of chloroplast ribrose-1,5-bisphosphate carboxylase/oxygenase. Photosynth. Res. 60 : 29–41.
  • Sumi, A., Hakoyama, S., Weng, J.H., Agata, W. and Takeda, T. 1996. Analysis of plant characteristics determining ear weight increase during the ripening period in rice (Oryza sativa L.). II. The role of the reserved carbohydrate at heading stage upon the receptive efficiency of assimilation products in spikelets. Jpn. J. Crop Sci. 65 : 214–221.
  • Uchida, N., Ito, R., and Murata, Y. 1980. Studies on the changes in photosynthetic activity of a crop leaf during its development and senescence. I. Changes in the developmental stage of a rice leaf. Jpn. J. Crop Sci. 49 : 127–134.
  • Wang, H., Qi, M.Q. and Cutler, A.J. 1993. A simple method of preparing plant samples for PCR. Nucl. Acids Res. 21 : 4153–4154.
  • Wang, S., Basten, C.J. and Zeng, Z.B. 2006. Windows QTL Cartographer 2.5. [Online]. Available at statgen.ncsu.edu/ qtlcart/WQTLCart.htm (accessed 1 April 2007). Department of Statistics, North Carolina State University, Raleigh.
  • Weng, J.H., Takeda, T., Agata, W. and Hakoyama, S. 1982. Studies on dry matter and grain production of rice plants I. influence of the reserved carbohydrate until heading stage and the assimilation products during the ripening period on grain production. Jpn. J. Crop Sci. 51 : 500–509.
  • Xu, Y.F., Ookawa, T. and Ishihara, K. 1997. Analysis of the photosynthetic characteristics of the high-yielding rice cultivar Takanari. Jpn. J. Crop Sci. 66 : 616–623.
  • Yamaguchi, Y., Tsukaguchi, T. and Inoue, K. 2006. Effect of the translocation of nonstructural carbohydrate in culm and leaf sheath on panicle weight increase and grain appearance in rice cultivar Koshihikari. Hokuriku Crop Sci. 41 : 35–38.