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Original Research

A six-mRNA prognostic model to predict survival in head and neck squamous cell carcinoma

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Pages 131-142 | Published online: 20 Dec 2018

References

  • ForastiereAKochWTrottiASidranskyDHead and neck cancerN Engl J Med2001345261890190011756581
  • TorreLABrayFSiegelRLFerlayJLortet-TieulentJJemalAGlobal cancer statistics, 2012CA Cancer J Clin20156528710825651787
  • GuoWChenXZhuLWangQA six-mRNA signature model for the prognosis of head and neck squamous cell carcinomaOncotarget20178559452829212247
  • GollinSMCytogenetic alterations and their molecular genetic correlates in head and neck squamous cell carcinoma: a next generation window to the biology of diseaseGenes Chromosomes Cancer2014531297299025183546
  • PfisterDGAngKKBrizelDMHead and neck cancersJ Natl Compr Canc Netw20119659665021636536
  • KamangarFDoresGMAndersonWFPatterns of cancer incidence, mortality, and prevalence across five continents: defining priorities to reduce cancer disparities in different geographic regions of the worldJ Clin Oncol200624142137215016682732
  • BensonELiREiseleDFakhryCThe clinical impact of HPV tumor status upon head and neck squamous cell carcinomasOral Oncol201450656557424134947
  • KatiyarSKEmerging phytochemicals for the prevention and treatment of head and neck cancerMolecules201621121610
  • AngKKHarrisJWheelerRHuman papillomavirus and survival of patients with oropharyngeal cancerN Engl J Med20103631243520530316
  • MengGMeiHTranscriptional dysregulation study reveals a core network involving the genesis for Alzheimer’s diseasebioRxiv2017240002
  • ZhanHXXuJWWangLWuDZhangGYHuSYFoxQ1 is a novel molecular target for pancreatic cancer and is associated with poor prognosisCurr Mol Med201515546947726122655
  • ZhengYZWenJCaoXDecreased mRNA expression of transcription factor forkhead box F2 is an indicator of poor prognosis in patients with resected esophageal squamous cell carcinomaMol Clin Oncol20153371371926137292
  • ClauditzTSWangCJGontarewiczAExpression of insulin-like growth factor II mRNA-binding protein 3 in squamous cell carcinomas of the head and neckJ Oral Pathol Med201342212513222643116
  • LangfelderPHorvathSWGCNA: an R package for weighted correlation network analysisBMC Bioinformatics20089155919114008
  • AndersSHuberWDifferential expression analysis for sequence count dataGenome Biol20101110R10620979621
  • LoveMAndersSHuberWDifferential analysis of count data: the DESeq2 packageGenome Biol201415118655010
  • LoveMAndersSHuberWPackage ‘DESeq2’2013
  • ZhouZLiuSZhangMOverexpression of topoisomerase 2-alpha confers a poor prognosis in pancreatic adenocarcinoma identified by co-expression analysisDig Dis Sci201762102790280028815403
  • BotíaJAVandrovcovaJForaboscoPAn additional k-means clustering step improves the biological features of WGCNA gene co-expression networksBMC Syst Biol20171114728403906
  • RahmaniBZimmermannMTGrillDERecursive indirect-paths modularity (RIP-M) for detecting community structure in RNA-Seq co-expression networksFront Genet201678027242890
  • GoemanJJL1 penalized estimation in the Cox proportional hazards modelBiom J2010521708419937997
  • LiQBaiHChenYA fully-automatic multiparametric radiomics model: towards reproducible and prognostic imaging signature for prediction of overall survival in glioblastoma multiformeSci Rep2017711433129085044
  • HaddadAQLuoJHKrabbeLMPrognostic value of tissue-based biomarker signature in clear cell renal cell carcinomaBJU Int2017119574174728075543
  • FriedmanJHastieTTibshiraniRglmnet: Lasso and elastic-net regularized generalized linear models (R package version)200914
  • LiHLiuJChenJA serum microRNA signature predicts trastuzumab benefit in HER2-positive metastatic breast cancer patientsNat Commun201891161429691399
  • KanehisaMGotoSKEGG: Kyoto encyclopedia of genes and genomesNucleic Acids Res2000281273010592173
  • SubramanianATamayoPMoothaVKGene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profilesProc Natl Acad Sci USA200510243155451555016199517
  • YuGWangLGHanYHeQYclusterProfiler: an R package for comparing biological themes among gene clustersOMICS201216528428722455463
  • CampRLDolled-FilhartMRimmDLX-tile: a new bioinformatics tool for biomarker assessment and outcome-based cut-point optimizationClin Cancer Res200410217252725915534099
  • TangKXuHPrognostic value of meta-signature miRNAs in renal cell carcinoma: an integrated miRNA expression profiling analysisSci Rep201551027225974855
  • LumleyTTherneauTThe survival packageR News2004412628
  • KassambaraAKosinskiMBiecekPsurvminer: Drawing survival curves using ‘ggplot2’ (R package version 0.3)2017 Available from: https://cran.r-project.org/web/packages/survminer/survminer.pdfAccessed December 06, 2018
  • HeagertyPSahaP2013survivalROC: Time-dependent ROC curve estimation from censored survival data (R package version 1.0)
  • Team RCR: A Language and Environment for Statistical Computing2013 Available from: http://softlibre.unizar.es/manuales/aplicaciones/r/fullrefman.pdfAccessed December 06, 2018
  • ErixonPOxelmanBReticulate or tree-like chloroplast DNA evolution in Sileneae (Caryophyllaceae)?Mol Phylogenet Evol200848131332518490181
  • KokkoLLHurmeSMaulaSMSignificance of site-specific prognosis of cancer stem cell marker CD44 in head and neck squamous-cell carcinomaOral Oncol201147651051621514878
  • LlerasRASmithRVAdrienLRUnique DNA methylation loci distinguish anatomic site and HPV status in head and neck squamous cell carcinomaClin Cancer Res201319195444545523894057
  • FakhryCWestraWHWangSJThe prognostic role of sex, race, and human papillomavirus in oropharyngeal and nonoropharyngeal head and neck squamous cell cancerCancer201712391566157528241096
  • ZhouZChengYJiangYTen hub genes associated with progression and prognosis of pancreatic carcinoma identified by co-expression analysisInt J Biol Sci201814212413629483831
  • YuanLChenLQianKCo-expression network analysis identified six hub genes in association with progression and prognosis in human clear cell renal cell carcinoma (ccRCC)Genom Data20171413214029159069
  • ZhangJXSongWChenZHPrognostic and predictive value of a microRNA signature in stage II colon cancer: a microRNA expression analysisLancet Oncol201314131295130624239208
  • GuoJCLiCQWangQYProtein-coding genes combined with long non-coding RNAs predict prognosis in esophageal squamous cell carcinoma patients as a novel clinical multi-dimensional signatureMol Biosyst201612113467347727714034
  • GeYZXinHLuTZMicroRNA expression profiles predict clinical phenotypes and prognosis in chromophobe renal cell carcinomaSci Rep201551032825981392
  • EyolEMurtagaAZhivkova-GalunskaMFew genes are associated with the capability of pancreatic ductal adenocarcinoma cells to grow in the liver of nude ratsOncol Rep20122862177218723007550
  • PannetierMChassotAAChaboissierMCPailhouxEInvolvement of FOXL2 and RSPO1 in ovarian determination, development, and maintenance in mammalsSex Dev201610416718427649556
  • LiuXLMengYHWangJLYangBBZhangFTangSJFOXL2 suppresses proliferation, invasion and promotes apoptosis of cervical cancer cellsInt J Clin Exp Pathol201474153424817949
  • NaikMExpression of Procollagen C Proteinase Enhancer Proteins in Human Trabecular Meshwork Cells and TissuesFort WorthUniversity of North Texas Health Science Center2013
  • FinkernagelFReinartzSLieberSThe transcriptional signature of human ovarian carcinoma macrophages is associated with extracellular matrix reorganizationOncotarget20167467533927659538
  • BourhisJMVadon-Le GoffSAfracheHProcollagen C-proteinase enhancer grasps the stalk of the C-propeptide trimer to boost collagen precursor maturationProc Natl Acad Sci USA2013110166394639923550162
  • KrólMPawlowskiKMSkierskiJTranscriptomic profile of two canine mammary cancer cell lines with different proliferative and anti-apoptotic potentialJ Physiol Pharmacol200960Suppl 195106
  • LimSBTANSJWan-TeckLLIMCTAn extracellular matrix-related prognostic and predictive indicator for early-stage non-small cell lung cancerNat Commun82017173429170406
  • ZhengLSYangJPCaoYSPINK6 promotes metastasis of naso-pharyngeal carcinoma via binding and activation of epithelial growth factor receptorCancer Res201777257958927671677
  • ThieryJPAcloqueHHuangRYNietoMAEpithelial-mesenchymal transitions in development and diseaseCell2009139587189019945376
  • YamaguchiKChikumiHShimizuADiagnostic and prognostic impact of serum-soluble UL16-binding protein 2 in lung cancer patientsCancer Sci201210381405141322587355
  • WennerbergEPfefferleAEkbladLHuman anaplastic thyroid carcinoma cells are sensitive to NK cell-mediated lysis via ULBP2/5/6 and chemoattract NK cellsClin Cancer Res201420225733574425212604
  • GuerraNTanYXJonckerNTNKG2D-deficient mice are defective in tumor surveillance in models of spontaneous malignancyImmunity200828457158018394936
  • ChenJZhuXXXuHFangHZZhaoJQExpression and prognostic significance of unique ULBPs in pancreatic cancerOnco Targets Ther201695271527927621649
  • BonnefontJLaforgeTPlastreOPrimate-specific RFPL1 gene controls cell-cycle progression through cyclin B1/Cdc2 degradationCell Death Differ201118229330320725088
  • ChenWLuJQinYRet finger protein-like 3 promotes tumor cell growth by activating telomerase reverse transcriptase expression in human lung cancer cellsOncotarget20145231190925481043
  • DeguchiADasKKXingSWOehlenBWeinsteinIBDown-Regulation of the cGMP/PKG Pathway in Primary Human Colon Cancers and Cancer Cell LinesProc Am Assoc Cancer Res2005465668
  • MartiniMDe SantisMCBracciniLGulluniFHirschEPI3K/AKT signaling pathway and cancer: an updated reviewAnn Med201446637238324897931
  • BoyerA-SWalterDSørensenCSDNA replication and cancer: from dysfunctional replication origin activities to therapeutic opportunitiesPaper presented at: Seminars in Cancer Biology2016
  • MacheretMHalazonetisTDDNA replication stress as a hallmark of cancerAnnu Rev Pathol20151042544825621662
  • ZhangYLWangRCChengKRingBZSuLRoles of Rap1 signaling in tumor cell migration and invasionCancer Biol Med20171419028443208
  • SiveenKSSikkaSSuranaRTargeting the STAT3 signaling pathway in cancer: role of synthetic and natural inhibitorsBiochim Biophys Acta20141845213615424388873