118
Views
19
CrossRef citations to date
0
Altmetric
Original Research

Integrated analysis of lncRNA-associated ceRNA network reveals potential biomarkers for the prognosis of hepatitis B virus-related hepatocellular carcinoma

, , , &
Pages 877-897 | Published online: 17 Jan 2019

References

  • ChenWZhengRBaadePDCancer statistics in China, 2015CA Cancer J Clin201666211513226808342
  • LiJHuangLYanJQiuMYanYLiver resection for hepatocellular carcinoma: personal experiences in a series of 1330 consecutive cases in ChinaANZ J Surg20188810E713E71729363237
  • LiYZhangZShiJRisk factors for naturally-occurring early-onset hepatocellular carcinoma in patients with HBV-associated liver cirrhosis in ChinaInt J Clin Exp Med2015811205121225785114
  • XiangLLiuKChenYAnalysis of Risk Factors Associated with the Development of Hepatocellular Carcinoma in Chronic HBV-Infected Chinese: A Meta-AnalysisInt J Environ Res Public Health2016136604
  • LinCLKaoJHRisk stratification for hepatitis B virus related hepatocellular carcinomaJ Gastroenterol Hepatol2013281101723094699
  • FanHZhangQZhaoXLvPLiuMTangHTranscriptomic profiling of long non-coding RNAs in hepatitis B virus-related hepatocellular carcinomaOncotarget2017839654216543429029442
  • MouYWangDXingRIdentification of long noncoding RNAs biomarkers in patients with hepatitis B virus-associated hepatocellular carcinomaCancer Biomark20182319510629991128
  • ZuoKKongLXueDYangYXieLThe expression and role of lncRNA AX800134 in hepatitis B virus-related hepatocellular carcinomaVirus Genes201854447548329789998
  • LvDWangYZhangYCuiPXuYDownregulated long non-coding RNA DREH promotes cell proliferation in hepatitis B virus-associated hepatocellular carcinomaOncol Lett20171422025203228789433
  • YangFZhangLHuoX-SongLong noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humansHepatology20115451679168921769904
  • SalmenaLPolisenoLTayYKatsLPandolfiPPA ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?Cell2011146335335821802130
  • LiYLiuGLiXDongHXiaoWLuSLong non-coding RNA SBF2-AS1 promotes hepatocellular carcinoma progression through regulation of miR-140-5p-TGFBR1 pathwayBiochem Biophys Res Commun201850342826283230115383
  • SuiJYangXQiWLong Non-Coding RNA Linc-USP16 Functions As a Tumour Suppressor in Hepatocellular Carcinoma by Regulating PTEN ExpressionCell Physiol Biochem20174431188119829179215
  • LvJFanHXZhaoXPLong non-coding RNA Unigene56159 promotes epithelial-mesenchymal transition by acting as a ceRNA of miR-140-5p in hepatocellular carcinoma cellsCancer Lett2016382216617527597739
  • MoYHeLLaiZLINC01287/miR-298/STAT3 feedback loop regulates growth and the epithelial-to-mesenchymal transition phenotype in hepatocellular carcinoma cellsJ Exp Clin Cancer Res20183711493001751
  • FanHLvPMuTLncRNA n335586/miR-924/CKMT1A axis contributes to cell migration and invasion in hepatocellular carcinoma cellsCancer Lett2018429899929753758
  • LanTMaWHongZWuLChenXYuanYLong non-coding RNA small nucleolar RNA host gene 12 (SNHG12) promotes tumorigenesis and metastasis by targeting miR-199a/b-5p in hepatocellular carcinomaJ Exp Clin Cancer Res20173611128073380
  • XieCRWangFZhangSLong Noncoding RNA HCAL Facilitates the Growth and Metastasis of Hepatocellular Carcinoma by Acting as a ceRNA of LAPTM4BMol Ther Nucleic Acids2017944045129246322
  • YangYChenLGuJRecurrently deregulated lncRNAs in hepatocellular carcinomaNat Commun201781442128194035
  • PoveySLoveringRBrufordEWrightMLushMWainHThe HUGO Gene Nomenclature Committee (HGNC)Human Genetics2001109667868011810281
  • NikolayevaORobinsonMDedgeR for differential RNA-seq and ChIP-seq analysis: an application to stem cell biologyMethods Mol Biol20141150457924743990
  • PollardKSDudoitSLaanMJMultiple testing procedures: the mult-test package and applications to genomicsGentlemanRCareyVJHuberWIrizarryRADudoitSBioinformatics and Computational Biology Solutions Using R and BioconductorNew YorkSpringer2005249271
  • SzklarczykDFranceschiniAWyderSSTRING v10: protein-protein interaction networks, integrated over the tree of lifeNucleic Acids Res201543D1D447D45225352553
  • KohlMWieseSWarscheidBCytoscape: software for visualization and analysis of biological networksMethods Mol Biol201169629130321063955
  • TangYLiMWangJPanYWuFXCytoNCA: a cytoscape plugin for centrality analysis and evaluation of protein interaction networksBiosystems2015127677225451770
  • BaderGDHogueCWAn automated method for finding molecular complexes in large protein interaction networksBMC Bioinformatics200341212525261
  • HuangDWShermanBTLempickiRASystematic and integrative analysis of large gene lists using DAVID bioinformatics resourcesNat Protoc200941445719131956
  • MaereSHeymansKKuiperMBiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networksBioinformatics200521163448344915972284
  • JeggariAMarksDSLarssonEmiRcode: a map of putative microRNA target sites in the long non-coding transcriptomeBioinformatics201228152062206322718787
  • DweepHGretzNmiRWalk2.0: a comprehensive atlas of microRNA-target interactionsNat Methods201512869726226356
  • DavisAPGrondinCJJohnsonRJSciakyDThe Comparative Toxicogenomics Database: update 2017Nucleic Acids Res201745D1D972D97827651457
  • YooSWangWWangQA pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosisBMC Med201715121429212479
  • HuangQLinBLiuHRNA-Seq analyses generate comprehensive transcriptomic landscape and reveal complex transcript patterns in hepatocellular carcinomaPLoS One2011610e2616822043308
  • YangFZhangLHuoXSLong noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humansHepatology20115451679168921769904
  • ZhengBYGaoWYHuangXYHBx promotes the proliferative ability of HL-7702 cells via the COX-2/Wnt/β-catenin pathwayMol Med Rep20181768432843829693167
  • XiaYChengXLiYValdezKChenWLiangTJHepatitis B virus deregulates cell cycle to promote viral replication and a premalignant phenotypeJ Virol20189219 e00722–18pii
  • LuoQLiXLiJMiR-15a is underexpressed and inhibits the cell cycle by targeting CCNE1 in breast cancerInt J Oncol20134341212121823900351
  • FangYYuHLiangXXuJCaiXChk1-induced CCNB1 overexpression promotes cell proliferation and tumor growth in human colorectal cancerCancer Biol Ther20141591268127924971465
  • DimovaDKDysonNJThe E2F transcriptional network: old acquaintances with new facesOncogene200524172810282615838517
  • SungWKZhengHLiSGenome-wide survey of recurrent HBV integration in hepatocellular carcinomaNat Genet201244776576922634754
  • ChinREarnest-SilveiraLKoeberleinBModulation of MAPK pathways and cell cycle by replicating hepatitis B virus: Factors contributing to hepatocarcinogenesisJ Hepatol200747332533717512084
  • ChengPLiYYangLHepatitis B virus X protein (HBx) induces G2/M arrest and apoptosis through sustained activation of cyclin B1-CDK1 kinaseOncol Rep20092251101110719787227
  • GnaniDRomitoIArtusoSFocal adhesion kinase depletion reduces human hepatocellular carcinoma growth by repressing enhancer of zeste homolog 2Cell Death Differ201724588990228338656
  • FurutaMKozakiKTanimotoKThe tumor-suppressive miR-497-195 cluster targets multiple cell-cycle regulators in hepatocellular carcinomaPLoS One201383e6015523544130
  • ZhangXHuSZhangXMicroRNA-7 arrests cell cycle in G1 phase by directly targeting CCNE1 in human hepatocellular carcinoma cellsBiochem Biophys Res Commun201444331078108424370822
  • ZhangYHuangWRanYmiR-582-5p inhibits proliferation of hepatocellular carcinoma by targeting CDK1 and AKT3Tumour Biol201536118309831626002580
  • WangPChenSFangHmiR-214/199a/199a* cluster levels predict poor survival in hepatocellular carcinoma through interference with cell-cycle regulatorsOncotarget20167192994526498144
  • FangZQLiMCZhangYQLiuXGMiR-490-5p inhibits the metastasis of hepatocellular carcinoma by down-regulating E2F2 and ECT2J Cell Biochem2018119108317832429932246
  • ZhuHRHuangRZYuXNMicroarray expression profiling of microRNAs reveals potential biomarkers for hepatocellular carcinomaTohoku J Exp Med20182452899829899182
  • YanYLuoYCWanHYMicroRNA-10a is involved in the metastatic process by regulating Eph tyrosine kinase receptor A4-mediated epithelial-mesenchymal transition and adhesion in hepatoma cellsHepatology201357266767722996586
  • ZhouHCFangJHShangLRMicroRNAs miR-125b and miR-100 suppress metastasis of hepatocellular carcinoma by disrupting the formation of vessels that encapsulate tumour clustersJ Pathol2016240445046027577856
  • YeTDingWWangNHuangHPanYWeiALong noncoding RNA linc00346 promotes the malignant phenotypes of bladder cancerBiochem Biophys Res Commun20174911798428705739
  • ZhangJFanDJianZChenGGLaiPBCancer specific long non-coding RNAs show differential expression patterns and competing endogenous RNA potential in hepatocellular carcinomaPLoS One20151010e014104226492393
  • LiuHLiJKoiralaPLong non-coding RNAs as prognostic markers in human breast cancerOncotarget2016715205842059626942882
  • AkutaNSuzukiFKobayashiMCirculating microRNA-122 levels are important predictor of hepatitis B virus surface antigen seroclearanceJ Med Virol201890101586159229896794
  • NieQHGaoLHChengYQHepatitis C virus infection of human cytotrophoblasts cultured in vitroJ Med Virol201284101586159222930506
  • ZhangMHNiuHLiZHuoRTWangJMLiuJActivation of PI3K/AKT is involved in TINAG-mediated promotion of proliferation, invasion and migration of hepatocellular carcinomaCancer Biomark2018231334329991125