Gene expression profile of human lung in a relatively early stage of COPD with emphysema

References

• Global Initiative for Chronic Obstructive Lung Disease (GOLD)Global strategy for the diagnosis, management and prevention of chronic obstructive pulmonary disease2017 Available from: http://goldcopd.org/Accessed February 10, 2017
   Google Scholar
• McdonoughJEYuanRSuzukiMSmall-airway obstruction and emphysema in chronic obstructive pulmonary diseaseN Engl J Med2011365171567157522029978
   PubMed Web of Science ®Google Scholar
• HarunaAMuroSNakanoYCT scan findings of emphysema predict mortality in COPDChest2010138363564020382712
   PubMed Web of Science ®Google Scholar
• MacneeWTuderRMNew paradigms in the pathogenesis of chronic obstructive pulmonary disease IProc Am Thorac Soc20096652753119741262
   PubMedGoogle Scholar
• LøkkeALangePScharlingHFabriciusPVestboJDeveloping COPD: a 25 year follow up study of the general populationThorax2006611193593917071833
   PubMed Web of Science ®Google Scholar
• ChoMHCastaldiPJHershCPA genome-wide association study of emphysema and airway quantitative imaging phenotypesAm J Respir Crit Care Med2015192555956926030696
   PubMed Web of Science ®Google Scholar
• KimWJLeeCYEnvironmental exposures and chronic obstructive pulmonary diseaseMol Cell Toxicol2017133251255
   Web of Science ®Google Scholar
• FanerRCruzTCasserrasTNetwork analysis of lung transcriptomics reveals a distinct B-cell signature in emphysemaAm J Respir Crit Care Med2016193111242125326735770
   PubMed Web of Science ®Google Scholar
• CampbellJDMcdonoughJEZeskindJEA gene expression signature of emphysema-related lung destruction and its reversal by the tripeptide GHKGenome Med2012486722937864
   PubMed Web of Science ®Google Scholar
• MorrowJDZhouXLaoTFunctional interactors of three genome-wide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissueSci Rep201774423228287180
   PubMed Web of Science ®Google Scholar
• MortazaviAWilliamsBAMccueKSchaefferLWoldBMapping and quantifying mammalian transcriptomes by RNA-SeqNat Methods20085762162818516045
   PubMed Web of Science ®Google Scholar
• OzsolakFMilosPMRNA sequencing: advances, challenges and opportunitiesNat Rev Genet2011122879821191423
   PubMed Web of Science ®Google Scholar
• ZhaoSFung-LeungWPBittnerANgoKLiuXComparison of RNA-Seq and microarray in transcriptome profiling of activated T cellsPLoS One201491e7864424454679
   PubMed Web of Science ®Google Scholar
• KimWJLimJHHongYAltered miRNA expression in lung tissues of patients with chronic obstructive pulmonary diseaseMol Cell Toxicol2017132207212
   Web of Science ®Google Scholar
• KimWJLimJHLeeJSLeeSDKimJHOhYMComprehensive analysis of transcriptome sequencing data in the lung tissues of COPD subjectsInt J Genomics2015201520693725834810
   PubMed Web of Science ®Google Scholar
• AdcockIMItoKBarnesPJGlucocorticoids: effects on gene transcriptionProc Am Thorac Soc20041324725416113442
   PubMedGoogle Scholar
• MillerMRHankinsonJBrusascoVStandardisation of spirometryEur Respir J200526231933816055882
   PubMed Web of Science ®Google Scholar
• MakitaHNasuharaYNagaiKCharacterisation of phenotypes based on severity of emphysema in chronic obstructive pulmonary diseaseThorax2007621193293717573447
   PubMed Web of Science ®Google Scholar
• TrapnellCRobertsAGoffLDifferential gene and transcript expression analysis of RNA-seq experiments with TopHat and CufflinksNat Protoc20127356257822383036
   PubMed Web of Science ®Google Scholar
• TrapnellCPachterLSalzbergSLTopHat: discovering splice junctions with RNA-SeqBioinformatics20092591105111119289445
   PubMed Web of Science ®Google Scholar
• TrapnellCWilliamsBAPerteaGTranscript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationNat Biotechnol201028551151520436464
   PubMed Web of Science ®Google Scholar
• CoantNSakamotoWMaoCHannunYACeramidases, roles in sphingolipid metabolism and in health and diseaseAdv Biol Regul20176312213127771292
   PubMedGoogle Scholar
• PetracheINatarajanVZhenLCeramide upregulation causes pulmonary cell apoptosis and emphysema-like disease in miceNat Med200511549149815852018
   PubMed Web of Science ®Google Scholar
• MandalJMallaBSteffensenRMannose-binding lectin protein and its association to clinical outcomes in COPD: a longitudinal studyRespir Res20151615026684757
   PubMed Web of Science ®Google Scholar
• TranHBAhernJHodgeGOxidative stress decreases functional airway mannose binding lectin in COPDPLoS One201496e9857124901869
   PubMed Web of Science ®Google Scholar
• WainLVShrineNArtigasMSGenome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targetsNat Genet201749341642528166213
   PubMed Web of Science ®Google Scholar
• SelivanovaPAKulikovESKozinaOVDifferential expression of the β2-adrenoreceptor and M3-cholinoreceptor genes in bronchial mucosa of patients with asthma and chronic obstructive pulmonary diseaseAnn Allergy Asthma Immunol20121081394322192964
   PubMed Web of Science ®Google Scholar
• PillingDZhengZVakilVGomerRHFibroblasts secrete Slit2 to inhibit fibrocyte differentiation and fibrosisProc Natl Acad Sci U S A201411151182911829625489114
   PubMed Web of Science ®Google Scholar
• ItoKItoMElliottWMDecreased histone deacetylase activity in chronic obstructive pulmonary diseaseN Engl J Med2005352191967197615888697
   PubMed Web of Science ®Google Scholar
• KoenekeEWittOOehmeIHDAC family members intertwined in the regulation of autophagy: a druggable vulnerability in aggressive tumor entitiesCells20154213516825915736
   PubMed Web of Science ®Google Scholar
• LeeJHJeongEGChoiMCInhibition of histone deacetylase 10 induces thioredoxin-interacting protein and causes accumulation of reactive oxygen species in SNU-620 human gastric cancer cellsMol Cells201030210711220680488
   PubMed Web of Science ®Google Scholar
• RevezJAMathesonMCHuiJIdentification of STOML2 as a putative novel asthma risk gene associated with IL6RAllergy20167171020103026932604
   PubMed Web of Science ®Google Scholar
• YokohoriNAoshibaKNagaiARespiratory Failure Research Group in JapanIncreased levels of cell death and proliferation in alveolar wall cells in patients with pulmonary emphysemaChest2004125262663214769747
   PubMed Web of Science ®Google Scholar
• KantrowitzJJKinoseDVasilescuDMTranscriptomic alterations associated with emphysematous lung destruction in centrilobular and panlobular emphysemaAm J Respir Crit Care Med2016193A4075
   Web of Science ®Google Scholar
• PuchelleEZahmJMTournierJMCorauxCAirway epithelial repair, regeneration, and remodeling after injury in chronic obstructive pulmonary diseaseProc Am Thorac Soc20063872673317065381
   PubMedGoogle Scholar
• GosselinkJVHayashiSElliottWMDifferential expression of tissue repair genes in the pathogenesis of chronic obstructive pulmonary diseaseAm J Respir Crit Care Med2010181121329133520075389
   PubMed Web of Science ®Google Scholar
• NingWLiCJKaminskiNComprehensive gene expression profiles reveal pathways related to the pathogenesis of chronic obstructive pulmonary diseaseProc Natl Acad Sci U S A200410141148951490015469929
   PubMed Web of Science ®Google Scholar
• AravamudanBThompsonMAPabelickCMPrakashYSMitochondria in lung diseasesExpert Rev Respir Med20137663164623978003
   PubMed Web of Science ®Google Scholar
• BiałasAJSitarekPMiłkowska-DymanowskaJPiotrowskiWJGórskiPThe role of mitochondria and oxidative/antioxidative imbalance in pathobiology of chronic obstructive pulmonary diseaseOxid Med Cell Longev20162016780857628105251
   PubMed Web of Science ®Google Scholar
• YamadaYTomaruUIshizuADecreased proteasomal function accelerates cigarette smoke-induced pulmonary emphysema in miceLab Invest201595662563425915723
   PubMed Web of Science ®Google Scholar
• CharlesworthJCCurranJEJohnsonMPTranscriptomic epidemiology of smoking: the effect of smoking on gene expression in lymphocytesBMC Med Genomics201032920633249
   PubMed Web of Science ®Google Scholar
• CampPGCoxsonHOLevyRDSex differences in emphysema and airway disease in smokersChest200913661480148819617404
   PubMed Web of Science ®Google Scholar
• GrydelandTBDirksenACoxsonHOQuantitative computed tomography: emphysema and airway wall thickness by sex, age and smokingEur Respir J200934485886519324952
   PubMed Web of Science ®Google Scholar
• HardinMChoMHSharmaSSex-based genetic association study identifies CELSR1 as a possible chronic obstructive pulmonary disease risk locus among womenAm J Respir Cell Mol Biol201756333234127854507
   PubMed Web of Science ®Google Scholar
• CheungAKIpJCChuACPTPRG suppresses tumor growth and invasion via inhibition of Akt signaling in nasopharyngeal carcinomaOncotarget2015615134341344725970784
   PubMedGoogle Scholar
• CheonHBordenECStarkGRInterferons and their stimulated genes in the tumor microenvironmentSemin Oncol201441215617324787290
   PubMed Web of Science ®Google Scholar