143
Views
20
CrossRef citations to date
0
Altmetric
Original Research

Characterization of NDM-5- and CTX-M-55-coproducing Escherichia coli GSH8M-2 isolated from the effluent of a wastewater treatment plant in Tokyo Bay

, , &
Pages 2243-2249 | Published online: 23 Jul 2019

References

  • Logan LK, Weinstein RA. The epidemiology of carbapenem-resistant enterobacteriaceae: the impact and evolution of a global menace. J Infect Dis. 2017;215(suppl_1):S28–S36. doi:10.1093/infdis/jiw28228375512
  • Walsh TR. Emerging carbapenemases: a global perspective. Int J Antimicrob Agents. 2010;36(Suppl 3):S8–S14. doi:10.1016/S0924-8579(10)70004-2
  • Hornsey M, Phee L, Wareham DW. A novel variant, NDM-5, of the New Delhi metallo-beta-lactamase in a multidrug-resistant Escherichia coli ST648 isolate recovered from a patient in the United Kingdom. Antimicrob Agents Chemother. 2011;55(12):5952–5954. doi:10.1128/AAC.05108-1121930874
  • Ali A, Gupta D, Srivastava G, Sharma A, Khan AU. Molecular and computational approaches to understand resistance of New Delhi metallo beta- lactamase variants (NDM-1, NDM-4, NDM-5, NDM-6, NDM-7)-producing strains against carbapenems. J Biomol Struct Dyn. 2019;37(8):2061–2071. doi:10.1080/07391102.2018.1475261
  • Bi R, Kong Z, Qian H, et al. High prevalence of bla NDM variants among carbapenem-resistant Escherichia coli in Northern Jiangsu Province, China. Front Microbiol. 2018;9:2704. doi:10.3389/fmicb.2018.0270430483231
  • Zhang F, Xie L, Wang X, et al. Further spread of bla NDM-5 in Enterobacteriaceae via IncX3 plasmids in Shanghai, China. Front Microbiol. 2016;7:424.27065982
  • Li X, Fu Y, Shen M, et al. Dissemination of blaNDM-5 gene via an IncX3-type plasmid among non-clonal Escherichia coli in China. Antimicrob Resist Infect Control. 2018;7:59. doi:10.1186/s13756-018-0349-629713466
  • Sekizuka T, Yatsu K, Inamine Y, et al. Complete genome sequence of a blaKPC-2-positive Klebsiella pneumoniae strain isolated from the effluent of an Urban Sewage Treatment Plant in Japan. mSphere. 2018;3:5. doi:10.1128/mSphere.00314-18
  • Nordmann P, Poirel L, Dortet L. Rapid detection of carbapenemase-producing Enterobacteriaceae. Emerg Infect Dis. 2012;18(9):1503–1507. doi:10.3201/eid1809.12035522932472
  • Sekizuka T, Matsui M, Takahashi T, et al. Complete genome sequence of bla IMP-6-positive Metakosakonia sp. MRY16-398 isolate from the ascites of a diverticulitis patient. Front Microbiol. 2018;9:2853. doi:10.3389/fmicb.2018.0285330524415
  • Tanizawa Y, Fujisawa T, Nakamura Y. DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication. Bioinformatics. 2018;34(6):1037–1039. doi:10.1093/bioinformatics/btx71329106469
  • Petkau A, Stuart-Edwards M, Stothard P, Van Domselaar G. Interactive microbial genome visualization with GView. Bioinformatics. 2010;26(24):3125–3126. doi:10.1093/bioinformatics/btq58820956244
  • Zankari E, Hasman H, Cosentino S, et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother. 2012;67(11):2640–2644. doi:10.1093/jac/dks26122782487
  • Carattoli A, Zankari E, Garcia-Fernandez A, et al. In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing. Antimicrob Agents Chemother. 2014;58(7):3895–3903. doi:10.1128/AAC.02412-1424777092
  • Yamashita A, Sekizuka T, Kuroda M. Characterization of antimicrobial resistance dissemination across plasmid communities classified by network analysis. Pathogens. 2014;3(2):356–376. doi:10.3390/pathogens302035625437804
  • Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26(19):2460–2461. doi:10.1093/bioinformatics/btq46120709691
  • Shannon P, Markiel A, Ozier O, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13(11):2498–2504. doi:10.1101/gr.123930314597658
  • Krishnaraju M, Kamatchi C, Jha AK, et al. Complete sequencing of an IncX3 plasmid carrying blaNDM-5 allele reveals an early stage in the dissemination of the blaNDM gene. Indian J Med Microbiol. 2015;33(1):30–38. doi:10.4103/0255-0857.14837325559999
  • Feng J, Qiu Y, Yin Z, et al. Coexistence of a novel KPC-2-encoding MDR plasmid and an NDM-1-encoding pNDM-HN380-like plasmid in a clinical isolate of Citrobacter freundii. J Antimicrob Chemother. 2015;70(11):2987–2991. doi:10.1093/jac/dkv23226260129
  • Nakano R, Nakano A, Hikosaka K, et al. First report of metallo-beta-lactamase NDM-5-producing Escherichia coli in Japan. Antimicrob Agents Chemother. 2014;58(12):7611–7612. doi:10.1128/AAC.04265-1425246390
  • Almakki A, Maure A, Pantel A, et al. NDM-5-producing Escherichia coli in an urban river in Montpellier, France. Int J Antimicrob Agents. 2017;50(1):123–124. doi:10.1016/j.ijantimicag.2017.04.00328435018
  • Parvez S, Khan AU. Hospital sewage water: a reservoir for variants of New Delhi metallo-beta-lactamase (NDM)- and extended-spectrum beta-lactamase (ESBL)-producing Enterobacteriaceae. Int J Antimicrob Agents. 2018;51(1):82–88. doi:10.1016/j.ijantimicag.2017.08.03228887202
  • Gomi R, Matsuda T, Yamamoto M, et al. Characteristics of carbapenemase-producing enterobacteriaceae in wastewater revealed by genomic analysis. Antimicrob Agents Chemother. 2018;62:5. doi:10.1128/AAC.02501-17
  • Zurfluh K, Stevens MJA, Stephan R, Nuesch-Inderbinen M. Complete and assembled genome sequence of an NDM-5- and CTX-M-15-producing Escherichia coli sequence type 617 isolated from wastewater in Switzerland. J Glob Antimicrob Resist. 2018;15:105–106. doi:10.1016/j.jgar.2018.08.01530149195
  • Kiratisin P, Apisarnthanarak A, Saifon P, Laesripa C, Kitphati R, Mundy LM. The emergence of a novel ceftazidime-resistant CTX-M extended-spectrum beta-lactamase, CTX-M-55, in both community-onset and hospital-acquired infections in Thailand. Diagn Microbiol Infect Dis. 2007;58(3):349–355. doi:10.1016/j.diagmicrobio.2007.02.00517449211
  • Hu X, Gou J, Guo X, et al. Genetic contexts related to the diffusion of plasmid-mediated CTX-M-55 extended-spectrum beta-lactamase isolated from Enterobacteriaceae in China. Ann Clin Microbiol Antimicrob. 2018;17(1):12. doi:10.1186/s12941-018-0265-x29571292
  • Wang YH, Li XN, Chen C, Zhang J, Wang GQ. Detection of floR gene and active efflux mechanism of Escherichia coli in Ningxia, China. Microb Pathog. 2018;117:310–314. doi:10.1016/j.micpath.2018.02.04229481973
  • Lu J, Zhang J, Xu L, et al. Spread of the florfenicol resistance floR gene among clinical Klebsiella pneumoniae isolates in China. Antimicrob Resist Infect Control. 2018;7:127. doi:10.1186/s13756-018-0415-030410748