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Original Research

Serotype Distribution of Streptococcus pneumoniae Isolates Causing Invasive and Non-Invasive Infections Using Whole-Genome Sequencing in Ethiopia

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Pages 787-794 | Published online: 02 Mar 2021

References

  • Pokrovskiy VI, Tvorogova MG, Shipulin GA, eds. Molecular Diagnostics of Infectious Diseases. Moscow: RIPOL klassic; 2018.
  • van Tonder AJ, Bray JE, Quirk SJ, et al. Putatively novel serotypes and the potential for reduced vaccine effectiveness: capsular locus diversity revealed among 5405 pneumococcal genomes. Microb Genom. 2016;2(10). doi:10.1099/mgen.0.000090
  • Jauneikaite E, Tocheva AS, Jefferies JMC, et al. Current methods for capsular typing of Streptococcus pneumoniae. J Microbiol Methods. 2015;113:41–49. doi:10.1016/j.mimet.2015.03.00625819558
  • Sørensen UB. Typing of pneumococci by using 12 pooled antisera. J Clin Microbiol. 1993;31(8):2097–2100. doi:10.1128/JCM.31.8.2097-2100.19938370735
  • Bentley SD, Aanensen DM, Mavroidi A, et al. Genetic analysis of the capsular biosynthetic locus from all 90 Pneumococcal serotypes. PLoS Genet. 2006;2(3):e31. doi:10.1371/journal.pgen.002003116532061
  • Epping L, van Tonder AJ, Gladstone RA, Bentley SD, Page AJ, Keane JA; The Global Pneumococcal Sequencing Consortium. SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data. Microb Genom. 2018;4. doi:10.1099/mgen.0.000186.
  • Everett DB, Cornick J, Denis B, et al. Genetic characterization of malawian Pneumococci prior to the roll-out of the PCV13 vaccine using a high-throughput whole genome sequencing approach. PLoS One. 2012;7(9):e44250. doi:10.1371/journal.pone.004425022970189
  • Mironov KO, Korchagin VI, Mihailova YV, et al. Characterization of Streptococcus Pneumoniae strains causing invasive infections using whole-genome sequencing. J Microbiol Epidemiol Immunobiol. 2020;97(2):113–118. doi:10.36233/0372-9311-2020-97-2-113-118
  • Kapatai G, Sheppard CL, Al-Shahib A, et al. Whole genome sequencing of Streptococcus pneumoniae: development, evaluation and verification of targets for serogroup and serotype prediction using an automated pipeline. PeerJ. 2016;4:e2477. doi:10.7717/peerj.247727672516
  • Gladstone RA, Jefferies JM, Tocheva AS, et al. Five winters of pneumococcal serotype replacement in UK carriage following PCV introduction. Vaccine. 2015;33(17):2015–2021. doi:10.1016/j.vaccine.2015.03.01225776920
  • Metcalf BJ, Gertz RE Jr, Gladstone RA, et al.; Active Core Surveillance Team. Strain features and distributions in pneumococci from children with invasive disease before and after 13-valent conjugate vaccine implementation in the USA. Clin Microbiol Infect. 2016;22(1):60e9–60e29. doi:10.1016/j.cmi.2015.08.027
  • Weinberger DM, Malley R, Lipsitch M. Serotype replacement in disease following pneumococcal vaccination: a discussion of the evidence. Lancet. 2011;378(9807):1962–1973. doi:10.1016/S0140-6736(10)62225-821492929
  • Makarewicz O, Lucas M, Brandt C, et al. Whole genome sequencing of 39 invasive Streptococcus pneumoniae sequence Type 199 isolates revealed switches from serotype 19A to 15B. PLoS One. 2017;12(1):e0169370. doi:10.1371/journal.pone.016937028046133
  • Makwana A, Ladhani SN, Kapatai G, Campion E, Fry NK, Sheppard C. Rapid spread of pneumococcal nonvaccine serotype 7c previously associated with vaccine serotype 19F, England and Wales. Emerg Infect Dis. 2018;24(10):1919–1922. doi:10.3201/eid2410.18011430226184
  • Hackel M, Lascols C, Bouchillon S, Hilton B, Morgenstern D, Purdy J. Serotype prevalence and antibiotic resistance in Streptococcus pneumoniae clinical isolates among global populations. Vaccine. 2013;314881–314887.
  • Johnson HL, Deloria-Knoll M, Levine OS, et al. Systematic evaluation of serotypes causing invasive pneumococcal disease among children under five: the pneumococcal global serotype project. PLoS Med. 2010;7(10):e1000348. doi:10.1371/journal.pmed.100034820957191
  • Pneumococcal conjugate vaccine for childhood immunization-WHO position paper. Wkly Epidemiol Rec. 2007;82(12):93–104.17380597
  • Ministry of Health Federal Republic of Ethiopia. Introducing pneumococcal conjugate vaccine in Ethiopia: training manual for health workers. Addis Ababa, Ethiopia; 2011.
  • WHO and UNICEF estimates of immunization coverage: 2019 revision, Ethiopia
  • Muhe L, Klugman KP. Pneumococcal and Haemophilus influenzae meningitis in a children’s hospital in Ethiopia: serotypes and susceptibility patterns. Trop Med Int Health. 1999;4(6):421–427. doi:10.1046/j.1365-3156.1999.00417.x10444317
  • Tegene B, Denekew K, Mesele G. Phenotypic Characterization and Serotypes Identification of CSF isolates in acute bacterial meningitis. Am J Infect Dis. 2017;5(3):100–105. doi:10.12691/ajidm-5-3-1
  • Chang B, Morita M, Lee K-I, Ohnishi M. Whole-genome sequence analysis of streptococcus pneumoniae strains that cause hospital-acquired pneumonia infections. J Clin Microbiol. 2018;56(5):e01822–17. doi:10.1128/JCM.01822-1729444837
  • Zhao W, Pan F, Wang B, et al. Epidemiology characteristics of Streptococcus pneumoniae from children with pneumonia in Shanghai: a retrospective study. Front Cell Infect Microbiol. 2019;9:258. doi:10.3389/fcimb.2019.0025831380301
  • Cornick JE, Chaguza C, Harris SR, et al.; for the PAGe Consortium. Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae. Microb Genom. 2015;1–13. doi:10.1099/mgen.0.000027
  • Morales M, Ludwig G, Ercibengoa M, et al. Changes in the serotype distribution of Streptococcus pneumoniae causing otitis media after PCV13 introduction in Spain. PLoS One. 2018;13(12):e0209048. doi:10.1371/journal.pone.020904830562385
  • Coffey TJ, Enright MC, Daniels M, et al. Recombinational exchanges at the capsular polysaccharide biosynthetic locus lead to frequent serotype changes among natural isolates of Streptococcus pneumoniae. Mol Microbiol. 1998;27(1):73–83. doi:10.1046/j.1365-2958.1998.00658.x9466257