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ORIGINAL RESEARCH

Comprehensive Surveillance and Sampling Reveal Carbapenem-Resistant Organism Spreading in Tertiary Hospitals in China

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Pages 4563-4573 | Published online: 17 Aug 2022

References

  • Chen M, Conlan S, Lau AF, et al.;Program NCS. Whole-genome sequencing overrules a suspected case of carbapenem-resistant Enterobacter cloacae transmission. J Clin Microbiol. 2017;55(9):2868–2870. doi:10.1128/JCM.00915-17
  • Mork RL, Hogan PG, Muenks CE, et al. Longitudinal, strain-specific Staphylococcus aureus introduction and transmission events in households of children with community-associated meticillin-resistant S aureus skin and soft tissue infection: a prospective cohort study. Lancet Infect Dis. 2020;20(2):188–198. doi:10.1016/S1473-3099(19)30570-5
  • Gorrie CL, Mirceta M, Wick RR, et al. Antimicrobial-resistant Klebsiella pneumoniae carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital. Clin Infect Dis. 2018;67(2):161–170. doi:10.1093/cid/ciy027
  • Shenoy ES, Pierce VM, Walters MS, et al. Transmission of Mobile Colistin Resistance (mcr-1) by Duodenoscope. Clin Infect Dis. 2019;68(8):1327–1334. doi:10.1093/cid/ciy683
  • Weingarten RA, Johnson RC, Conlan S, et al. Genomic analysis of hospital plumbing reveals diverse reservoir of bacterial plasmids conferring carbapenem resistance. mBio. 2018;9(1). doi:10.1128/mBio.02011-17
  • Popovich KJ, Green SJ, Okamoto K, et al. MRSA transmission in intensive care units: genomic analysis of patients, their environments, and healthcare workers. Clin Infect Dis. 2021;72(11):1879–1887. doi:10.1093/cid/ciaa731
  • Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9(4):357–359. doi:10.1038/nmeth.1923
  • Li H, Handsaker B, Wysoker A, et al. The sequence alignment/map format and SAMtools. Bioinformatics. 2009;25(16):2078–2079. doi:10.1093/bioinformatics/btp352
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K, Battistuzzi FU. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547–1549. doi:10.1093/molbev/msy096
  • Brondani Moreira RR, Viana GF, de Moraes ACC, et al. Dissemination of Acinetobacter baumannii OXA-23 in old and new intensive care units without transfer of colonized patients. Infect Control Hosp Epidemiol. 2018;39(9):1135–1137. doi:10.1017/ice.2018.168
  • Wei L, Wu L, Wen H, et al. Spread of carbapenem-resistant Klebsiella pneumoniae in an intensive care unit: a whole-genome sequence-based prospective observational study. Microbiol Spectr;2021. e0005821. doi:10.1128/Spectrum.00058-21
  • Qiao F, Wei L, Feng Y, et al. Handwashing sink contamination and carbapenem-resistant Klebsiella infection in the intensive care unit: a prospective multicenter study. Clin Infect Dis. 2020;71(Suppl 4):S379–S85. doi:10.1093/cid/ciaa1515
  • Gorrie CL, Mirceta M, Wick RR, et al. Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients. Clin Infect Dis. 2017;65(2):208–215. doi:10.1093/cid/cix270
  • Khader K, Thomas A, Huskins WC, et al. Effectiveness of contact precautions to prevent transmission of methicillin-resistant staphylococcus aureus and vancomycin-resistant enterococci in intensive care units. Clin Infect Dis. 2021;72(Suppl 1):S42–S9. doi:10.1093/cid/ciaa1603
  • Schwaber MJ, Lev B, Israeli A, et al. Containment of a country-wide outbreak of carbapenem-resistant Klebsiella pneumoniae in Israeli hospitals via a nationally implemented intervention. Clin Infect Dis. 2011;52(7):848–855. doi:10.1093/cid/cir025
  • Ben-David D, Masarwa S, Fallach N, et al. Success of a national intervention in controlling carbapenem-resistant Enterobacteriaceae in Israel’s long-term care facilities. Clin Infect Dis. 2019;68(6):964–971. doi:10.1093/cid/ciy572
  • Gouliouris T, Coll F, Ludden C, et al. Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance. Nat Microbiol. 2021;6(1):103–111. doi:10.1038/s41564-020-00806-7
  • Espedido BA, Dimitrijovski B, van Hal SJ, Jensen SO. The use of whole-genome sequencing for molecular epidemiology and antimicrobial surveillance: identifying the role of IncX3 plasmids and the spread of blaNDM-4-like genes in the Enterobacteriaceae. J Clin Pathol. 2015;68(10):835–838. doi:10.1136/jclinpath-2015-203044
  • Onori R, Gaiarsa S, Comandatore F, et al. Tracking nosocomial Klebsiella pneumoniae infections and outbreaks by whole-genome analysis: small-scale Italian scenario within a Single Hospital. J Clin Microbiol. 2015;53(9):2861–2868. doi:10.1128/JCM.00545-15
  • Lesho EP, Bronstein MZ, McGann P, et al. Importation, mitigation, and genomic epidemiology of candida auris at a large teaching hospital. Infect Control Hosp Epidemiol. 2018;39(1):53–57. doi:10.1017/ice.2017.231
  • Russo TA, Marr CM. Hypervirulent Klebsiella pneumoniae. Clin Microbiol Rev. 2019;32(3). doi:10.1128/CMR.00001-19
  • Turton JF, Payne Z, Coward A, et al. Virulence genes in isolates of Klebsiella pneumoniae from the UK during 2016, including among carbapenemase gene-positive hypervirulent K1-ST23 and ‘non-hypervirulent’ types ST147, ST15 and ST383. J Med Microbiol. 2018;67(1):118–128. doi:10.1099/jmm.0.000653
  • Heiden SE, Hubner NO, Bohnert JA, et al. A Klebsiella pneumoniae ST307 outbreak clone from Germany demonstrates features of extensive drug resistance, hypermucoviscosity, and enhanced iron acquisition. Genome Med. 2020;12(1):113. doi:10.1186/s13073-020-00814-6
  • Gu D, Dong N, Zheng Z, et al. A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study. Lancet Infect Dis. 2018;18(1):37–46. doi:10.1016/S1473-3099(17)30489-9