Filter-Membrane-Based Ultrafiltration Coupled with Surface-Enhanced Raman Spectroscopy for Potential Differentiation of Benign and Malignant Thyroid Tumors from Blood Plasma

References

• Dittrich R, Beckmann MW, Oppelt PG, et al. Thyroid hormone receptors and reproduction. J Reprod Immunol. 2011;90(1):58–66. doi:10.1016/j.jri.2011.02.00921641659
   PubMed Web of Science ®Google Scholar
• Tasneem A. The incidence of hyperprolactinaemia and associated hypothyroidism- local experience from Lahore Centre for Nuclear Medicine. Mayo Hospital Lahore, Government College for Boys Gulberg Lahore. PJNM. 2011;1:49–55.
   Google Scholar
• Bray F, Ferlay J, Soerjomataram I, et al. Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. 2018;68(6):394–424. doi:10.3322/caac.21492.30207593
   PubMed Web of Science ®Google Scholar
• Davies L, Welch HG. Current thyroid cancer trends in the United States. JAMA Otolaryngol Head Neck Surg. 2014;140(4):317–322. doi:10.1001/jamaoto.2014.124557566
   PubMed Web of Science ®Google Scholar
• LG T. Diagnostic ultrasound in clinical thyroid investigation. J Clin Endocrinol Metab. 1971;36:709716.
   Google Scholar
• Gharib H, Papini E. Thyroid nodules: clinical importance, assessment, and treatment. Endocrinol Metab Clin North Am. 2007;36(3):707–735. doi:10.1016/j.ecl.2007.04.00917673125
   PubMed Web of Science ®Google Scholar
• Castro MR, Hossein Gharib MD. Thyroid fine-needle aspiration biopsy-progress, practice, and Pitfalls. AACE. 2003;9(2):128–136.
   Google Scholar
• Kolanjiappan K, Ramachandran CR, Manoharan S. Biochemical changes in tumor tissues of oral cancer patients. Clin Biochem. 2003;36(1):61–65. doi:10.1016/S0009-9120(02)00421-612554062
   PubMed Web of Science ®Google Scholar
• Sarandakou A, Protonotariou E, Rizos D. Tumor markers in biological fluids associated with pregnancy. Crit Rev Clin Lab Sci. 2007;44(2):151–178. doi:10.1080/1040836060100314317364691
   PubMed Web of Science ®Google Scholar
• Wachsmann-Hogiu S, Weeks T, Huser T. Chemical analysis in vivo and in vitro by Raman spectroscopy–from single cells to humans. Curr Opin Biotechnol. 2009;20(1):63–73. doi:10.1016/j.copbio.2009.02.00619268566
   PubMed Web of Science ®Google Scholar
• Botti S, Almaviva S, Cantarini L, et al. Trace level detection and identification of nitro-based explosives by surface-enhanced Raman spectroscopy. J Raman Spectrosc. 2013;44(3):463–468. doi:10.1002/jrs.4203
   Web of Science ®Google Scholar
• Hunter R, Sohi AN, Khatoon Z, et al. Optofluidic label-free SERS platform for rapid bacteria detection in serum. Sens Actuat B Chem. 2019;300:126907. doi:10.1016/j.snb.2019.126907
   Web of Science ®Google Scholar
• Joseph MM, Narayanan N, Nair JB. Exploring the margins of SERS in practical domain- An emerging diagnostic modality for modern biomedical applications. Biomaterials. 2018;181:140–181. doi:10.1016/j.biomaterials.2018.07.04530081304
   PubMed Web of Science ®Google Scholar
• Zheng X-S, Jahn IJ, Weber K, et al. Label-free SERS in biological and biomedical applications: recent progress, current challenges and opportunities. Spectrochim Acta Part A Mol Biomol Spectrosc. 2018;197:56–77. doi:10.1016/j.saa.2018.01.063
   PubMed Web of Science ®Google Scholar
• McAughtrie S, Faulds K, Graham D. Surface enhanced Raman spectroscopy (SERS): potential applications for disease detection and treatment. J Photochem Photobiol C Photochem Rev. 2014;21:40–53. doi:10.1016/j.jphotochemrev.2014.09.002
   Web of Science ®Google Scholar
• Zuanfang L, Chao L, Li C, Lin D, et al. Surface-enhanced Raman spectroscopy for differentiation between benign and malignant thyroid tissues. Laser Phys Lett. 2014;11:045602.
   Web of Science ®Google Scholar
• Leopold N, Lendl B. A new method for fast preparation of highly surface-enhanced Raman scattering (SERS) active silver colloids at room temperature by reduction of silver nitrate with hydroxylamine hydrochloride. J Phys Chem b. 2003;107(24):5723–5727. doi:10.1021/jp027460u
   Web of Science ®Google Scholar
• Wisniewski JR, Zougman A, Nagaraj N, et al. Universal sample preparation method for proteome analysis. Nat Methods. 2009;6(5):359–362. doi:10.1038/nmeth.132219377485
   PubMed Web of Science ®Google Scholar
• Bonnier F, Baker MJ, Byrne HJ. Vibrational spectroscopic analysis of body fluids: avoiding molecular contamination using centrifugal filtration. Anal Methods. 2014;6(14):5155. doi:10.1039/c4ay00891j
   Web of Science ®Google Scholar
• Svante Wold KE, Geladi P. Principal component analysis. Chemom Intell Lab Syst. 1987;2(13):37–52. doi:10.1016/0169-7439(87)80084-9
   Google Scholar
• Feng S, Chen R, Lin J, et al. Nasopharyngeal cancer detection based on blood plasma surface-enhanced Raman spectroscopy and multivariate analysis. Biosens Bioelectron. 2010;25(11):2414–2419. doi:10.1016/j.bios.2010.03.03320427174
   PubMed Web of Science ®Google Scholar
• Kukreja SL, Löfberg J, Brenner MJ. A least absolute shrinkage and selection operator (LASSO) for nonlinear system identification. Elsevier. 2006;39(1):814–819.
   Google Scholar
• Chen G, Lin X, Lin D, et al. Identification of different tumor states in nasopharyngeal cancer using surface-enhanced Raman spectroscopy combined with Lasso-PLS-DA algorithm. RSC Adv. 2016;6(10):7760–7764. doi:10.1039/C5RA24438B
   Web of Science ®Google Scholar
• Shi Y, Liu W, Chen C. Two-step centrifugation method for subpicomolar surface-enhanced raman scattering detection. Anal Chem. 2016;88(9):5009–5015. doi:10.1021/acs.analchem.6b0119427064074
   PubMed Web of Science ®Google Scholar
• Synytsya A, Judexova M, Hoskovec D, et al. Raman spectroscopy at different excitation wavelengths (1064, 785 and 532 nm) as a tool for diagnosis of colon cancer. J Raman Spectrosc. 2014;45(10):903–911. doi:10.1002/jrs.4581
   Web of Science ®Google Scholar
• Wang X, Li Y, Wang H, et al. Gold nanorod-based localized surface plasmon resonance biosensor for sensitive detection of hepatitis B virus in buffer, blood serum and blood plasma. Biosens Bioelectron. 2010;26(2):404–410. doi:10.1016/j.bios.2010.07.12120729056
   PubMed Web of Science ®Google Scholar
• Rohleder D, Kiefer W, Petrich W. Quantitative analysis of serum and serum ultrafiltrate by means of Raman spectroscopy. Analyst. 2004;129(10):906–911. doi:10.1039/b408927h15457321
   PubMed Web of Science ®Google Scholar
• Li M, Kang JW, Dasari RR, et al. Shedding light on the extinction-enhancement duality in gold nanostar-enhanced Raman spectroscopy. Angew Chem Int Ed Engl. 2014;53(51):14115–14119. doi:10.1002/anie.v53.5125331156
   PubMed Web of Science ®Google Scholar
• Harper RG, Workman SR, Schuetzner S, et al. Low-molecular-weight human serum proteome using ultrafiltration, isoelectric focusing, and mass spectrometry. Electrophoresis. 2004;25(9):1299–1306. doi:10.1002/(ISSN)1522-268315174052
   PubMed Web of Science ®Google Scholar
• Harris AT, Garg M, Yang XB, et al. Raman spectroscopy and advanced mathematical modelling in the discrimination of human thyroid cell lines. Head Neck Oncol. 2009;1(1):38. doi:10.1186/1758-3284-1-3819863815
   PubMedGoogle Scholar
• Spedding FH, Stamm RF. The raman spectra of the sugars in the solid state and in solution I. The raman spectra of α‐ and β‐d‐glucose. J Chem Phys. 1942;10(3):176–183. doi:10.1063/1.1723681
   Google Scholar
• Mosier-Boss PA, Lieberman SH. Detection of volatile organic compounds using surface enhanced Raman spectroscopy substrates mounted on a thermoelectric cooler. Anal Chim Acta. 2003;488(1):15–23. doi:10.1016/S0003-2670(03)00676-7
   Web of Science ®Google Scholar
• Tenenbaum JB, de Silva V, Langford JC. A global geometric framework for nonlinear dimensionality reduction. Science. 2000;290(5500):2319–2323. doi:10.1126/science.290.5500.231911125149
   PubMed Web of Science ®Google Scholar
• Li MX, Yeung JMY, Cherny SS, et al. Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets. Hum Genet. 2012;131(5):747–756. doi:10.1007/s00439-011-1118-222143225
   PubMed Web of Science ®Google Scholar
• Guo Y, Hastie T, Tibshirani R. Regularized linear discriminant analysis and its application in microarrays. Biostatistics. 2007;8(1):86–100. doi:10.1093/biostatistics/kxj03516603682
   PubMed Web of Science ®Google Scholar
• Westerhuis JA, Hoefsloot HCJ, Smit S, et al. Assessment of PLSDA cross validation. Metabolomics. 2008;4(1):81–89. doi:10.1007/s11306-007-0099-6
   Web of Science ®Google Scholar
• Pencina MJ, D’ Agostino RB, D’ Agostino RB, et al. Evaluating the added predictive ability of a new marker: from area under the ROC curve to reclassification and beyond. Stat Med. 2008;27(2):157–172. discussion 20712. doi:10.1002/(ISSN)1097-0258.17569110
   PubMed Web of Science ®Google Scholar
• Larouche N, Stansfield BL. Classifying nanostructured carbons using graphitic indices derived from Raman spectra. Carbon. 2010;48(3):620–629. doi:10.1016/j.carbon.2009.10.002
   Web of Science ®Google Scholar
• Notingher I, Jell G, Notingher PL, et al. Multivariate analysis of Raman spectra for in vitro non-invasive studies of living cells. J Mol Struct. 2005;744747:179–185. doi:10.1016/j.molstruc.2004.12.046
   Google Scholar
• Tan SC, Khor E. The degree of deacetylation of chitosan- advocating the first derivative UV-spectrophotometry method of determination. Talanta. 1998;45(4):713–719. doi:10.1016/S0039-9140(97)00288-918967053
   PubMed Web of Science ®Google Scholar
• Cawley GC, Talbot NL. Fast exact leave-one-out cross-validation of sparse least-squares support vector machines. Neural Networks. 2004;17(10):1. doi:10.1016/j.neunet.2004.07.002
   Web of Science ®Google Scholar