9
Views
0
CrossRef citations to date
0
Altmetric
Original Research

Influence of SMAD1 gene in osteoporosis: A bioinformatics approach

&
Pages 79-87 | Published online: 22 Jul 2010

References

  • Cline RR, Farley JF, Hansen RA, et al. Osteoporosis beliefs and anti- resorptive medication use. Maturitas. 2005;50(3):196–208.
  • Baylink DJ, Strong DD, Mohan S. The diagnosis and treatment of osteoporosis: future prospects. Molecular Medicine Today. 1999;5(3):133–140.
  • Reginster JY, Burlet N. Osteoporosis: A still increasing prevalence. Bone. 2006;38(2 Suppl 1):S4-S9.
  • Ferrari S. Human genetics of osteoporosis. Best Practice and Research Clinical Endocrinology & Metabolism. 2008;22(5):723–735.
  • Liu YJ, Shen H, Xiao P, et al. Molecular genetic studies of gene identification for osteoporosis: a 2004 update. Journal of Bone and Mineral Research. 2006;21(10):1511–1535.
  • Bajdik CD, Kuo B, Rusaw S, et al. CGMIM: automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes. BMC Bioinformatics. 2005;78(6):1–7.
  • Gajendran VK, Lin JR, Fyhrie DP. An application of bioinformatics and text mining to the discovery of novel genes related to bone biology. Bone. 2007;40(5):1378–1388.
  • Mah JTL, Chia KS. A gentle introduction to SNP analysis: resources and tools. JBioinfo Comp Biol. 2007;5(5):1123–1138.
  • Ross S, Hill CS. How the Smads regulate transcription. The Int J of Biochem. Cell Biol. 2008;40(3):383–408.
  • Sherry ST, Ward MH, Kholodov M, et al. dbSNP: The NCBI database of genetic variation. Nucleic Acids Res. 2001;29(1):308–311.
  • Ng CP, Henikoff S. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res. 2003;31(13):3812–3814.
  • Ng CP, Henikoff S. Predicting deleterious amino acid substitutions. Genome Res. 2001;11:863–874.
  • Shen J, Deininger PL, Zhao H. Applications of computational algorithm tools to identify functional SNPs in cytokine genes. Cytokine. 2006;35(1–2):62–66.
  • Ramensky V Bork P, Sunyaev S. Human non-synonymous SNPs: Server and survey. Nucleic Acids Res. 2002;30(17):3894–3900.
  • Sunyaev S, Ramensky V, Koch I, et al. Prediction of deleterious human alleles. Hum Mol Genet. 2001;10(6):591–597.
  • Sunyaev S, Ramensky V, Bork P. Towards a structural basis of human non-synonymous single nucleotide polymorphisms. Trends Genet. 2000;16(5):198–200.
  • Yuan HY, Chiou JJ, Tseng WH, et al. FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization. Nucleic Acids Res. 2006;34(Web Server):W635-W641.
  • Benson DA, Karsch-Mizrachi I, Lipman DJ, et al. GenBank: update. Nucleic Acids Res. 2004;32(Database):D23-D26.
  • Boeckmann B, Bairoch A, Apweiler R, et al. The Swiss-Prot protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 2003;31(1):365–370.
  • Hubbard TJP, Aken BL, Ayling S, et al. Ensembl 2009. Nucleic Acids Res. 2009;37(Database):D690-D697.
  • Flicek P, Aken BL, Beal K, et al. Ensembl 2008. Nucleic Acids Res. 2008;36(Database):D707-D714.
  • Hubbard T, Barker D, Birney E, et al. The Ensembl genome database project. Nucleic Acids Research. 2002;30(1):38–41.
  • Arnold K, Bordoli L, Kopp J, et al. The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling. Bioinformatics. 2006;22(2):195–201.
  • Kopp J, Schwede T. The SWISS-MODEL Repository of annotated threedimensional protein structure homology models. Nucleic Acids Res. 2004;32(Database):D230-D234.
  • Schwede T, Kopp J, Guex N, et al. SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res. 2003;31(13):3381–3385.
  • Guex N, Peitsch MC. SWISS-MODEL and the Swiss-Pdb Viewer: An environment for comparative protein modeling. Electrophoresis. 1997;18(15):2714–2723.
  • van Deventer SJH. Cytokine and cytokine receptor polymorphisms in infectious disease. Intensive Care Med. 2000;26(13):S98-S102.