DNA Methylation Level of Transcription Factor Binding Site in the Promoter Region of Acyl-CoA Synthetase Family Member 3 (ACSF3) in Saudi Autistic Children

References

• Dickerson AS, Pearson DA, Loveland KA, Rahbar MH, Filipek PA. Role of parental occupation in autism spectrum disorder diagnosis and severity. Res Autism Spectr Disord. 2014;8(9):997–1007. doi:10.1016/j.rasd.2014.05.007
   PubMed Web of Science ®Google Scholar
• Sharma SR, Gonda X, Tarazi FI. Autism spectrum disorder: classification, diagnosis and therapy. Pharmacol Ther. 2018;190:91–104. doi:10.1016/j.pharmthera.2018.05.007
   PubMed Web of Science ®Google Scholar
• Elsabbagh M, Divan G, Koh YJ, et al. Global prevalence of autism and other pervasive developmental disorders. Autism Res. 2012;5(3):160–179. doi:10.1002/aur.239
   PubMed Web of Science ®Google Scholar
• Weiss LA, Arking DE. A genome-wide linkage and association scan reveals novel loci for autism. Nature. 2009;461(7265):802–808. doi:10.1038/nature08490
   PubMed Web of Science ®Google Scholar
• Chaste P, Leboyer M. Autism risk factors: genes, environment, and gene-environment interactions. Dialogues Clin Neurosci. 2012;14(3):281.
   PubMedGoogle Scholar
• Qiu S, Li Y, Li Y, et al. Association between SHANK3 polymorphisms and susceptibility to autism spectrum disorder. Gene. 2018;651:100–105. doi:10.1016/j.gene.2018.01.078
   PubMed Web of Science ®Google Scholar
• Alnemary FM, Aldhalaan HM, Simon-Cereijido G, Alnemary FM. Services for children with autism in the Kingdom of Saudi Arabia. Autism. 2017;21(5):592–602. doi:10.1177/1362361316664868
   PubMed Web of Science ®Google Scholar
• Liu ML, Su W, Wang JS, Yang YH, Yang H, Lin H. Predicting preference of transcription factors for methylated DNA using sequence information. Mol Ther Nucleic Acids. 2020;22:1043–1050. doi:10.1016/j.omtn.2020.07.035
   PubMedGoogle Scholar
• Ziller MJ, Gu H, Müller F, et al. Charting a dynamic DNA methylation landscape of the human genome. Nature. 2013;500(7463):477–481. doi:10.1038/nature12433
   PubMed Web of Science ®Google Scholar
• Hu S, Wan J, Su Y, et al. DNA methylation presents distinct binding sites for human transcription factors. elife. 2013;2:e00726. doi:10.7554/eLife.00726
   PubMed Web of Science ®Google Scholar
• Yin Y, Morgunova E, Jolma A, et al. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science. 2017;356(6337). doi:10.1126/science.aaj2239.
   Web of Science ®Google Scholar
• Hamilton JP. Epigenetics: principles and practice. Dig Dis. 2011;29(2):130–135. doi:10.1159/000323874
   PubMed Web of Science ®Google Scholar
• Jin B, Li Y, Robertson KD. DNA methylation: superior or subordinate in the epigenetic hierarchy? Genes Cancer. 2011;2(6):607–617. doi:10.1177/1947601910393957
   PubMedGoogle Scholar
• Tremblay MW, Jiang Y-H. DNA methylation and susceptibility to autism spectrum disorder. Annu Rev Med. 2019;70(1):151–166. doi:10.1146/annurev-med-120417-091431
   PubMed Web of Science ®Google Scholar
• Ghazanfari T, Tehrani GA, Maziri P. The relationship between the methylation of promoter regions of tumor suppressor genes PTEN and APC with endometrial cancer. Asian Pac J Cancer Prev. 2019;20(8):2259. doi:10.31557/APJCP.2019.20.8.2259
   PubMedGoogle Scholar
• Hu Z, Ying X, Huang L, et al. Association of human serotonin receptor 4 promoter methylation with autism spectrum disorder. Medicine. 2020;99(4):e18838.
   PubMed Web of Science ®Google Scholar
• Bundo M, Ueda J, Nakachi Y, Kasai K, Kato T, Iwamoto K. Decreased DNA methylation at promoters and gene-specific neuronal hypermethylation in the prefrontal cortex of patients with bipolar disorder. Mol Psychiatry. 2021;26:3407–3418.
   PubMed Web of Science ®Google Scholar
• Aref-Eshghi E, Kerkhof J, Pedro VP, et al. Evaluation of DNA methylation episignatures for diagnosis and phenotype correlations in 42 Mendelian neurodevelopmental disorders. Am J Hum Genet. 2020;106(3):356–370. doi:10.1016/j.ajhg.2020.01.019
   PubMed Web of Science ®Google Scholar
• Bowman CE, Wolfgang MJ. Role of the malonyl-CoA synthetase ACSF3 in mitochondrial metabolism. Adv Biol Regul. 2019;71:34–40. doi:10.1016/j.jbior.2018.09.002
   PubMedGoogle Scholar
• Sloan JL, Johnston JJ, Manoli I, et al. Exome sequencing identifies ACSF3 as a cause of combined malonic and methylmalonic aciduria. Nat Genet. 2011;43(9):883–886. doi:10.1038/ng.908
   PubMed Web of Science ®Google Scholar
• Maltby VE, Lea RA, Graves MC, et al. Genome-wide DNA methylation changes in CD19+ B cells from relapsing-remitting multiple sclerosis patients. Sci Rep. 2018;8(1):1–10. doi:10.1038/s41598-018-35603-0
   PubMed Web of Science ®Google Scholar
• Association AP. Diagnostic and Statistical Manual of Mental Disorders. American Psychiatric Publishing; 2013.
   Google Scholar
• Maenner MJ, Shaw KA, Baio J. Prevalence of autism spectrum disorder among children aged 8 years—autism and developmental disabilities monitoring network, 11 sites, United States, 2016. MMWR Surveill Summ. 2020;69(4):1. doi:10.15585/mmwr.ss6904a1
   Web of Science ®Google Scholar
• Ladd-Acosta C, Hansen KD, Briem E, Fallin MD, Kaufmann WE, Feinberg AP. Common DNA methylation alterations in multiple brain regions in autism. Mol Psychiatry. 2014;19(8):862–871. doi:10.1038/mp.2013.114
   PubMed Web of Science ®Google Scholar
• Stathopoulos S, Gaujoux R, Lindeque Z, et al. DNA methylation associated with mitochondrial dysfunction in a South African autism spectrum disorder cohort. Autism Res. 2020;13(7):1079–1093.
   PubMed Web of Science ®Google Scholar
• Harrington MA, Jones PA, Imagawa M, et al. Cytosine methylation does not affect binding of transcription factor Sp1. Proc Natl Acad Sci U S A. 1988;85(7):2066–2070. doi:10.1073/pnas.85.7.2066
   PubMed Web of Science ®Google Scholar
• Wang Y-W, Ma X, Zhang Y-A, et al. ITPKA gene body methylation regulates gene expression and serves as an early diagnostic marker in lung and other cancers. J Thorac Oncol. 2016;11(9):1469–1481. doi:10.1016/j.jtho.2016.05.010
   PubMed Web of Science ®Google Scholar
• Hanseem I, Anitha A, Nakamura K, et al. Elevated transcription factor specificity protein 1 in autistic brains alters the expression of autism candidate genes. Biol Psychiatry. 2012;71(5):410–418. doi:10.1016/j.biopsych.2011.09.020
   PubMed Web of Science ®Google Scholar