Morphological variation and intraspecific phylogeny of the ubiquitous species Chara braunii (Charales, Charophyceae) in Japan

REFFERENCES

• Braun A. & Noldstedt C.F.O. 1882. Fragmente einer Monographie der Characeen. Nach den hinterlassenen Manuscripten A. Braun's herausgegeben von Dr. Otto Nordstedt. Abhandlungen der Königlichen Akademie der Wissenschaften zu Berlin 1882: 1–211, pl. I—VIII.
   Google Scholar
• Casanova M.T. 2005. An overview of Chara L. in Australia (Characeae, Charophyta). Australian Systematic Botany 18: 25–39.
   Web of Science ®Google Scholar
• Fawley M.W. & Fawley K.P. 2004. A simple and rapid technique for the isolation of DNA from microalgae. Journal of Phycology 40: 223–225.
   Web of Science ®Google Scholar
• Felsenstein J. 1985. Confidence limits on phylogenies: an approach using bootstrap. Evolution 38: 16–24.
   Web of Science ®Google Scholar
• Gmelin C.C. 1826. Flora Badensis Alsatica, vol. 4. pp. 643–647.
   Google Scholar
• Imahori K. 1954. Ecology, phytogeography and taxonomy of the Japanese Charophyta. Kanazawa University Press, Kanazawa, Japan. 234 pp.
   Google Scholar
• Kadono Y. 1994. Aquatic plants of Japan. Bun-ichi, Tokyo, Japan. 179 pp. [in Japanese]
   Google Scholar
• Karol K.G., McCourt R.M., Cimino M.T. & Delwiche C.F. 2001. The closest living relatives of land plants. Science 294: 2351–2353.
   PubMed Web of Science ®Google Scholar
• Kasai F., Kawachi M., Erata M. & Watanabe M.M. (Eds) 2004. NIES-Collection. List of Strains. Microalgae and Protozoa, 7th ed. National Institute for Environmental Studies, Tsukuba, Japan. 257 pp.
   Google Scholar
• Kasaki H. 1964. The Charophyta from the lakes of Japan. Journal of the Hattori Botanical Laboratory 27: 215–314.
   Google Scholar
• Kato S., Higuchi S., Kondo Y., Kitano S., Nozaki H. & Tanaka J. 2005. Rediscovery of the wild-extinct species Nitellopsis obtusa (Charales) in Lake Kawaguchi, Japan. Journal of Japanese Botany 80: 84–91.
   Google Scholar
• McCourt R.M., Karol K.G., Guerlesquin M. & Feist M. 1996. Phylogeny of extant genera in the family Characeae (Charales, Charophyceae) based on rbcL sequences and morphology. American Journal of Botany 83: 125–131.
   Web of Science ®Google Scholar
• McCourt R.M., Karol K.G., Casanova M.T. & Feist M. 1999. Monophyly of genera and species of Characeae based on rbcL sequences, with special reference to Australian and European Lychnothamnus barbatus (Characeae: Charophyceae). Australian Journal of Botany 47: 361–369.
   Web of Science ®Google Scholar
• Moss B. 1980. Ecology of fresh waters. Blackwell Scientific Publications, oxford. 302 pp.
   Google Scholar
• Ohyama K., Fukuzawa H., Kohchi T., Shirai H., Sano T., Sano S., Umesono K., Shiki Y., Takeuchi M., Chang Z., Aota S., Inokuchi H. & Ozeki H. 1986. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322: 572–574.
   Web of Science ®Google Scholar
• Posada D. & Crandall K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817–818.
   PubMed Web of Science ®Google Scholar
• Proctor V.W. 1970. Taxonomy of Chara braunii: an experimental approach. Journal of Phycology 6: 317–321.
   Google Scholar
• Saitou N. & Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406–425.
   PubMed Web of Science ®Google Scholar
• Sakayama H., Nozaki H., Kasaki H. & Hara Y. 2002. Taxonomic re-examination of Nitella (Charales, Charophyceae) from Japan, based on microscopical studies of oospore wall ornamentation and rbcL gene sequences. Phycologia 41: 397–408.
   Web of Science ®Google Scholar
• Sakayama H., Hara Y. & Nozaki H. 2004. Taxonomic reexamination of Nitella (Charales, Charophyceae) from Asia, and phylogenetic relationship within the genus based on rbcL and atpB sequences. Phycologia 43: 91–104.
   Web of Science ®Google Scholar
• Sanders E.R., Karol K.G. & McCourt R.M. 2003. Occurrence of matK in a trnK group II intron in charophyte green algae and phylogeny of the Characeae. American Journal of Botany 90: 628–633.
   PubMed Web of Science ®Google Scholar
• Swofford D.L. 2002. PAUP^*: phylogenetic analysis using parsimony (^*and other methods), version 4.0b10. Sinauer Associates, Sunderland, MA.
   Google Scholar
• Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F. & Higgins D.G. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876–4882.
   PubMed Web of Science ®Google Scholar
• Wood R.D. 1965. Monograph of the Characeae. In: A revision of the Characeae (Ed. by R.D. Wood & K. Imahori), vol. 1. J. Cramer, Weinheim. 904 pp.
   Google Scholar
• Zaneveld J.S. 1940. The Charophyta of Malaysia and adjacent countries. Blumea 4: 1–224.
   Google Scholar