Cyst–theca relationship and phylogenetic positions of Protoperidinium (Peridiniales, Dinophyceae) species of the sections Conica and Tabulata, with description of Protoperidinium shanghaiense sp. nov.

REFERENCES

• Abé T. 1927. Report of the biological survey of Mutsu Bay. 3. Notes on the protozoan fauna of Mutsu Bay. I. Peridiniales. Science Reports of the Tôhoku Imperial University, Fourth Series, Biology, Sendai Japan 2: 383–438.
   Google Scholar
• Baldwin R.P. 1987. Dinoflagellate resting cysts isolated from sediments in Marlborough Sounds, New Zealand. New Zealand Journal of Marine and Freshwater Research 21: 543–553.
   Web of Science ®Google Scholar
• Balech E. 1974. El Genero “Protoperidinium” Bergh, 1881 (Peridinium Ehrenberg, 1831, partim). Revista del Museo Argentino de Ciencias Naturales “Bernardino Rivadavia” e Instituto Nacional de Investigación de las Ciencias Naturales 4: 1–79.
   Google Scholar
• Balech E. 1988. Los dinoflagellados del Atlantico sudoccidental. Publicaciones Especiales Instituto Español de Oceanografia, Madrid. 310 pp.
   Google Scholar
• Balech E. & Soares L.D.O. 1966. Dos Dinoflagelados de la Bahia de Guanabara y proximi dades (Brasil). Neotropica 12: 103–109.
   Google Scholar
• Boc A., Diallo A.B. & Makarenkov V. 2012. T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks. Nucleic Acids Research 40: W573–W579.
   PubMed Web of Science ®Google Scholar
• Bradford M.R. 1975. New dinoflagellate cyst genera from the recent sediments of the Persian Gulf. Canadian Journal of Botany 53: 3064–3074.
   Google Scholar
• Bradford, M.R. 1977. New species attributable to the dinoflagellate cyst genus Lejeunia Gerlach, 1961 emend. lentin and Williams 1975. Grana 16: 45–59.
   Google Scholar
• Bujak J.P. & Davies E.H. 1983. Modern and fossil Peridiniineae. American Association of Stratigraphic Palynologists Contribution Series 13: 1–204.
   Google Scholar
• Dangeard P. 1927a. Phytoplancton de la croisière du “Sylvana” (Févier–Juin 1913). Institut océanographique, Monaco, Annales, n. sér. 4: 287–405.
   Google Scholar
• Dangeard P. 1927b. Péridiniens nouveaux ou peu connus de la croisière du “Sylvana”. Bulletin de Institut océanographique, Monaco 491: 1–16.
   Google Scholar
• Daugbjerg N., Hansen G., Larsen J. & Moestrup Ø. 2000. Phylogeny of some of the major genera of dinoflagellates based on ultrastructure and partial LSU rDNA sequence data, including the erection of three new genera of unarmoured dinoflagellates. Phycologia 39: 302–317.
   Web of Science ®Google Scholar
• Dekeyzer S. 2008. Variation of dinoflagellates and their cysts in sediment traps off Cape Blanc (Africa NW) in relation to upwelling-filament dynamics. Master's thesis. Ghent University, Ghent. 30 pp.
   Google Scholar
• Dodge J. 1983. Ornamentation of thecal plates in Protoperidinium (Dinophyceae) as seen by scanning electron microscopy. Journal of Plankton Research 5: 119–127.
   Web of Science ®Google Scholar
• Ellegaard M., Christensen N.F. & Moestrup Ø. 1994. Dinoflagellate cysts from recent Danish marine sediments. European Journal of Phycology 29: 183–194.
   Web of Science ®Google Scholar
• Faust M.A. 2006. Creation of the subgenus Testeria Faust subgen. nov. Protoperidinium Bergh from the SW Atlantic Ocean: Protoperidinium novella sp. nov. and Protoperidinium concinna sp. nov. Dinophyceae. Phycologia 45: 1–9.
   Web of Science ®Google Scholar
• Fensome R.A., Taylor F.J.R., Norris G., Sarjeant W.A.S., Wharton D.I. & Williams G.L. 1993. A classification of fossil and living dinoflagellates. Micropaleontology Special Publication 7: 1–245.
   Google Scholar
• Fritz L. & Triemer R. 1985. A rapid simple technique utilizing calcofluor white M2R for the visualization of dinoflagellate thecal plates. Journal of Phycology 21: 662–664.
   Web of Science ®Google Scholar
• Fukuyo Y., Takano H., Chihara M. & Matsuoka K. 1990. Red tide organisms in Japan – An illustrated taxonomic guide (Ed. by Y. Fukuyo, H. Takano, M. Chihara & K. Matsuoka), 407 p. Uchida Rokakuho Co. Ltd., Tokyo, Japan. (In Japanese/English).
   Google Scholar
• Gómez F. 2012. A checklist and classification of living dinoflagellates (Dinoflagellata, Alveolata). CICIMAR Oceánides 27: 65–140.
   Google Scholar
• Gran H.H. 1900. Hydrographic-biological studies of the North Atlantic Ocean and the coast of Nordland. Norwegian Fishery and Marine Investigation, Report 1: 1–89.
   Google Scholar
• Gran H.H. 1902. Das Plankton des Norwegischen Nordmeeres von biolog. und hydrograph. Gesichtspunkten behandelt. Norwegian Fishery and Marine Investigation, Report 2: 1–222.
   Google Scholar
• Guillard R.R.L. & Ryther J.H. 1962. Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt and Detonula confervacea Cleve. Canadian Journal of Microbiology 8: 229–239.
   PubMed Web of Science ®Google Scholar
• Halim Y. 1967. Dinoflagellates of the South-East Caribbean Sea (East-Venezuela). Internationale Revue der gesamten Hydrobiologie und Hydrographie 52: 701–755.
   Google Scholar
• Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. pp. 95–98.
   Google Scholar
• Harland R. 1982. A review of recent and quaternary organic-walled dinoflagellate cysts of the genus Protoperidinium. Palaeontology 25: 369–397.
   Web of Science ®Google Scholar
• He C-Q. & Sun X-K. 1991. Dinoflagellate cysts from Quaternary sediments of Nansha, South China Sea. In: The Multidisciplinary Oceanographic Expedition Team of Academia Sinica to the Nansha Islands (Ed. by Quaternary Biological Groups of the Nansha Islands and the Neighbouring Waters), pp. 266–302. Zhongshan University Publishing House, Guangzhou, China.
   Google Scholar
• Hoppenrath M. & Leander B.S. 2010. Dinoflagellate phylogeny as inferred from heat shock protein 90 and ribosomal gene sequences. PloS one 5: e13220.
   PubMed Web of Science ®Google Scholar
• Hoppenrath M., Elbrachter M. & Drebes G. 2009. Marine phytoplankton. Selected microphytoplankton species from the North Sea around Helgoland and Sylt. Kleine Senckenberg-Reihe 49. 264 pp.
   Google Scholar
• Jörgensen E. 1912. Bericht über die von der schwedischen Hydrographisch- Biologischen Kommission in den schwedischen Gewässern in den Jahren 1909–1910 eingesammelten Planktonproben. Svenska Hydrogr-Biol Komm Skr. 4: 1–20.
   Google Scholar
• Katoh K., Kuma K., Toh H. & Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511–518.
   PubMed Web of Science ®Google Scholar
• Kawami H. & Matsuoka K. 2009. A new cyst-theca relationship for Protoperidinium parthenopes (Peridiniales, Dinophyceae). Palynology 33: 11–18.
   Web of Science ®Google Scholar
• Kawami H., Wezel R.V., Koeman R.P.T. & Matsuoka K. 2009. Protoperidinium tricingulatum sp. nov. (Dinophyceae), a new motile form of a round, brown, and spiny dinoflagellate cyst. Phycological Research 57: 259–267.
   Web of Science ®Google Scholar
• Kobayashi S. & Matsuoka K. 1984. Cyst and theca forms of Protoperidinium conicum (Gran) Balech (Dinophyceae). Japanese Journal of Phycology 32: 251–256.
   Google Scholar
• Kofoid C.A. 1907. New species of dinoflagellates. Museum of Comparative Zoology at Harvard College, Bulletin 50: 163–207.
   Google Scholar
• Lewis J. & Dodge J.D. 1987. The cyst-theca relationship of Protoperidinium americanum (Gran & Braarud) Balech. Journal of Micropalaeontology 6: 113–121.
   Google Scholar
• Lewis J., Dodge J.D. & Tett P. 1984. Cyst-theca relationships in some Protoperidinium species (Peridiniales) from Scottish sea lochs. Journal of Micropalaeontology 3: 25–34.
   Google Scholar
• Liu T., Gu H., Mertens K. & Lan D. 2014. New dinoflagellate species Protoperidinium haizhouense sp. nov. (Peridiniales, Dinophyceae), its cyst-theca relationship and phylogenetic position within the Monovela group. Phycological Research 62: 109–124.
   Web of Science ®Google Scholar
• Matsuoka K. 1982. Protoperidinium pentagonum (Gran) Balech. In Synopsis of red-tide organisms. (Ed. by the working party in taxonomy in the Akashiwo Kenyukai), Sheet no. 108 (In Japanese).
   Google Scholar
• Matsuoka K. 1985. Organic-walled dinoflagellate cysts from surface sediments of Nagasaki Bay and Senzaki Bay, West Japan. Bulletin Faculty of Liberal Arts, Nagasaki University (Natural Science) 25: 21–115.
   Google Scholar
• Matsuoka K. 1987. Organic-walled dinoflagellate cysts from surface sediments of Akkeshi Bay and Lake Saroma, North Japan. Bulletin Faculty of Liberal Arts, Nagasaki University (Natural Science) 28: 35–123.
   Google Scholar
• Matsuoka K. & Kawami H. 2013. Phylogenetic subdivision of the genus Protoperidinium, (Peridiniales, Dinophyceae) with emphasis on the Monovela Group. In: Biological and geological perspectives of dinoflagellates (Ed. by J. M. Lewis, F. Marret & L. Bradley), pp. 267–276. The Micropalaeontological Society, Special Publications. Geological Society, London.
   Google Scholar
• Matsuoka K., Kobayashi S. & Iizuka S. 1982. Cysts of Protoperidinium divaricatum (Meunier) Parke et Dodge 1976 from surface sediments of Omura Bay, West Japan. Review of Palaeobotany and Palynology 38: 109–118.
   Web of Science ®Google Scholar
• Matzenauer L.v. 1933. Die Dinoflagellaten des Indischen Ozeans. Botanisches Archiv 35: 437–510.
   Google Scholar
• Mertens K.N., Yamaguchi A., Kawami H., Ribeiro S. & Leander B.S. 2012. Archaeperidinium saanichi sp. nov.: a new species based on morphological variation of cyst and theca within the Archaeperidinium minutum Jörgensen 1912 species complex. Marine Micropaleontology 96: 48–62.
   Web of Science ®Google Scholar
• Mertens K.N., Yamaguchi A., Takano Y., Pospelova V., Head M.J., Radi T., Pieńkowski A., Vernal A., Kawami H. & Matsuoka K. 2013. A new heterotrophic dinoflagellate from the Northeastern Pacific, Protoperidinium fukuyoi: cyst-theca relationship, phylogeny, distribution and ecology. Journal of Eukaryotic Microbiology 60: 545–563.
   PubMed Web of Science ®Google Scholar
• Meunier A. 1919. Microplankton de la Mer Flamande. III. Les Péridiniens. Le Musée royal d'histoire naturelle de Belgique, Mémoires 8: 3–116.
   Google Scholar
• Nehring S. 1994. Spatial distribution of dinoflagellate resting cysts in recent sediments of Kiel Bight, Germany (Baltic Sea). Ophelia 39: 137–158.
   Web of Science ®Google Scholar
• Nie D. 1939. On the thecal morphology of Peridinium with special reference to the ventral area. Science (China) 23: 584–600.
   Google Scholar
• Orr R.J.S., Murray S.A., Stüken A., Rhodes L. & Jakobsen K.S. 2012. When naked became armored: an eight-gene phylogeny reveals monophyletic origin of theca in dinoflagellates. PloS one 7: e50004.
   PubMed Web of Science ®Google Scholar
• Paulsen O. 1931. Études sur le microplancton de la mer d'Alboran. Ministerio de Fomento, Instituto Español de Oceanografía 4: 1–108.
   Google Scholar
• Pavillard J. 1916. Recherches sur les Péridiniens du Golfe du Lion. Institut de Botanique de l'Université de Montpellier et de la Station Zoologique de Cette, Travail, série mixte, Mémoire 4: 1–73.
   Google Scholar
• Posada D. 2008. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25: 1253–1256.
   PubMed Web of Science ®Google Scholar
• Potvin É., Rochon A. & Lovejoy C. 2013. Cyst-theca relationship of the arctic dinoflagellate cyst Islandinium minutum (Dinophyceae) and phylogenetic position based on SSU rDNA and LSU rDNA. Journal of Phycology 192: 848–866.
   Google Scholar
• Reid P. 1977. Peridiniacean and glenodiniacean dinoflagellate cysts from the British Isles. Nova Hedwigia 29: 429–463.
   Web of Science ®Google Scholar
• Ribeiro S., Lundholm N., Amorim A. & Ellegaard M. 2010. Protoperidinium minutum (Dinophyceae) from Portugal: cyst-theca relationship and phylogenetic position on the basis of single-cell SSU and LSU rDNA sequencing. Phycologia 49: 48–63.
   Web of Science ®Google Scholar
• Ronquist F. & Huelsenbeck J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
   PubMed Web of Science ®Google Scholar
• Sarai C., Kawami H. & Matsuoka K. 2013. Two new species formally attributed to Protoperidinium oblongum (Aurivillius) Park et Dodge (Peridiniales, Dinophyceae): evidence from cyst incubation experiments. Review of Palaeobotany and Palynology 192: 103–118.
   Web of Science ®Google Scholar
• Schiller J. 1937. Dinoflagellatae (Peridineae) in monographischer Behandlung. In: Kryptogamen-Flora von Deutschland, Österreich und der Schweiz (Ed. by Rabenhorst L.), pp. 1–589. Akademische, Leipzig.
   Google Scholar
• Scholin C.A., Herzog M., Sogin M. & Anderson D.M. 1994. Identification of group- and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). II. Sequence analysis of a fragment of the LSU rRNA gene. Journal of Phycology 30: 999–1011.
   Web of Science ®Google Scholar
• Sonneman J. & Hill D.R.A. 1997. A taxonomic survey of cyst-producing dinoflagellates from recent sediments of Victorian coastal waters, Australia. Botanica Marina 40: 149–178.
   Web of Science ®Google Scholar
• Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688–2690.
   PubMed Web of Science ®Google Scholar
• Steidinger K. & Williams J. 1970. Dinoflagellates. Memoirs of the hourglass cruises, Vol. 2. Florida Department of Natural Resources Marine Research Laboratory. 251 pp.
   Google Scholar
• Taylor F.J.R. 1976. Dinoflagellates from the International Indian Ocean Expedition. Biblotheca Botanica 132: 1–234.
   Google Scholar
• Taylor F.J.R. 1980. On dinoflagellate evolution. BioSystems 13: 65–108.
   PubMed Web of Science ®Google Scholar
• Toriumi S. & Dodge J.D. 1993. Thecal apex structure in the peridiniaceae (Dinophyceae). European Journal of Phycology 28: 39–45.
   Web of Science ®Google Scholar
• Wall D. & Dale B. 1968. Modern dinoflagellate cysts and evolution of the Peridiniales. Micropaleontology 14: 265–304.
   Google Scholar
• Yamaguchi A. & Horiguchi T. 2005. Molecular phylogenetic study of the heterotrophic dinoflagellate genus Protoperidinium (Dinophyceae) inferred from small subunit rRNA gene sequences. Phycological Research 53: 30–42.
   Web of Science ®Google Scholar
• Yamaguchi A., Kawamura H. & Horiguchi T. 2006. A further phylogenetic study of the heterotrophic dinoflagellate genus, Protoperidinium (Dinophyceae) based on small and large subunit ribosomal RNA gene sequences. Phycological Research 54: 317–329.
   Web of Science ®Google Scholar
• Yamaguchi A., Kawamura H. & Horigughi T. 2007. The phylogenetic position of an unusual Protoperidinium species, P. bipes (Peridiniales, Dinophyceae), based on small and large subunit ribosomal RNA gene sequences. Phycologia 46: 270–276.
   Web of Science ®Google Scholar
• Yamaguchi A., Hoppenrath M., Pospelova V., Horiguchi T. & Leander B.S. 2011. Molecular phylogeny of the marine sand-dwelling dinoflagellate Herdmania litoralisand and an emended description of the closely related planktonic genus Archaeperidinium Jörgensen. European Journal of Phycology 46: 98–112.
   Web of Science ®Google Scholar
• Zonneveld K.A., Marret F., Versteegh G.J., Bogus K., Bonnet S., Bouimetarhan I., Crouch E., de Vernal A., Elshanawany R., Edwards L., Esper O., Forke S., Grøsfjeld K., Henry M., Holzwarth U., Kielt J-F., Kim S-Y., Ladouceur S., Ledu D., Chen L., Limoges A., Londeix L., Lu S-H., Mahmoud M. S., Marino G., Matsouka K. [sic], Matthiessen J., Mildenhal D.C. [sic], Mudie P., Neil H.L., Pospelova V., Qi Y., Radi T., Richerol T., Rochon A., Sangiorgi F., Solignac S., Turon J-L., Verleye T., Wang Y., Wang Z. & Young M. 2013. Atlas of modern dinoflagellate cyst distribution based on 2405 data points. Review of Palaeobotany and Palynology 191: 1–197.
   Web of Science ®Google Scholar