Pseudostriatella (Bacillariophyta): a description of a new araphid diatom genus based on observations of frustule and auxospore structure and 18S rDNA phylogeny

REFERENCES

• Altekar G., Dwarkadas S., Huelsenbeck J.P. & Ronquist F. 2004. Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407–415.
   PubMed Web of Science ®Google Scholar
• Alverson A.J., Cannone J.J., Gutell R.R. & Theriot E.C. 2006. The evolution of elongate shape in diatoms. Journal of Phycology 42: 655–668.
   Web of Science ®Google Scholar
• Amato A., Orsini L., D'Alelio D. & Montresor M. 2005. Life cycle, size reduction patterns, and ultrastructure of the pennate planktonic diatom Pseudo-nitzschia delicatissima (Bacillariophyta). Journal of Phycology 41: 542–556.
   Web of Science ®Google Scholar
• Anonymous. 1975. Proposals for a standardization of diatom terminology and diagnoses. Nova Hedwigia, Beiheft 53: 323–354.
   Google Scholar
• Cahoon L.B. 1999. The role of benthic microalgae in neritic ecosystems. Oceanography and Marine Biology. An Annual Review 37: 47–86.
   Web of Science ®Google Scholar
• Chepurnov V.A., Mann D.G., Sabbe K. & Vyverman W. 2004. Experimental studies on sexual reproduction in diatoms. International Review of Cytology 237: 91–154.
   PubMed Web of Science ®Google Scholar
• Cohn S.A., Spurck T.P., Pickett-Heaps J.D. & Edgar L.A. 1989. Perizonium and initial valve formation in the diatom Navicula cuspidata (Bacillariophyceae). Journal of Phycology 25: 15–26.
   Web of Science ®Google Scholar
• Crawford R.M. 1974. The auxospore wall of the marine diatom Melosira nummuloides (Dillw.) C. Ag. and related species. British Phycological Journal 9: 9–20.
   Google Scholar
• Crawford R.M. 1975. The frustule of the initial cells of some species of the diatom genus Melosira C. Agardh. Nova Hedwigia, Beiheft 53: 37–50.
   Google Scholar
• Crawford R.M., Gardner C. & Medlin L.K. 1994. The genus Attheya. I. A description of four new taxa, and the transfer of Gonioceros septentrionalis and G. armatus. Diatom Research 9: 27–51.
   Google Scholar
• Davidovich N.A. 2001. Species-specific sizes and size range of sexual reproduction in diatoms. In: Proceedings of the 16th International Diatom Symposium (Ed. by A. Economou-Amilli), University of Athens, Greece. pp. 191–196.
   Google Scholar
• Elwood H.J., Olsen G.J. & Sogin M.L. 1985. The small subunit ribosomal DNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonichia pustulata. Molecular Biology and Evolution 2: 399–410.
   PubMed Web of Science ®Google Scholar
• Eppley R.W., Holmes R.W. & Strickland J.D.H. 1967. Sinking rates of the marine phytoplankton measured with a fluorochrometer. Journal of Experimental Marine Biology and Ecology 1: 191–208.
   Google Scholar
• Geitler L. 1932. Der Formwechsel der pennaten Diatomeen. Archiv für Protistenkunde 78: 1–226.
   Google Scholar
• Gillespie J.J., McKenna C.H., Yoder M.J., Gutell R.R., Johnston J.S., Kathirithamby J. & Cognato A.I. 2005. Assessing the odd secondary structural properties of nuclear small subunit ribosomal RNA sequences (SSU) of the twisted-wing parasites (Insecta: Strepsiptera). Insect Molecular Biology 14: 625–643.
   Web of Science ®Google Scholar
• Guillou L., Chrétiennot-Dinet M.-J., Medlin L.K., Claustre H., Loiseaux-de Goër S. & Vaulot D. 1999. Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae class. nov. (Heterokonta). Journal of Phycology 35: 368–381.
   Web of Science ®Google Scholar
• Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
   Google Scholar
• Hancock J.M. & Vogler A.P. 2000. How slippage-derived sequences are incorporated into rRNA variable-region secondary structure: implications for phylogeny reconstruction. Molecular Phylogenetics and Evolution 14: 366–374.
   Web of Science ®Google Scholar
• Hasle G.R. 1974. The ‘mucilage pore’ of pennate diatoms. Nova Hedwigia, Beiheft 45: 167–194.
   Google Scholar
• Huelsenbeck J.P. & Ronquist F. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754–755.
   PubMed Web of Science ®Google Scholar
• Hustedt F. 1931. Die Kieselalgen Deutschlands, Österreichs und der Schweiz. In: Dr L Rabenhorsts Kryptogamenflora von Deutschland, Österreich und der Schweizvol, vol. 7(2:1). Akademische Verlagsgesellschaft, Leipzig, Germany. pp. 1–176.
   Google Scholar
• Idei M. & Nagumo T. 2002. Auxospore structure of the marine diatom genus Lampriscus with triangular/quadrangular forms. In: Abstracts, 17th International Diatom Symposium (Ed. by M. Poulin), Ottawa, Canada. 166 pp.
   Google Scholar
• Kaczmarska I., Bates S.S., Ehrman J.M. & Léger C. 2000. Fine structure of the gamete, auxospore and initial cell in the pennate diatom Pseudo-nitzschia multiseries (Bacillariophyta). Nova Hedwigia 71: 337–357.
   Web of Science ®Google Scholar
• Kaczmarska I., Ehrman J.M. & Bates S.S. 2001. A review of auxospore structure, ontogeny and diatom phylogeny. In: Proceedings of the 16th International Diatom Symposium (Ed. by A. Economou-Amilli), University of Athens, Greece. pp. 153–168.
   Google Scholar
• Kobayashi A., Osada K., Nagumo T. & Tanaka J. 2001. An auxospore of Arachnoidiscus ornatus Ehrenberg. In: Proceedings of the 16th International Diatom Symposium (Ed. by A. Economou-Amilli), University of Athens, Greece. pp. 197–204.
   Google Scholar
• Kociolek J.P. & Rhode K. 1998. Raphe vestiges in Asterionella species from Madagascar: evidence for a polyphyletic origin of the araphid diatoms? Cryptogamie: Algologie 19: 57–74.
   Web of Science ®Google Scholar
• Kooistra W.H.C.F., de Stefano M., Mann D.G. & Medlin L.K. 2003a. The phylogeny of the diatoms. Progress in Molecular and Subcellular Biology 33: 59–97.
   PubMedGoogle Scholar
• Kooistra W., De Stefano M., Mann D.G., Salma N. & Medlin L.K. 2003b. Phylogenetic position of Toxarium, a pennate-like lineage within centric diatoms (Bacillariophyceae). Journal of Phycology 39: 185–197.
   Web of Science ®Google Scholar
• Kooistra W.H.C.F., Forlani G., Sterrenburg F.A.S. & De Stefano M. 2004. Molecular phylogeny and morphology of the marine diatom Talaroneis posidoniae gen. et sp. nov. (Bacillariophyta) advocate the return of the Plagiogrammaceae to the pennate diatoms. Phycologia 43: 58–67.
   Web of Science ®Google Scholar
• Kühn S.F. & Brownlee C. 2005. Membrane organisation and dynamics in the marine diatom Coscinodiscus wailesii (Bacillariophyceae). Botanica Marina 48: 297–305.
   Web of Science ®Google Scholar
• Kumar R. 1978. Auxospore formation in species of the marine diatom Licmophora Agardh. Veröffentlichungen des Instituts für Meeresforschungen in Bremerhaven 17: 15–20.
   Google Scholar
• Kützing F.T. 1844. Die kieselschaligen Bacillarien oder Diatomeen. Nordhausen, Germany. 152 pp.
   Google Scholar
• Mann D.G. 1982a. Structure, life history and systematics of Rhoicosphenia (Bacillariophyta) I. The vegetative cell of Rh. curvata. Journal of Phycology 18: 162–176.
   Web of Science ®Google Scholar
• Mann D.G. 1982b. Structure, life history and systematics of Rhoicosphenia (Bacillariophyta). II. Auxospore formation and perizonium structure of Rh. curvata. Journal of Phycology 18: 264–274.
   Web of Science ®Google Scholar
• Mann D.G. 1984. An ontogenetic approach to diatom systematics. In: Proceedings of the 7th International Diatom Symposium (Ed. by D.G. Mann), O. Koeltz, Koenigstein, Germany. pp. 113–144.
   Google Scholar
• Mann G.D. 1994. The origins of shape and form in diatoms: the interplay between morphogenetic studies and systematics. In: Shape and form in plants and fungi (Ed. by D.S. Ingram & A.J. Hudson), Academic Press, London. pp. 17–38.
   Google Scholar
• Mann D.G. & Evans M.K. 2007. Molecular genetics and the neglected art of diatomics. In: Unravelling the algae — the past, present and future of algal molecular systematics (Ed. by J. Brodie & J.M. Lewis), CRC Press, Boca Raton, FL, USA. pp. 232–266.
   Google Scholar
• Mann D.G. & Stickle A.J. 1993. Life history and systematics of Lyrella. Nova Hedwigia, Beiheft 106: 43–70.
   Google Scholar
• Mann D.G., Chepurnov V.A. & Idei M. 2003. Mating system, sexual reproduction and auxosporulation in the anomalous raphid diatom Eunotia (Bacillariophyta). Journal of Phycology 39: 1067–1084.
   Web of Science ®Google Scholar
• Medlin L.K. & Kaczmarska I. 2004. Evolution of the diatoms: V. Morphological and cytological support for the major clades and a taxonomic revision. Phycologia 43: 245–270.
   Web of Science ®Google Scholar
• Medlin L.K., Crawford R.M. & Andersen R.A. 1986. Histochemical and ultrastructural evidence for the function of the labiate process in the movement of centric diatoms. British Phycological Journal 21: 297–301.
   Web of Science ®Google Scholar
• Medlin L., Elwood H.J., Stickel S. & Sogin M.L. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding regions. Gene 71: 491–499.
   PubMed Web of Science ®Google Scholar
• Medlin L.K., Kooistra W.H.C.F. & Schmid A.M.-M. 2000. A review of the evolution of the diatoms — a total approach using molecules, morphology and geology. In: The origin and early evolution of the diatoms: fossil, molecular and biogeographical approaches (Ed. by A. Witkowski & J. Sieminska), Szafer Institute of Botany, Polish Academy of Science, Cracow, Poland. pp. 13–35.
   Google Scholar
• Medlin L.K., Jung I., Bahulikar R., Mendgen K., Kroth P. & Kooistra W.H.C.F. 2008a. Evolution of the diatoms. VI. Assessment of the new genera in the araphids using molecular data. Nova Hedwigia 133: 81–100.
   Google Scholar
• Medlin L.K., Sato S., Mann D.G. & Kooistra W.H.C.F. 2008b. Molecular evidence confirms sister relationship of Ardissonea, Climacosphenia and Toxarium within the bipolar centric diatoms (Bacillariophyta, Mediophyceae) and cladistic analyses confirms that extremely elongated shape has arisen twice in the diatoms Journal of Phycology: in press.
   Google Scholar
• Morales E. 2001. Morphological studies in selected fragilarioid diatoms (Bacillariophyceae) from Connecticut waters (U.S.A.). Proceedings of the Academy of Natural Sciences of Philadelphia 151: 39–54.
   Web of Science ®Google Scholar
• Morales E. 2005. Observations of the morphology of some known and new fragilarioid diatoms (Bacillariophyceae) from rivers in the USA. Phycological Research 53: 113–133.
   Web of Science ®Google Scholar
• Nagumo T. 2003. Taxonomic studies of the subgenus Amphora Cleve of the genus Amphora (Bacillariophyceae) in Japan. Bibliotheca Diatomologica 49: 1–265.
   Google Scholar
• Nagumo T. & Kobayashi H. 1990. The bleaching method for gently loosening and cleaning a single diatom frustule. Diatom 5: 45–50.
   Google Scholar
• Navarro N.J. & Williams D.M. 1991. Description of Hyalosira tropicalis sp. nov. (Bacillariophyta) with notes on the status of Hyalosira Kützing and Microtabella Round. Diatom Research 6: 327–336.
   Google Scholar
• Pickett-Heaps J.D., Hill D.R.A. & Wetherbee R. 1986. Cellular movement in the centric diatom Odontella sinensis. Journal of Phycology 22: 334–339.
   Web of Science ®Google Scholar
• Pickett-Heaps J.D., Schmid A.-M.M. & Edgar L.A. 1990. The cell biology of diatom valve formation. Progress in Phycological Research 7: 1–168.
   Google Scholar
• Posada D. & Crandall K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817–818.
   PubMed Web of Science ®Google Scholar
• Poulíčková A. & Mann D.G. 2006. Sexual reproduction in Navicula cryptocephala (Bacillariophyceae). Journal of Phycology 42: 872–886.
   Web of Science ®Google Scholar
• Poulíčková A., Mayama S., Chepurnov V.A. & Mann D.G. 2007. Heterothallic auxosporulation, incunabula and perizonium in Pinnularia (Bacillariophyceae). European Journal of Phycology 42: 367–390.
   Web of Science ®Google Scholar
• Ronquist F. & Huelsenbeck J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
   PubMed Web of Science ®Google Scholar
• Roshchin A.M. 1994. Zhiznennye tsikly diatomovykh vodoroslej. Naukova Dumka, Kiev. 170 pp.
   Google Scholar
• Ross R., Cox E.J., Karayeva N.I., Mann D.G., Paddock T.B.B., Simonsen R. & Sims P.A. 1979. An amended terminology for the siliceous components of the diatom cell. Nova Hedwigia, Beiheft 64: 513–533.
   Google Scholar
• Round F.E., Crawford R.M. & Mann D.G. 1990. The diatoms: biology and morphology of the genera. Cambridge university Press, Cambridge, UK. 747 pp.
   Google Scholar
• Round F.E., Hallsteinsen H. & Paasche E. 1999. On a previously controversial “fragilarioid” diatom now placed in a new genus Nanofrustulum. Diatom Research 14: 343–356.
   Google Scholar
• Sato S., Nagumo T. & Tanaka J. 2004. Auxospore formation and the morphology of the initial cell of the marine araphid diatom Gephyria media (Bacillariophyceae). Journal of Phycology 40: 684–691.
   Web of Science ®Google Scholar
• Sato S., Mann D.G., Nagumo T., Tanaka J. & Medlin L.K. 2008a. Life cycle of Grammatophora marina (Bacillariophyta) with special reference to its auxospore fine structure. Phycologia 47: 12–27.
   Web of Science ®Google Scholar
• Sato S., Kuriyama K., Tadano T. & Medlin K.L. 2008b. Auxospore fine structure in a marine araphid diatom Tabularia parva (Bacillariophyta). Diatom Research. in press.
   Google Scholar
• Schmid A.-M.M. 1994. Aspects of morphogenesis and function of diatom cell walls with implications for taxonomy. Protoplasma 181: 43–60.
   Web of Science ®Google Scholar
• Schmid A.-M.M. & Crawford R.M. 2001. Ellerbeckia arenaria (Bacillariophyceae): formation of auxospores and initial cells. European Journal of Phycology 36: 307–320.
   Web of Science ®Google Scholar
• Shull V.L., Vogler A.P., Baker M.D., Maddison D.R. & Hammond P.M. 2001. Sequence alignment of 18S ribosomal RNA and the basal relationships of adephagan beetles: evidence for monophyly of aquatic families and the placement of Trachypachidae. Systematic Biology 50: 945–969.
   PubMed Web of Science ®Google Scholar
• Sims P.A. & Holmes R.W. 1983. Studies on the “kittonii” group of Aulacodiscus species. Bacillaria 6: 267–292.
   Google Scholar
• Sims P.A., Mann D.G. & Medlin L.K. 2006. Evolution of the diatoms: insights from fossil, biological and molecular data. Phycologia 45: 361–402.
   Web of Science ®Google Scholar
• Sorhannus U. 2004. Diatom phylogenetics inferred based on direct optimization nuclear-encoded SSU rRNA sequences. Cladistics 20: 487–497.
   PubMed Web of Science ®Google Scholar
• Sorhannus U. 2007. A nuclear-encoded small-subunit ribosomal RNA timescale for diatom evolution. Marine Micropaleontology 65: 1–12.
   Web of Science ®Google Scholar
• Stamatakis A., Ludwig T. & Meier H. 2005. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21: 456–463.
   PubMed Web of Science ®Google Scholar
• Sullivan M.J. & Currin C.A. 2000. Community structure and functional dynamics of benthic microalgae in salt marshes. In: Concepts and controversies in tidal marsh ecology (Ed. by M.P. Weinstein & D.A. Kreeger), Kluwer Academic Publishers, Dordrecht, Germany. pp. 81–106.
   Google Scholar
• Swofford D.L. 2002. PAUP^*: phylogenetic analysis using parsimony (^* and other methods), ver. 4.0b10. Sinauer Associates, Sunderland, MA, USA.
   Google Scholar
• Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F. & Higgins D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24: 4876–4882.
   Web of Science ®Google Scholar
• Tiffany M.A. 2005. Diatom auxospore scales and early stages in diatom frustule morphogenesis: their potential for use in nanotechnology. Journal of Nanoscience and Nanotechnology 5: 131–139.
   PubMed Web of Science ®Google Scholar
• Toyoda K., Idei M., Nagumo T. & Tanaka J. 2005. Fine-structure of frustule, perizonium and initial valve of Achnanthes yaquinensis McIntire and Reimer (Bacillariophyceae). European Journal of Phycology 40: 269–279.
   Web of Science ®Google Scholar
• Toyoda K., Williams D.M., Tanaka J. & Nagumo T. 2006. Morphological investigations of the frustule, perizonium and initial valves of the freshwater diatom Achnanthes crenulata Grunow (Bacillariophyceae). Phycological Research 54: 173–182.
   Web of Science ®Google Scholar
• Trobajo R., Mann D.G., Chepurnov V.A., Clavero E. & Cox E.J. 2006. Auxosporulation and size reduction pattern in Nitzschia fonticola (Bacillariophyta). Journal of Phycology 42: 1353–1372.
   Web of Science ®Google Scholar
• Underwood G.J.C. & Kromkamp J. 1999. Primary production by phytoplankton and microphytobenthos in estuaries. Advances in Ecological Research 29: 93–153.
   Web of Science ®Google Scholar
• Van De Peer, Y., Caers A., De Rijk P. & De Wachter R. 1998. Database on the structure of small ribosomal subunit RNA. Nucleic Acids Research 26: 179–182.
   Web of Science ®Google Scholar
• Van de Peer Y., Neefs J.-M., De Rijk P. & De Wachter R. 1993. Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: calibration of the molecular clock. Journal of Molecular Evolution 37: 221–232.
   Web of Science ®Google Scholar
• Van Landingham S.L. 1978. Catalogue of the fossil and recent genera and species of diatoms and their synonyms. Part VII. Rhoicosphenia through Zygoceros. J. Cramer, Vaduz, Liechtenstein.
   Google Scholar
• von Stosch H.A. 1962. Über das Perizonium der Diatomeen. Vorträge aus dem Gesamtgebiet der Botanik 1: 43–52.
   Google Scholar
• von Stosch H.A. 1982. On auxospore envelopes in diatoms. Bacillaria 5: 127–156.
   Google Scholar
• von Stosch H.A. & Kowallik K.V. 1969. Der von Geitler aufgestellte Satz über die Notwendigkeit einer Mitose für jede Schalenbildung von Diatomeen. Beobachtung über die Reichweite und Überlegungen zu seiner zellmechanischen Bedeutung. Österreichische botanische Zeitschrift 116: 454–474.
   Google Scholar
• von Stosch H.A., Theil G. & Kowallik K.V. 1973. Entwicklungsgeschichtliche Untersuchungen an zentrischen Diatomeen. V. Bau und Lebenszyklus von Chaetoceros didymum, mit Beobachtungen über einige andere Arten der Gattung. Helgoländer wissenschaftliche Meeresuntersuchungen 25: 384–445.
   Google Scholar
• Witkowski A., Lange-Bertalot H. & Metzeltin D. 2000. Diatom flora of marine coasts I. Iconographia Diatomologica 7: 1–925.
   Google Scholar