235
Views
1
CrossRef citations to date
0
Altmetric
Research Article

Epigenome-Wide DNA Methylation Study of IgE Concentration in Relation to Self-Reported Allergies

, , , , , & show all
Pages 407-418 | Received 14 Nov 2016, Accepted 21 Dec 2016, Published online: 21 Mar 2017

References

  • Durham SR , YingS , VarneyVAet al. Cytokine messenger RNA expression for IL-3, IL-4, IL-5, and granulocyte/macrophage-colony-stimulating factor in the nasal mucosa after local allergen provocation: relationship to tissue eosinophilia . J. Immunol.148 ( 8 ), 2390 – 2394 ( 1992 ).
  • Galli SJ , TsaiM . IgE and mast cells in allergic disease . Nat. Med.18 ( 5 ), 693 – 704 ( 2012 ).
  • Jacobsen H , HerskindA , NielsenB , HusbyS . IgE in unselected like-sexed monozygotic and dizygotic twins at birth and at 6 to 9 years of age: high but dissimilar genetic influence on IgE levels . J. Clin. Immunol.107 ( 4 ), 659 – 663 ( 2001 ).
  • Strachan DP , WongHJ , SpectorTD . Concordance and interrelationship of atopic diseases and markers of allergic sensitization among adult female twins . J. Allergy Clin. Immunol.108 ( 6 ), 901 – 907 ( 2001 ).
  • Meyers DA , BeatyTH , FreidhoffLR , MarshDG . Inheritance of total serum IgE (basal levels) in man . Am. J. Hum. Genet.41 ( 1 ), 51 – 62 ( 1987 ).
  • Okhura N , HamaguchiM , MorikawaHet al. T cell receptor stimulation-induced epigenetic changes and Foxp3 expression are independent and complementary events required for Treg cell development . Immunity37 ( 5 ), 785 – 799 ( 2012 ).
  • Liang L , Willis-owenSAG , LapriseCet al. An epigenome-wide association study of total serum immunoglobulin E concentration . Nature520 , 670 – 674 ( 2015 ).
  • Everson TM , LyonsG , ZhangHet al. DNA methylation loci associated with atopy and high serum IgE: a genome-wide application of recursive Random Forest feature selection . Genome Med. doi:10.1186/s13073-015-0213-8 ( 2015 ) ( Epub ahead of print ).
  • Mascalzoni D , JanssensACJW , StewartAet al. Comparison of participant information and informed consent forms of five European studies in genetic isolated populations . Eur. J. Hum. Genet.18 , 296 – 302 ( 2010 ).
  • Johansson A , MarroniF , HaywardCet al. Common variants in the JAZF1 gene associated with height identified by linkage and genome-wide association analysis . Hum. Mol. Genet.18 , 373 – 380 ( 2009 ).
  • Hansen K , AryeeM . minfi: Analyze Illumina’s 450k methylation arrays, Vol. R package version 1.8.7 ( 2013 ).
  • Reinius LE , AcevedoN , JoerinkMet al. Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility . PLoS ONE7 ( 7 ), e41361 ( 2012 ).
  • Houseman EA , AccomandoWP , KoestlerDCet al. DNA methylation arrays as surrogate measures of cell mixture distribution . BMC Bioinformatics13 , 86 ( 2012 ).
  • Aulchenko YS , RipkeS , IsaacsA , van DuijnCM . GenABEL: An R library for genome-wide association analysis . Bioinformatics23 , 1294 – 1296 ( 2007 ).
  • R Development Core Team . R: A language and environment for statistical computing . R Foundation for Statistical Computing , Vienna, Austria . ISBN 3-900051-07-00 . www.R-project.org/ . R Found. Stat. Comput. Vienna, Austria ( 2012 ).
  • Besingi W , JohanssonÅ . Smoke-related DNA methylation changes in the etiology of human disease . Hum. Mol. Genet.23 , 2290 – 2297 ( 2014 ).
  • Pedersen BS , SchwartzDA , YangIV , KechrisKJ . Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values . Bioinformatics28 ( 22 ), 2986 – 2988 ( 2012 ).
  • Enroth S , DahlbomI , HanssonT , JohanssonÅ , GyllenstenU . Prevalence and sensitization of atopic allergy and coeliac disease in the Northern Sweden Population Health Study . Int. J. Circumpolar Health.72 , doi: 10.3402/ijch.v72i0.21403 ( 2013 ) ( Epub ahead of print ).
  • Kulkarni H , KosMZ , NearyJet al. Novel epigenetic determinants of Type 2 diabetes in Mexican American families . Hum. Mol. Genet.24 ( 18 ), 5330 – 5340 ( 2015 ).
  • Young B , LoweJS , StevensA , HeathJW . Wheater’s Functional Histology: a Text and Colour Atlas . Churchill Livingstone24 ( 18 ), 5330 – 5344 ( 2006 ).
  • Chu VT , FröhlichA , SteinhauserGet al. Eosinophils are required for the maintenance of plasma cells in the bone marrow . Nat. Immunol.12 ( 2 ), 151 – 159 ( 2011 ).
  • Kulkarni S , SitaruC , JakusZet al. PI3Kβ plays a critical role in neutrophil activation by immune complexes . Sci. Signal.4 ( 168 ), ra23 ( 2011 ).
  • Shindou H , HishikawaD , NakanishiHet al. A single enzyme catalyzes both platelet-activating factor production and membrane biogenesis of inflammatory cells. Cloning and characterization of acetyl-CoA:LYSO-PAF acetyltransferase . J. Biol. Chem.282 ( 9 ), 6532 – 6539 ( 2007 ).
  • Kruse S , MaoXQ , HeinzmannAet al. The Ile198Thr and Ala379Val variants of plasmatic PAF-acetylhydrolase impair catalytical activities and are associated with atopy and asthma . Am. J. Hum. Genet.66 ( 5 ), 1522 – 1530 ( 2000 ).
  • Zelensky AN , GreadyJE . The C-type lectin-like domain superfamily . FEBS J.272 ( 24 ), 6179 – 6217 ( 2005 ).
  • Takatsu K . Interleukin-5 and IL-5 receptor in health and diseases . Proc. Jpn. Acad. Ser. B Phys. Biol. Sci.87 ( 8 ), 463 – 485 ( 2011 ).
  • Perrin MJ , SubbiahRN , VandenbergJI , HillAP . Human ether-a-go-go related gene (hERG) K+ channels: function and dysfunction . Prog. Biophys. Mol. Biol.98 ( 2–3 ), 137 – 148 ( 2008 ).
  • Pardo LA , StühmerW . The roles of K(+) channels in cancer . Nat. Rev. Cancer14 ( 1 ), 39 – 48 ( 2014 ).
  • Sakuma S , UsaK , FujimotoY . The regulation of formation of prostaglandins and arachidonoyl-CoA from arachidonic acid in rabbit kidney medulla microsomes by linoleic acid hydroperoxide . Prostaglandins Other Lipid Mediat.79 ( 3–4 ), 271 – 277 ( 2006 ).
  • Aoki T , NarumiyaS . Prostaglandins and chronic inflammation . Trends Pharmacol. Sci.33 ( 6 ), 304 – 311 ( 2012 ).
  • Tomassini M , MagriniL , De PetrilloG , AdrianiE , BoniniS , BalsanoF . Serum levels of eosinophil cationic protein in allergic diseases and natural allergen exposure . J. Allergy Clin. Immunol.97 ( 6 ), 1350 – 1355 ( 1996 ).
  • Yarova PL , StewartAL , SathishVet al. Calcium-sensing receptor antagonists abrogate airway hyperresponsiveness and inflammation in allergic asthma . Sci. Transl. Med.7 ( 284 ), 284ra60 ( 2015 ).
  • Aggarwal A , Prinz-WohlgenanntM , TeSet al. The calcium-sensing receptor: a promising target for prevention of colorectal cancer . Biochim. Biophys. Acta1853 ( 9 ), 2158 – 2167 ( 2014 ).
  • Sordillo JE , KellyR , BunyavanichSet al. Genome-wide expression profiles identify potential targets for gene-environment interactions in asthma severity . J. Allergy Clin. Immunol.136 ( 4 ), 885.e2 – 892.e2 ( 2015 ).
  • Gore C , PetersonCGB , KissenPet al. Urinary eosinophilic protein X, atopy, and symptoms suggestive of allergic disease at 3 years of age . J. Allergy Clin. Immunol.112 ( 4 ), 702 – 708 ( 2003 ).
  • Remes S , KorppiM , RemesK , SavolainenK , MononenI , PekkanenJ . Serum eosinophil cationic protein (ECP) and eosinophil protein X (EPX) in childhood asthma: the influence of atopy . Pediatr. Pulmonol.25 ( 3 ), 167 – 174 ( 1998 ).
  • Johansson Å , EnrothS , GyllenstenU . Continuous aging of the human DNA methylome throughout the human lifespan . PLoS ONE8 ( 6 ), e67378 ( 2013 ).
  • Ek WE , HedmanÅK , EnrothSet al. Genome-wide DNA methylation study identifies genes associated with the cardiovascular biomarker GDF-15 . Hum. Mol. Genet.25 ( 4 ), 817 – 827 ( 2015 ).
  • Hemani G , YangJ , VinkhuyzenAet al. Inference of the genetic architecture underlying BMI and height with the use of 20,240 sibling pairs . Am. J. Hum. Genet.93 ( 5 ), 865 – 875 ( 2013 ).

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.