Long Noncoding Rnas: Versatile Players in Biologcial Processes and Human Disorders

References

• Qi P , DuX . The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine . Mod. Pathol.26 ( 2 ), 155 – 165 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Dorn GW . LIPCAR. A mitochondrial lnc in the noncoding RNA chain?Circ. Res.114 ( 10 ), 1548 – 1550 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Clark MB , JohnstonRL , Inostroza-PontaMet al. Genome-wide analysis of long noncoding RNA stability . Genome Res.22 ( 5 ), 885 – 898 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Kumarswamy R , BautersC , VolkmannIet al. Circulating long noncoding RNA, LIPCAR, predicts survival in patients with heart failure . Circ. Res.114 ( 10 ), 1569 – 1575 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Arita T , IchikawaD , KonishiHet al. Circulating long non-coding RNAs in plasma of patients with gastric cancer . Anticancer Res.33 ( 8 ), 3185 – 3193 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Sioss JA , BhiladvalaRB , PanWet al. Nanoresonator chip-based RNA sensor strategy for detection of circulating tumor cells: response using PCA3 as a prostate cancer marker . Nanomedicine8 ( 6 ), 1017 – 1025 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Askarian-Amiri ME , CrawfordJ , FrenchJDet al. SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer . RNA17 ( 5 ), 878 – 891 ( 2011 ).
   PubMed Web of Science ®Google Scholar
• Kim K , JutooruI , ChadalapakaGet al. HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer . Oncogene32 ( 13 ), 1616 – 1625 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Geissmann F , ManzMG , JungS , SiewekeMH , MeradM , LeyK . Development of monocytes, macrophages, and dendritic cells . Science327 ( 5966 ), 656 – 661 ( 2010 ).
   PubMed Web of Science ®Google Scholar
• Wang P , XueY , HanYet al. The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation . Science344 ( 6181 ), 310 – 313 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Mueller KL . L[i]nc to dendritic cell activation . Sci. Signal7 ( 322 ), ec109 ( 2014 ).
   Google Scholar
• Carpenter S , AielloD , AtianandMKet al. A long noncoding RNA mediates both activation and repression of immune response genes . Science341 ( 6147 ), 789 – 792 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Cui H , XieN , TanZet al. The human long noncoding RNA, lnc‐IL7R, regulates inflammatory response . Eur. J. Immunol. doi:10.1002eji.201344126 ( 2014 ) (Epub ahead of print) .
   PubMedGoogle Scholar
• Li Z , ChaoT-C , ChangK-Yet al. The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL . Proc. Natl Acad. Sci. USA111 ( 3 ), 1002 – 1007 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• O’connell RM , RaoDS , ChaudhuriAA , BaltimoreD . Physiological and pathological roles for microRNAs in the immune system . Nat. Rev. Immunol.10 ( 2 ), 111 – 122 ( 2010 ).
   PubMed Web of Science ®Google Scholar
• Yoon J-H , AbdelmohsenK , GorospeM . Posttranscriptional gene regulation by long noncoding RNA . J. Mol. Biol.425 ( 19 ), 3723 – 3730 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Fitzgerald KA , CaffreyDR . Long noncoding RNAs in innate and adaptive immunity . Curr. Opin. Immunol.26 , 140 – 146 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Rinn JL , ChangHY . Genome regulation by long noncoding RNAs . Annu. Rev. Biochem.81 , 145 – 166 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Esteller M . Non-coding RNAs in human disease . Nat. Rev. Genet.12 ( 12 ), 861 – 874 ( 2011 ).
   PubMed Web of Science ®Google Scholar
• Michalik KM , YouX , ManavskiYet al. The long noncoding RNA MALAT1 regulates endothelial cell function and vessel growth . Circ. Res.114 ( 9 ), 1389 – 1397 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Watts R , JohnsenVL , ShearerJ , HittelDS . Myostatin-induced inhibition of the long noncoding RNA Malat1 is associated with decreased myogenesis . Am. J. Physiol. Cell Physiol.304 ( 10 ), C995 - C1001 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Yan B TZ , LiXm , ZhangH , YaoJ , JiangQ . Aberrant expression of long non-coding RNAs in early diabetic retinopathy . Invest. Ophthalmol. Vis. Sci.55 ( 2 ), 941 – 951 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Bernard D , PrasanthKV , TripathiVet al. A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression . EMBO J.29 ( 18 ), 3082 – 3093 ( 2010 ).
   PubMed Web of Science ®Google Scholar
• Moran VA , PereraRJ , KhalilAM . Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs . Nucleic Acids Res.40 ( 14 ), 6391 – 6400 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Qi P , DuX . The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine . Modern Pathol.26 ( 2 ), 155 – 165 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Tay Y , RinnJ , PandolfiPP . The multilayered complexity of ceRNA crosstalk and competition . Nature505 ( 7483 ), 344 – 352 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Cesana M , CacchiarelliD , LegniniIet al. A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA . Cell147 ( 2 ), 358 – 369 ( 2011 ).
   PubMed Web of Science ®Google Scholar
• Wang Y , XuZ , JiangJet al. Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal . Dev. Cell25 ( 1 ), 69 – 80 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Wang J , LiuX , WuHet al. CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer . Nucleic Acids Res.38 ( 16 ), 5366 – 5383 ( 2010 ).
   PubMed Web of Science ®Google Scholar
• Braconi C , KogureT , ValeriNet al. microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer . Oncogene30 ( 47 ), 4750 – 4756 ( 2011 ).
   PubMed Web of Science ®Google Scholar
• Liu X-H , SunM , NieF-Qet al. Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331–3p in gastric cancer . Mol. Cancer13 ( 1 ), 1 – 14 ( 2014 ).
   PubMedGoogle Scholar
• Fatica A , BozzoniI . Long non-coding RNAs: new players in cell differentiation and development . Nat. Rev. Genet.15 ( 1 ), 7 – 21 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Karreth FA , PandolfiPP . ceRNA cross-talk in cancer: when ce-bling rivalries go awry . Cancer Discov.3 ( 10 ), 1113 – 1121 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Salmena L , PolisenoL , TayY , KatsL , PandolfiPP . A ceRNA hypothesis: the rosetta stone of a hidden RNA language?Cell146 ( 3 ), 353 – 358 ( 2011 ).
   PubMed Web of Science ®Google Scholar
• Care A , CatalucciD , FelicettiFet al. MicroRNA-133 controls cardiac hypertrophy . Nat. Med.13 ( 5 ), 613 – 618 ( 2007 ).
   PubMed Web of Science ®Google Scholar
• Lin Z , MurtazaI , WangK , JiaoJ , GaoJ , LiP-F . miR-23a functions downstream of NFATc3 to regulate cardiac hypertrophy . P. Natl Acad. Sci.106 ( 29 ), 12103 – 12108 ( 2009 ).
   PubMed Web of Science ®Google Scholar
• Sayed D , HongC , ChenI-Y , LypowyJ , AbdellatifM . MicroRNAs play an essential role in the development of cardiac hypertrophy . Circ. Res.100 ( 3 ), 416 – 424 ( 2007 ).
   PubMed Web of Science ®Google Scholar
• Consortium EP . An integrated encyclopedia of DNA elements in the human genome . Nature489 ( 7414 ), 57 – 74 ( 2012 ).
   PubMed Web of Science ®Google Scholar
• Wang K , LiuF , ZhouL-Yet al. A long noncoding RNA, CHRF regulates cardiac hypertrophy by targeting miR-489 . Circ. Res.114 ( 9 ), 1377 – 1388 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Grote P , WittlerL , HendrixDet al. The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse . Dev. Cell24 ( 2 ), 206 – 214 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Klattenhoff CA , ScheuermannJC , SurfaceLEet al. Braveheart, a long noncoding RNA required for cardiovascular lineage commitment . Cell152 ( 3 ), 570 – 583 ( 2013 ).
   PubMed Web of Science ®Google Scholar
• Kumarswamy R , BautersC , VolkmannIet al. Circulating long noncoding RNA, LIPCAR, predicts survival in patients with heart failure . Circ. Res.114 ( 10 ), 1569 – 1575 ( 2014 ).
   PubMed Web of Science ®Google Scholar
• Heineke J , MolkentinJD . Regulation of cardiac hypertrophy by intracellular signalling pathways . Nat. Rev. Mol. Cell Biol.7 ( 8 ), 589 – 600 ( 2006 ).
   PubMed Web of Science ®Google Scholar
• Ponting CP , OliverPL , ReikW . Evolution and functions of long noncoding RNAs . Cell136 ( 4 ), 629 – 641 ( 2009 ).
   PubMed Web of Science ®Google Scholar