Molecular Diversity Survey on Diarrheagenic Escherichia Coli Isolates Among Children with Gastroenteritis in Fars, Iran

References

• Bonkoungou IJ , HaukkaK, OsterbladMet al. Bacterial and viral etiology of childhood diarrhea in Ouagadougou, Burkina Faso. BMC Pediatr.13(36), 1–6 (2013).
   PubMedGoogle Scholar
• CDC . Global diarrhea Burden 2019. Diarrhea: Common Illness, Global Killer. http://www.cdc.gov/healthywater/global/diarrhea-burden.html
   Google Scholar
• World Health Organization . World Health Statistics 2012.WHO Press, Geneva, Switzerland (2012).
   Google Scholar
• Matthew AC , LawRJ, ScholzR, KeeneyKM, WlodarskaM, FinlayBB. Recent advances in understanding enteric pathogenic Escherichia coli. Clin. Microbiol. Rev.26(4), 822–880 (2013).
   PubMed Web of Science ®Google Scholar
• Alikhani MY , HashemiSH, AslaniMM, FarajniaS. Prevalence and antibiotic resistance patterns of diarrheagenic E. coli isolated from adolescents and adults in hamedan, Western Iran. Iran J. Microbiol.5(1), 42–47 (2013).
   PubMedGoogle Scholar
• Alikhani M , MasoumiAH, KhairkhahM, FarajniaS, AslaniM. Phenotypic and genotypic characterization of Escherichia Coli O111serotypes. Gastroenterol. Hepatol. Bed. Bench4(1), 147–152 (2011).
   PubMedGoogle Scholar
• Gautam K , PokhrelBM, ShresthaC, BhattaDR. Prevalence of diarrheagenic E. coli (DEC) determined by polymerase chain reaction (PCR) in different tertiary care hospitals in Nepal. JSM Microbiol.3(2), 1–5 (2015).
   Google Scholar
• Kaper J , NataroJ, MobleyH. Pathogenic Escherichia coli. Nat. Rev. Microbiol.2(2), 123–140 (2004).
   PubMed Web of Science ®Google Scholar
• Croxen M , FinlayB. Molecular mechanisms of Escherichia coli pathogenicity. Nat. Rev. Microbiol8(1), 26–38 (2010).
   PubMed Web of Science ®Google Scholar
• Zamani K , EmamiA, BazarganiA, MoattariA. Phenotypic and molecular characterization of CTX-M extended-spectrum β-lactamase-producing Escherichia coli isolates in Shiraz, Iran. Rev. Soc. Bras. Med. Trop.48(4), 479–482 (2015).
   PubMed Web of Science ®Google Scholar
• Kalantar E , SoheiliF, SalimiH, DallalMMS. Frequency, antimicrobial susceptibility and plasmid profiles of Escherichia coli pathotypes obtained from children with acute diarrhea. Jundishapur J. Microbiol.4(1), 23–28 (2011).
   Web of Science ®Google Scholar
• Aslani M , AlikhaniM. Serotypes of enteropathogenic Escherichia coli isolated from children under 5 years of age. Iranian J. Publ. Health38(1), 70–77 (2009).
   Google Scholar
• Ifeanyi CI , IkenecheNF, BasseyBE, Al-GallasN, BenAissa R, BoudabousA. Diarrheagenic Escherichia coli pathotypes isolated from children with diarrhea in the Federal Capital Territory Abuja, Nigeria. J. Infect. Dev. Ctries.9(2), 165–174 (2015).
   PubMed Web of Science ®Google Scholar
• Makobe CK , SangWK, KikuviG, KariukiS. Molecular characterization of virulence factors in diarrhoeagenic Escherichia coli isolates from children in Nairobi, Kenya. JIDC6(6), 598–604 (2012).
   Google Scholar
• Russo TA , JohnsonJR. Proposal for a new inclusive designation for extraintestinal pathogenic isolates of Escherichia coli: exPEC. J. Infect. Dis.181(5), 1753–1754 (2000).
   PubMed Web of Science ®Google Scholar
• Tobias J , KassemE, RubinsteinUet al. Involvement of main diarrheagenic Escherichia coli, with emphasis on enteroaggregative E. coli, in severe non-epidemic pediatric diarrhea in a high-income country. BMC Infect. Dis.15(79), 1–7 (2015).
   PubMedGoogle Scholar
• Ramadan H , AwadA, AteyaA. Detection of phenotypes, virulence genes and phylotypes of avian pathogenic and human diarrheagenic Escherichia coli in Egypt. J. Infect. Dev. Ctries.10(6), 584–591 (2016).
   PubMed Web of Science ®Google Scholar
• Miliwebsky E , SchelottoF, VarelaG, LuzD, ChinenI, PiazzaRM. Human diarrheal infections: diagnosis of diarrheagenic Escherichia coli pathotypes. In: Escherichia coli in the Americas.TorresA (Ed.). Springer, Cham, 343–369 (2016).
   Google Scholar
• Moyo SJ , MaselleSY, MateeMI, LangelandN, MylvaganamH. Identification of diarrheagenic Escherichia coli isolated from infants and children in Dar es Salaam, Tanzania. BMC Infect. Dis.7(92), 1–8 (2007).
   Google Scholar
• Mokracka J , KoczuraR, JabłońskaL, KaznowskiA. Phylogenetic groups, virulence genes and quinolone resistance of integron-bearing Escherichia coli strains isolated from a wastewater treatment plant. Antonie van Leeuwenhoek.99(4), 817–824 (2011).
   PubMed Web of Science ®Google Scholar
• Riegler G , EspositoI. Bristol scale stool form. A still valid help in medical practice and clinical research. Tech. Coloproctol.5(3), 163–164 (2001).
   PubMedGoogle Scholar
• Kimata K , ShimaT, ShimizuM, TanakaD, IsobeJ, GyobuY. Rapid categorization of pathogenic Escherichia coli by multiplex PCR. Microbiol. Immunol.49(1), 485–492 (2005).
   PubMedGoogle Scholar
• Brandal L , LindstetdB, LenaAet al. Octaplex PCR and fluorescence based capillary electrophoresis for identification of human diarrheagenic Escherichia coli and Shigella spp. J. Microbiol. Methods68(1), 331–342 (2007).
   PubMedGoogle Scholar
• Dias R , DosSantos B, DosSantos Let al. Diarrheagenic Escherichia coli pathotypes investigation revealed atypical enteropathogenic E. coli as putative emerging diarrheal agents in children living in Botucatu, São Paulo State, Brazil. APMIS124(4), 299–308 (2016).
   PubMed Web of Science ®Google Scholar
• Hegde A , BallalM, ShenoyS. Detection of diarrheagenic Escherichia coli by multiplex PCR. Indian J. Med. Microbiol.30(3), 279–284 (2012).
   PubMed Web of Science ®Google Scholar
• Broujerdi SM , ArdakaniMR, RezatofighiSE. Characterization of diarrheagenic Escherichia coli strains associated with diarrhea in children, Khouzestan, Iran. J. Infect. Dev. Ctries.12(08), 649–656 (2018).
   PubMedGoogle Scholar
• De Champs C , ChanalC, SirotDet al. Frequency and diversity of Class A extended-spectrum β-lactamases in hospitals of the Auvergne, France: a 2 year prospective study. Antimicrob. Agents Chemother.54(3), 634–639 (2004).
   Google Scholar
• Delannoy S , BeutinL, FachP. Discrimination of enterohemorrhagic Escherichia coli (EHEC) from non-EHEC strains based on detection of various combinations of type III effector genes. J. Clin. Microbiol.51(10), 3257–3262 (2013).
   PubMed Web of Science ®Google Scholar
• Clermont O , BonacorsiS, BingenE. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol.66(10), 4555–4558 (2000).
   PubMed Web of Science ®Google Scholar
• Heuvelink A , VanDe Kar N, MeisJ, MonnensL, MelchersW. Characterization of verocytotoxin-producing Escherichia coli O157 isolates from patients with haemolytic uraemic syndrome in Western Europe. Epidemiol. Infect.115(1), 1–3 (1995).
   PubMed Web of Science ®Google Scholar
• Calundungo R , MaddauG, RappelliPet al. Escherichia coli and enteritis in Angola. Lancet344(8921), 538–539 (1994).
   PubMed Web of Science ®Google Scholar
• Arif SK , SalihLI. Identification of different categories of diarrheagenic ”Escherichia coli“ in stool samples by using multiplex PCR technique. Asian J. Med. Sci.2(5), 237–243 (2010).
   Google Scholar
• López-Saucedo C , CernaJF, Villegas-SepulvedaNet al. Single multiplex polymerase chain reaction to detect diverse loci associated with diarrheagenic Escherichia coli. Emerg. Infect. Dis.9(1), 127–131 (2003).
   PubMed Web of Science ®Google Scholar
• Gómez-Duarte OG , BaiJ, NewellE. Detection of Escherichia coli, Salmonella spp., Shigella spp., Yersinia enterocolitica, Vibrio cholerae, and Campylobacter spp. enteropathogens by 3-reaction multiplex polymerase chain reaction. Diagn. Microbiol. Infect. Dis.63(1), 1–9 (2009).
   PubMed Web of Science ®Google Scholar
• Islam MA , HeuvelinkA, DeBoer Eet al. Shiga toxin-producing Escherichia coli isolated from patients with diarrhoea in Bangladesh. J. Med. Microbiol.56(3), 380–385 (2007).
   PubMed Web of Science ®Google Scholar
• Toma C , LuY, HigaNet al. Multiplex PCR assay for identification of human diarrheagenic Escherichia coli. J. Clin. Microbiol.41(6), 2669–2671 (2003).
   PubMed Web of Science ®Google Scholar
• Bírošová E , SiegfriedL, Kmet'ovaMet al. Detection of virulence factors in α-haemolytic Escherichia coli strains isolated from various clinical materials. Clin. Microbiol. Infect.10(6), 569–573 (2004).
   PubMed Web of Science ®Google Scholar
• Johnson JR , StellAL. Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise. J. Infect. Dis.181(1), 261–272 (2000).
   PubMed Web of Science ®Google Scholar
• Wojnicz D , KucharskaAZ, Sokół-ŁętowskaA, KiciaM, Tichaczek-GoskaD. Medicinal plants extracts affect virulence factors expression and biofilm formation by the uropathogenic Escherichia coli. Urol. Res.40(6), 683–697 (2012).
   PubMedGoogle Scholar
• Bashir S , HaqueA, SarwarY, AliA, AnwarMI. Virulence profile of different phylogenetic groups of locally isolated community acquired uropathogenic E. coli from Faisalabad region of Pakistan. Ann. Clin. Microbiol. Antimicrob.11(1), 23–30 (2012).
   PubMedGoogle Scholar
• Kurbatova EV , CavanaughS, ShahNSet al. Rifampicin-resistant Mycobacterium tuberculosis: susceptibility to isoniazid and other anti-tuberculosis drugs. Int. J. Tuberc. Lung Dis.16(3), 355–357 (2012).
   PubMed Web of Science ®Google Scholar
• Proulx F , SeidmanEG, KarpmanD. Pathogenesis of Shiga toxin-associated hemolytic uremic syndrome. Pediatr. Res.50(2), 163–171 (2001).
   PubMed Web of Science ®Google Scholar
• Loo T , MonnensL, VanDer Velden Tet al. Binding and transfer of verocytotoxin by polymorphonuclear leukocytes in hemolytic uremic syndrome. Blood95(11), 3396–3402 (2000).
   PubMed Web of Science ®Google Scholar
• Hernandes R , EliasW, VieiraM, GomesT. An overview of atypical enteropathogenic Escherichia coli. FEMS Microbiol.297(2), 137–149 (2009).
   Google Scholar
• Ochoa T , MercadoE, DurandDet al. Frequency and pathotypes of diarrheagenic Escherichia coli in Peruvian children with and without diarrhea. Rev. Peru. Med. Exp. Salud.28(1), 13–20 (2011).
   PubMedGoogle Scholar
• Miri ST , DashtiA, MostaanS, KazemiF, BouzariS. Identification of different Escherichia coli pathotypes in north and north-west provinces of Iran. Iran. J. Microbiol.9(1), 33–37 (2017).
   PubMedGoogle Scholar
• Jafari A , AslaniM, BouzariS. Escherichia coli: a brief review of diarrheagenic pathotypes and their role in diarrheal diseases in Iran. Iran. J. Microbiol.4(3), 102–117 (2012).
   PubMedGoogle Scholar
• Hebbelstrup Jensen B , OlsenKEP, StruveC, KrogfeltKA, PetersenAM. Epidemiology and clinical manifestations of enteroaggregative Escherichia coli. Clin. Microbiol. Rev.27(3), 614–630 (2014).
   PubMed Web of Science ®Google Scholar
• Moori Bakhtiari N , JavadmakoeiS. Survey on biofilm production and presence of attachment factors in human uropathogenic strains of Escherichia coli. Jundishapur J. Microbiol.10(6), 1–7 (2017).
   Web of Science ®Google Scholar
• Boisen N , ScheutzF, RaskoDAet al. Genomic characterization of enteroaggregative Escherichia coli from children in Mali. J. Infect. Dis.205(3), 431–444 (2012).
   PubMed Web of Science ®Google Scholar
• Dutta S , GuinS, GhoshSet al. Trends in the prevalence of diarrheagenic Escherichia coli among hospitalized diarrheal patients in Kolkata, India. PLoS ONE8(2), e56068 (2013).
   PubMed Web of Science ®Google Scholar
• Moreno A , FilhoA, GomesTAet al. Etiology of childhood diarrhea in the northeast of Brazil: significant emergent diarrheal pathogens. Diagn. Microbiol. Infect. Dis.66(1), 50–57 (2010).
   PubMed Web of Science ®Google Scholar
• Opintan J , NewmanM, Ayeh-KumiPet al. Pediatric diarrhea in southern Ghana: etiology and association with intestinal inflammation and malnutrition. Am. J. Trop. Med. Hyg.83(4), 936–943 (2010).
   PubMed Web of Science ®Google Scholar