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Research Article

Frequency of Retrotransposon Human Endogenous Retrovirus-K113 and a Preliminary Analysis of Some Microbial Clues in Bipolar Disorder

ORCID Icon, ORCID Icon & ORCID Icon
Pages 1621-1629 | Received 02 Jul 2020, Accepted 04 Nov 2020, Published online: 20 Nov 2020

References

  • Smoller JW , FinnCT. Family, twin, and adoption studies of bipolar disorder. Am. J. Med. Genet. C Semin. Med. Genet.123C, 48–58 (2003).
  • Kerner B . Genetics of bipolar disorder. Appl. Clin. Genet.7, 33–42 (2014).
  • Li S , YangQ , HouYet al. Hypomethylation of LINE-1 elements in schizophrenia and bipolar disorder. J. Psychiatr. Res.107, 68–72 (2018).
  • McClintock B . The origin and behavior of mutable loci in maize. Proc. Natl Acad. Sci. USA.36(6), 344–355 (1950).
  • Balestrieri E , PitziantiM , MatteucciCet al. Human endogenous retroviruses and ADHD. World J. Biol. Psychiatry15(6), 499–504 (2014).
  • Mita P , BoekeJD. How retrotransposons shape genome regulation. Curr. Opin. Genet. Dev.37, 90–100 (2016).
  • Deshpande P , GuptaV , BhakeA. Methylation pattern of retrotransposons: biomarker for human cancer. J. Datta Meghe Inst. Med. Sci. Univ.13, 66–70 (2018).
  • Kannan P , BuettnerR , PrattDR , TainskyMA. Identification of a retinoic acid-inducible endogenous retroviral transcript in the human teratocarcinoma-derived cell line PA-1. J. Virol.65(11), 6343–6348 (1991).
  • Griffiths DJ . Endogenous retroviruses in the human genome sequence. Genome Biol.2(6), reviews1017.1–reviews1017.5 (2001).
  • Moyes DL , MartinA , SawcerSet al. The distribution of the endogenous retroviruses HERV-K113 and HERV-K115 in health and disease. Genomics86(3), 337–341 (2005).
  • Zwolińska K , KnyszB , GąsiorowskiJet al. Frequency of human endogenous retroviral sequences (HERV) K113 and K115 in the Polish population, and their effect on HIV infection. PLoS ONE8(10), e77820 (2013).
  • Yomara Y , BustamanteR , ChristineB , CarolineS , InesV , MartinSS. Endogenous retrovirus 3 – history, physiology, and pathology. Front. Microbiol.8, 2691 (2017).
  • de Parseval N , LazarV , CasellaJF , BenitL , HeidmannT. Survey of human genes of retroviral origin: identification and transcriptome of the genes with coding capacity for complete envelope proteins. J. Virol.77(19), 10414–10422 (2003).
  • Blaise S , de ParsevalN , BénitL , HeidmannT. Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc. Natl Acad. Sci. USA100(22), 13013–13018 (2003).
  • Chen CP , ChenLF , YangSRet al. Functional characterization of the human placental fusogenic membrane protein syncytin 2. Biol. Reprod.79(5), 815–823 (2008).
  • Malassiné A , FrendoJL , BlaiseSet al. Human endogenous retrovirus-FRD envelope protein (syncytin 2) expression in normal and trisomy 21-affected placenta. Retrovirology5, 6 (2008).
  • Otowa T , TochigiM , RogersM , UmekageT , KatoN , SasakiT. Insertional polymorphism of endogenous retrovirus HERV-K115 in schizophrenia. Neurosci. Lett.408(3), 226–229 (2006).
  • Boller K , SchönfeldK , LischerSet al. Human endogenous retrovirus HERV-K113 is capable of producing intact viral particles. J. Gen. Virol.89(Pt 2), 567–572 (2008).
  • Turner G , BarbulescuM , SuM , Jensen-SeamanMI , KiddKK , LenzJ. Insertional polymorphisms of full-length endogenous retroviruses in humans. Curr. Biol.11(19), 1531–1535 (2001).
  • Krzysztalowska-Wawrzyniak M , OstanekM , ClarkJet al. The distribution of human endogenous retrovirus K-113 in health and autoimmune diseases in Poland. Rheumatology (Oxford)50(7), 1310–1314 (2011).
  • American Psychiatric Association . Diagnostic and Statistical Manual of Mental Disorders.American Psychiatric Association, WA, USA (2000).
  • Lee D , ZoY , KimS. Nonradioactive method to study genetic profiles of natural bacterial communities by PCR–single-strand-conformation polymorphism. Appl. Environ. Microbiol.62(9), 3112–3120 (1996).
  • Schwieger F , TebbeCC. Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a non-target plant (Chenopodium album)-linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria. Appl. Environ. Microbiol.66(8), 3556–3565 (2000).
  • Schmalenberger A , TebbeCC. Bacterial diversity in maize rhizospheres: conclusions on the use of genetic profiles based on PCR-amplified partial small subunit rRNA genes in ecological studies. Mol. Ecol.12, 251–261 (2003).
  • Smalla K , Oros-SichlerM , MillingAet al. Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCR-amplified 16S rRNA gene fragments: do the different methods provide similar results. J. Microbiol. Met.69, 470–479 (2007).
  • Byun SO , FangQ , ZhouH , HickfordJGH. An effective method for silver-staining DNA in large numbers of polyacrylamide gels. Analytic. Biochem.385(1), 174–175 (2009).
  • Schwieger F , TebbeCC. A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl. Environ. Microbiol.64, 4870–4876 (1998).
  • Saha Partha S , AnW. Recently mobilised transposons in the human genome. In: eLS.JohnWiley & Sons, Ltd, Chichester, UK (2019).
  • Bundo M , ToyoshimaM , OkadaYet al. Increased L1 retrotransposition in the neuronal genome in schizophrenia. Neuron81(2), 306–313 (2014).
  • Misiak B , SzmidaE , KarpińskiP , LoskaO , SąsiadekMM , FrydeckaD. Lower LINE-1 methylation in first-episode schizophrenia patients with the history of childhood trauma. Epigenomics7(8), 1275–1285 (2015).
  • Liu S , DuT , LiuZ , ShenY , XiuJ , XuQ. Inverse changes in L1 retrotransposons between blood and brain in major depressive disorder. Sci. Rep.6, 37530 (2016).
  • Perron H , MekaouiL , BernardC , VeasF , StefasI , LeboyerM. Endogenous retrovirus Type W GAG and envelope protein antigenemia in serum of schizophrenic patients. Biol. Psychiatry64(12), 1019–1023 (2008).
  • Huang W , LiS , HuYet al. Implication of the env gene of the human endogenous retrovirus W family in the expression of BDNF and DRD3 and development of recent-onset schizophrenia. Schizophr. Bull.37(5), 988–1000 (2011).
  • Perron H , HamdaniN , FaucardRet al. Molecular characteristics of human endogenous retrovirus type-W in schizophrenia and bipolar disorder. Transl. Psychiatry2(12), e201 (2012).
  • Li F , SabunciyanS , YolkenRH , LeeD , KimS , KarlssonH. Transcription of human endogenous retroviruses in human brain by RNA-seq analysis. PLoS ONE14(1), e0207353 (2019).
  • Kim TH , JeonYJ , YiJMet al. The distribution and expression of HERV families in the human genome. Mol. Cells18(1), 87–93 (2004).
  • Dickerson F , RubalcabaE , ViscidiRet al. Polymorphisms in human endogenous retrovirus K-18 and risk of Type 2 diabetes in individuals with schizophrenia. Schizophr. Res.104(1–3), 121–126 (2008).
  • Olde Loohuis LM , MangulS , OriAPSet al. Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia. Transl. Psychiatry8(1), 96 (2018).
  • Coello K , HansenTH , SørensenNet al. Gut microbiota composition in patients with newly diagnosed bipolar disorder and their unaffected first-degree relatives. Brain Behav. Immun.75, 112–118 (2019).
  • Huang TT , LaiJB , DuYL , XuY , RuanLM , HuSH. Current understanding of gut microbiota in mood disorders: an update of human studies. Front. Genet.10, 98 (2019).
  • Evans SJ , BassisCM , HeinRet al. The gut microbiome composition associates with bipolar disorder and illness severity. J. Psychiatr. Res.87, 23–29 (2017).
  • Painold A , MörklS , KashoferKet al. A step ahead: exploring the gut microbiota in inpatients with bipolar disorder during a depressive episode. Bipolar Disord.21(1), 40–49 (2019).
  • Herrera RJ , LoweryRK , AlfonsoA , McDonaldJF , LuisJR. Ancient retroviral insertions among human populations. J. Hum. Genet.51, 353–362 (200).
  • Burmeister T , EbertAD , PritzeW , LoddenkemperC , SchwartzS , ThielE. Insertional polymorphisms of endogenous HERV-K113 and HERV-K115 retroviruses in breast cancer patients and age-matched controls.. AIDS Res. Hum. Retroviruses. 20(11), 1223–1229 (2004).

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