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Review

Genotypic Characterization Of Vibrio Cholerae Isolates Using Several DNA Fingerprint Techniques

Tushar Suvra Bhowmick1 Vibrio Phage Reference Laboratory,National Institute of Cholera and Enteric Diseases,Kolkata, India
,
Mayukh Das1 Vibrio Phage Reference Laboratory,National Institute of Cholera and Enteric Diseases,Kolkata, India
&
BL Sarkar1 Vibrio Phage Reference Laboratory,National Institute of Cholera and Enteric Diseases,Kolkata, IndiaCorrespondence[email protected]
Pages 29-42 | Published online: 16 Dec 2010

Bibliography

  • World Health Organization: Cholera: global surveillance summary, 2008. Wkly Epidemiol. Rec. 84 , 309–324 (2009).
  • Zuckerman JN , RomboL, FischA: The true burden and risk of cholera: implications for prevention and control.Lancet7 , 521–530 (2007).
  • Kaper JB , MorrisJGJr , LevineMM: Cholera.Clin. Microbiol. Rev.8 , 48–86 (1995).
  • Faruque SM , AlbertMJ, MekalanosJJ: Epidemiology, genetics, and ecology of toxigenic Vibrio cholerae.Microbiol. Mol. Biol. Rev.62 , 1301–1314 (1998).
  • Taylor RK , MillerVL, FurlongDB, MekalanosJJ: Use of phoA gene fusions to identify a pilus colonization factor coordinating regulated with cholera toxin.Proc. Natl Acad. Sci. USA84 , 2833–2837 (1987).
  • Centers for Disease Control and Prevention (CDC). Cholera outbreak – southern Sudan, 2007. MMWR Morb. Mortal. Wkly Rep. 58 , 337–341 (2009).
  • Swerdlow DL , MalengaG, BegkoyianGet al. : Epidemic cholera among refugees in Malawi, Africa: treatment and transmission.Epidemiol. Infect.118 , 207–214 (1997).
  • Barrett TJ , BlakePA: Epidemiological usefulness of changes in hemolytic activity of Vibrio cholerae biotype El Tor during the seventh pandemic.J. Clin. Microbiol.13 , 126–129 (1981).
  • Stroeher UH , KarageorgosLE, MoronaR, ManningPA: Serotype conversion in Vibrio cholerae O1.Proc. Natl Acad. Sci. USA89 , 2566–2570 (1992).
  • Rivera IG , ChowdhuryMA, HuqA, JacobsD, MartinsMT, ColwellRR: Enterobacterial repetitive intergenic consensus sequences and the PCR to generate fingerprints of genomic DNAs from Vibrio cholerae O1, O139, and non-O1 strains.Appl. Environ. Microbiol.61 , 2898–2904 (1995).
  • Sharma C , ThungapathraM, GhoshAet al. : Molecular analysis of non-O1, non-O139 Vibrio cholerae associated with an unusual upsurge in the incidence of cholera-like disease in Calcutta, India.J. Clin. Microbiol.36 , 756–763 (1998).
  • Chun J , HuqA, ColwellRR: Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus.Appl. Environ. Microbiol.65 , 2202–2208. (1999).
  • Vadivelu J , IyerL, KshatriyaBM, PuthuchearySD: Molecular evidence of clonality amongst Vibrio cholerae O1 biotype El Tor during an outbreak in Malaysia.Epidemiol. Infect.124 , 25–30 (2000).
  • Chun J , GrimCJ, HasanNAet al. : Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae.Proc. Natl Acad. Sci. USA106 , 15442–15447 (2009).
  • Tenover FC , ArbeitRD, GoeringRV: How to select and interpret molecular strain typing methods for epidemiological studies of bacterial infections: a review for healthcare epidemiologists. Molecular Typing Working Group of the Society for Healthcare Epidemiology of America.Infect. Control Hosp. Epidemiol.18 , 426–439 (1997).
  • Schwartz DC , CantorCR: Separation of yeast chromosome-sized DNAs by pulsed-field gel electrophoresis.Cell37 , 67–75 (1984).
  • Mahalingam S , CheongYM, KanS, YassinRM, VadiveluJ, PangT: Molecular epidemiologic analysis of Vibrio cholerae O1 isolates by pulsed-field gel electrophoresis.J. Clin. Microbiol.32 , 2975–2979 (1994).
  • Cameron DN , KhambatyFM, WachsmuthIK, TauxeRV, BarrettTJ: Molecular characterization of Vibrio cholerae O1 strains by pulsed-field gel electrophoresis.J. Clin. Microbiol.32 , 1685–1690 (1994).
  • Yamasaki S , NairGB, BhattacharyaSK, YamamotoS, KurazonoH, TakedaY: Cryptic appearance of a new clone of Vibrio cholerae serogroup 01 biotype El Tor in Calcutta, India.Microbiol. Immunol.41 , 1–6 (1997).
  • Kam KM , LueyCK, TsangYMet al. : Molecular subtyping of Vibrio cholerae O1 and O139 by pulsed-field gel electrophoresis in Hong Kong: correlation with epidemiological events from 1994 to 2002.J. Clin. Microbiol.41 , 4502–4511 (2003).
  • Cooper KLF , LueyCKY, BirdMet al. : Development and validation of a pulse net standardized pulsed-field gel electrophoresis protocol for subtyping of Vibrio cholerae.Foodborne Pathog. Dis.3 , 51–58 (2006).
  • Bhowmick TS , DasM, RoyN, SarkarBL: Phenotypic and molecular typing of Vibrio cholerae O1 and O139 isolates from India.J. Infect.54 , 475–482 (2007).
  • Teh CS , ChuaKH, ThongKL: Multiple-locus variable-number tandem repeat analysis of Vibrio cholerae in comparison with pulsed field gel electrophoresis and virulotyping.J. Biomed. Biotechnol.2010 , 817190 (2010).
  • Popovic T , BoppC, OlsvikO, WachsmuthK: Epidemiologic application of a standardized ribotype scheme for Vibrio cholerae O1.J. Clin. Microbiol.31 , 2474–2482 (1993).
  • Karaolis DK , LanR, ReevesPR: Molecular evolution of the seventh-pandemic clone of Vibrio cholerae and its relationship to other pandemic and epidemic V. cholerae isolates.J. Bacteriol.176 , 6199–6206 (1994).
  • Desmarchelier PM , WongFY, MallardK: An epidemiological study of Vibrio cholerae O1 in the Australian environment based on rRNA gene polymorphisms.Epidemiol. Infect.115 , 435–446 (1995).
  • Lan R , ReevesPR: Recombination between rRNA operons created most of the ribotype variation observed in the seventh pandemic clone of Vibrio cholerae.Microbiology144 , 1213–1221 (1998).
  • Dalsgaard A , ForslundA, BodhidattaLet al. : A high proportion of Vibrio cholerae strains isolated from children with diarrhoea in Bangkok, Thailand are multiple antibiotic resistant and belong to heterogenous non-O1, non-O139 O-serotypes.Epidemiol. Infect.122 , 217–226 (1999).
  • Bhanumathi R , SabeenaF, IsacSR, RadhakuttyG, SinghDV: Characterization of a toxigenic Vibrio cholerae O139 strain belonging to a new ribotype and isolated from a diarrheal patient.J. Clin. Microbiol.40 , 4779–4781 (2002).
  • Lizárraga-Partida ML , QuiliciML: Molecular analyses of Vibrio cholerae O1 clinical strains, including new nontoxigenic variants isolated in Mexico during the cholera epidemic years between 1991 and 2000.J. Clin. Microbiol.47 , 1364–1371 (2009).
  • Makino S , KurazonoT, OkuyamaY, ShimadaT, OkadaY, SasakawaC: Diversity of DNA sequences among Vibrio cholerae O139 Bengal detected by PCR-based DNA fingerprinting.FEMS Microbiol. Lett.126 , 43–48 (1995).
  • Radu S , VincentM, ApunmK, Abdul-RahimR, BenjaminPG, Yuherman Rusul G: Molecular characterization of Vibrio cholerae O1 outbreak strains in Miri, Sarawak (Malaysia). Acta Tropica83 , 169–176 (2002).
  • Sinha S , ChakrabortyR, DeKet al. : Escalating association of Vibrio cholerae O139 with cholera outbreaks in India.J. Clin. Microbiol.40 , 2635–2637 (2002).
  • Leal NC , SobreiraM, Leal-BalbinoTCet al. : Evaluation of a RAPD-based typing scheme in a molecular epidemiology study of Vibrio cholerae O1, Brazil.J. Appl. Microbiol.96 , 447–454 (2004).
  • Theophilo GND , RodriguesDP, LealNC, HofferE: Distribution of virulence markers in clinical and environmental Vibrio cholerae non-O1/non-O139 strains isolated in Brazil from 1991 to 2000.Revista do Instituto de Medicina Tropical de São Paulo48 , 65–70 (2006).
  • Bhowmick TS , DasM, SarkarBL: Evaluation of VcA VNTR as a strain-typing and phylogeny study method of Vibrio cholerae strains.Epidemiol. Infect.138 , 1637–1649 (2010).
  • Shangkuan YH , ShowYS, WangTM: Multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae and to biotype Vibrio cholerae O1.J. Appl. Bacteriol.79 , 264–273 (1995).
  • Mukhopadhyay AK , GargS, MitraRet al. : Temporal shifts in traits of Vibrio cholerae strains isolated from hospitalized patients in Calcutta: a 3-year (1993 to 1995) analysis.J. Clin. Microbiol.34 , 2537–2543 (1996).
  • De K , RamamurthyT, GhoshACet al. : Modification of the multiplex PCR for unambiguous differentiation of the El Tor and classical biotypes of Vibrio cholerae O1.Indian J. Med. Res.114 , 77–82 (2001).
  • Singh DV : Hexaplex PCR for rapid detection of virulence factors.Expert Rev. Mol. Diagn.3 , 781–784 (2003).
  • Kumar P , PeterWA, ThomasS: Rapid detection of virulence-associated genes in environmental strains of Vibrio cholerae by multiplex PCR.Curr. Microbiol.60 , 199–202 (2010).
  • Tarr CL , PatelJS, PuhrND, SowersEG, BoppCA, StrockbineNA: Identification of Vibrio isolates by a multiplex PCR assay and rpoB sequence determination.J. Clin. Microbiol.45 , 134–140 (2007).
  • Chokesajjawatee N , ZoY, ColwellRR: Determination of clonality and relatedness of Vibrio cholerae isolates by genomic fingerprinting, using long-range repetitive element sequence-based PCR.Appl. Environ. Microbiol.74 , 5392–5401 (2008).
  • Shangkuan YH , LinHC, WangTM: Diversity of DNA sequences among Vibrio cholerae O1 and non-O1 isolates detected by whole-cell repetitive element sequence-based polymerase chain reaction.J. Appl. Microbiol.82 , 335–344 (1997).
  • Castaneda NC , PichelM, OrmanB, BinszteinN, RoyPH, CentronD: Genetic characterization of Vibrio cholerae isolates from Argentina by V. cholerae repeated sequences-polymerase chain reaction.Diagn. Microbiol. Infect. Dis.53 , 175–183 (2005).
  • Tokunaga A , YamaguchiH, MoritaMet al. : Novel PCR-based genotyping method, using genomic variability between repetitive sequences of toxigenic Vibrio cholerae O1 El Tor and O139.Mol. Cell Probes24 , 99–103 (2010).
  • Ravi KA , SathishV, NairGB, NagarajuJ: Genetic characterization of Vibrio cholerae strains by inter simple sequence repeat-PCR.FEMS Microbiol. Lett.272 , 251–258 (2007).
  • Yamazaki W , SetoK, TaguchiM, IshibashiM, InoueK: Sensitive and rapid detection of cholera toxin-producing Vibrio cholerae using a loop-mediated isothermal amplification.BMC Microbiol.8 , 94 (2008).
  • Bik EM , GouwRD, MooiFR: DNA fingerprinting of Vibrio cholerae strains with a novel insertion sequence element: a tool to identify epidemic strains.J. Clin. Microbiol.34 , 1453–1461 (1996).
  • Byun R , ElbourneLD, LanR, ReevesPR: Evolutionary relationships of pathogenic clones of Vibrio cholerae by sequence analysis of four housekeeping genes.Infect. Immun.67 , 1116–1124 (1999).
  • Stine OC , SozhamannanS, GouQ, ZhengS, MorrisJGJr , JohnsonJA: Phylogeny of Vibrio cholerae based on recA sequence.Infect. Immun.68 , 7180–7185 (2000).
  • Vodopyanov SO , OleinikovIP, GoncharovEKet al. : Variable tandem repeat VcA of Vibrio cholerae.Mol. Biol. (Mosk.)36 , 1074–1079 (2002).
  • Kotetishvili M , StineOC, ChenYet al. : Multilocus sequence typing has better discriminatory ability for typing Vibrio cholerae than does pulsed-field gel electrophoresis and provides a measure of phylogenetic relatedness.J. Clin. Microbiol.41 , 2191–2196 (2003).
  • Lee JH , HanKH, ChoiSYet al. : Mozambique Cholera Vaccine Demonstration Project Coordination Group. Multilocus sequence typing (MLST) analysis of Vibrio cholerae O1 El Tor isolates from Mozambique that harbour the classical CTX prophage.J. Med. Microbiol.55 , 165–170 (2006).
  • Danin-Poleg Y , CohenLA, GanczHet al. : Vibrio cholerae strain typing and phylogeny study based on simple sequence repeats.J. Clin. Microbiol.45 , 736–746 (2007).
  • Stine OC , AlamM, TangLet al. : Seasonal cholera from multiple small outbreaks, rural Bangladesh.Emerg. Infect. Dis.14 , 831–833 (2008).
  • Ghosh R , NairGB, TangLet al. : Epidemiological study of Vibrio cholerae using variable number of tandem repeats.FEMS Microbiol. Lett.288 , 196–201 (2008).
  • Olsen JS , AarskaugT, SkoganG, FykseEM, EllingsenAB, BlatnyJM: Evaluation of a highly discriminating multiplex multi-locus variable-number of tandem-repeats (MLVA) analysis for Vibrio cholerae.J. Microbiol. Methods78 , 271–285 (2009).
  • Dalsgaard A , SerichantalergsO, EcheverriaP: Restriction fragment length polymorphisms (RFLP) of cholera toxin genes in Vibrio cholerae O139 recovered from patients in Thailand, India and Bangladesh.Scand. J. Infect. Dis.27 , 585–588 (1995).
  • Bag PK , MaitiS, SharmaCet al. : Rapid spread of the new clone of Vibrio cholerae O1 biotype El Tor in cholera endemic areas in India.Epidemiol. Infect.21 , 245–251 (1998).
  • Comstock LE , ManevalDJr , PanigrahiPet al.: The capsule and O antigen in Vibrio cholerae O139 Bengal are associated with a genetic region not present in Vibrio cholerae O1.Infect. Immun.63 , 317–323 (1995).
  • Dziejman M , BalonE, BoydD, FraserCM, HeidelbergJF, MekalanosJJ: Comparative genomic analysis of Vibrio cholerae: genes that correlate with cholera endemic and pandemic disease.Proc. Natl Acad. Sci. USA99 , 1556–1561 (2002).
  • Garg P , AydanianA, SmithD, MorrisJG, NairGB, StineOC: Molecular epidemiology of O139 Vibrio cholerae: mutation, lateral gene transfer, and founder flush.Emerg. Infect. Dis.9 , 810–814 (2003).
  • Lopez-Canovas L , BravoL, HerreraJet al. : DNA fingerprinting of Vibrio cholerae and Aeromonas species by pulsed-field minigel electrophoresis.Electrophoresis27 , 2857–2864 (2006).
  • Tracz DM , BackhousePG, OlsonABet al. : Rapid detection of Vibrio species using liquid microsphere arrays and real-time PCR targeting the ftsZ locus.J. Med. Microbiol.56 , 56–65 (2007).
  • Faruque SM , TamVC, ChowdhuryNet al. : Genomic analysis of the Mozambique strain of Vibrio cholerae O1 reveals the origin of El Tor strains carrying classical CTX prophage.Proc. Natl Acad. Sci. USA104 , 5151–5156 (2007).
  • Dalsgaard A , SkovMN, SerichantalergsO, EcheverriaP, MezaR, TaylorDN: Molecular evolution of Vibrio cholerae O1 strains isolated in Lima, Peru, from 1991 to 1995.J. Clin. Microbiol.35 , 1151–1156 (1997).
  • Shangkuan YH , TsaoCM, LinHC: Comparison of Vibrio cholerae O1 isolates by polymerase chain reaction fingerprinting and ribotyping.J. Med. Microbiol.46 , 941–948 (1997).
  • Reen FJ , BoydEF: Molecular typing of epidemic and nonepidemic Vibrio cholerae isolates and differentiation of V. cholerae and V. mimicus isolates by PCR-single-strand conformation polymorphism analysis.J. Appl. Microbiol.98 , 544–555 (2005).

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