97
Views
0
CrossRef citations to date
0
Altmetric
Research Article

A New Colorimetric Peptide Nucleic Acid-Based Assay for the Specific Detection of Bacteria

, , , , &
Pages 1131-1142 | Published online: 18 Nov 2014

References

  • Enomoto H , InoueS , MatsuhisaAet al. Development of a new in situ hybridization method for the detection of global bacterial DNA to provide early evidence of a bacterial infection in spontaneous bacterial peritonitis . J. Hepatol.56 ( 1 ), 85 – 94 ( 2012 ).
  • Kudo M , MatsuoY , NakasendoAet al. Potential clinical benefit of the in situ hybridization method for the diagnosis of sepsis . J. Infect. Chemother.15 ( 1 ), 23 – 26 ( 2009 ).
  • Bonvicini F , FilipponeC , ManaresiEet al. Peptide nucleic acid-based in situ hybridization assay for detection of parvovirus B19 nucleic acids . Clin. Chem.52 ( 6 ), 973 – 978 ( 2006 ).
  • Cerqueira L , AzevedoNF , AlmeidaC , JardimT , KeevilCW , VieiraMJ . DNA mimics for the rapid identification of microorganisms by fluorescence in situ hybridization (FISH) . Int. J. Mol. Sci.9 ( 10 ), 1944 – 1960 ( 2008 ).
  • Stender H . PNA FISH: an intelligent stain for rapid diagnosis of infectious diseases . Expert Rev. Mol. Diagn.3 ( 5 ), 649 – 655 ( 2003 ).
  • Egholm M , BuchardtO , ChristensenLet al. PNA hybridizes to complementary oligonucleotides obeying the Watson–Crick hydrogen-bonding rules . Nature365 ( 6446 ), 566 – 568 ( 1993 ).
  • Jensen KK , OrumH , NielsenPE , NordenB . Kinetics for hybridization of peptide nucleic acids (PNA) with DNA and RNA studied with the BIAcore technique . Biochemistry36 ( 16 ), 5072 – 5077 ( 1997 ).
  • Chinnery PF , TaylorRW , DiekertK , LillR , TurnbullDM , LightowlersRN . Peptide nucleic acid delivery to human mitochondria . Gene Ther.6 ( 12 ), 1919 – 1928 ( 1999 ).
  • Coester C , KreuterJ , Von BriesenH , LangerK . Preparation of avidin-labelled gelatin nanoparticles as carriers for biotinylated peptide nucleic acid (PNA) . Int. J. Pharm.196 ( 2 ), 147 – 149 ( 2000 ).
  • Langer K , CoesterC , WeberC , Von BriesenH , KreuterJ . Preparation of avidin-labeled protein nanoparticles as carriers for biotinylated peptide nucleic acid . Eur. J. Pharm. Biopharm.49 ( 3 ), 303 – 307 ( 2000 ).
  • Stams AJ , Van DijkJB , DijkemaC , PluggeCM . Growth of syntrophic propionate-oxidizing bacteria with fumarate in the absence of methanogenic bacteria . Appl. Environ. Microbiol.59 ( 4 ), 1114 – 1119 ( 1993 ).
  • Almeida C , AzevedoNF , FernandesRM , KeevilCW , VieiraMJ . Fluorescence in situ hybridization method using a peptide nucleic acid probe for identification of Salmonella spp. in a broad spectrum of samples . Appl. Environ. Microbiol.76 ( 13 ), 4476 – 4485 ( 2010 ).
  • Amann RI , KrumholzL , StahlDA . Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology . J. Bacteriol.172 ( 2 ), 762 – 770 ( 1990 ).
  • Validation of analytical procedures. Text and methodology . International Conference on Harmonization (ICH) of Technical Requirements for the Registration of Pharmaceuticals for Human Use, ICH–Q2B . http://www.ema.europa.eu/docs/en_GB/document_library/Scientific_guideline/2009/09/WC500002662.pdf .
  • Bouvier T , Del GiorgioPA . Factors influencing the detection of bacterial cells using fluorescence in situ hybridization (FISH): a quantitative review of published reports . FEMS Microbiol. Ecol.44 ( 1 ), 3 – 15 ( 2003 ).
  • Carter BS , FletcherJS , ThompsonRC . Analysis of messenger RNA expression by in situ hybridization using RNA probes synthesized via in vitro transcription . Methods52 ( 4 ), 322 – 331 ( 2010 ).
  • Stylianopoulou E , LykidisD , YpsilantisP , SimopoulosC , SkavdisG , GrigoriouM . A rapid and highly sensitive method of non-radioactive colorimetric in situ hybridization for the detection of mRNA on tissue sections . PLoS ONE7 ( 3 ), e33898 ( 2012 ).
  • Birner P , BachtiaryB , DreierBet al. Signal-amplified colorimetric in situ hybridization for assessment of human papillomavirus infection in cervical lesions . Mod. Pathol.14 ( 7 ), 702 – 709 ( 2001 ).
  • Montone KT . Differentiation of Fusarium from Aspergillus species by colorimetric in situ hybridization in formalin-fixed, paraffin-embedded tissue sections using dual fluorogenic-labeled LNA probes . Am. J. Clin. Pathol.132 ( 6 ), 866 – 870 ( 2009 ).
  • Montone KT , FeldmanMD . In situ detection of Aspergillus 18s ribosomal RNA sequences using a terminally biotinylated locked nucleic acid (LNA) probe . Diagn. Mol. Pathol.18 ( 4 ), 239 – 242 ( 2009 ).
  • Schroder S , HainM , SterflingerK . Colorimetric in situ hybridization (CISH) with digoxigenin-labeled oligonucleotide probes in autofluorescent hyphomycetes . Int. Microbiol.3 ( 3 ), 183 – 186 ( 2000 ).
  • Tanner M , GancbergD , Di LeoAet al. Chromogenic in situ hybridization: a practical alternative for fluorescence in situ hybridization to detect HER-2/neu oncogene amplification in archival breast cancer samples . Am. J. Pathol.157 ( 5 ), 1467 – 1472 ( 2000 ).
  • Cole JR , ChaiB , FarrisRJet al. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis . Nucleic Acids Res.33 , D294 – D296 ( 2005 ).
  • Ray A , NordenB . Peptide nucleic acid (PNA): its medical and biotechnical applications and promise for the future . FASEB J.14 ( 9 ), 1041 – 1060 ( 2000 ).
  • Gonzalez M , BagatolliLA , EchabeIet al. Interaction of biotin with streptavidin. Thermostability and conformational changes upon binding . J. Biol. Chem.272 ( 17 ), 11288 – 11294 ( 1997 ).
  • Bonvicini F , MirasoliM , GallinellaG , ZerbiniM , MusianiM , RodaA . PNA-based probe for quantitative chemiluminescent in situ hybridisation imaging of cellular parvovirus B19 replication kinetics . Analyst132 ( 6 ), 519 – 523 ( 2007 ).
  • Carlsson GH , NichollsP , SvistunenkoD , BerglundGI , HajduJ . Complexes of horseradish peroxidase with formate, acetate, and carbon monoxide . Biochemistry44 ( 2 ), 635 – 642 ( 2005 ).
  • St Amand AL , FrankDN , De GrooteMA , BasarabaRJ , OrmeIM , PaceNR . Use of specific rRNA oligonucleotide probes for microscopic detection of Mycobacterium tuberculosis in culture and tissue specimens . J. Clin. Microbiol.43 ( 10 ), 5369 – 5371 ( 2005 ).
  • Tate J , WardG . Interferences in immunoassay . Clin. Biochem. Rev.25 ( 2 ), 105 – 120 ( 2004 ).
  • Kubota K . CARD-FISH for environmental microorganisms: technical advancement and future applications . Microbes Environ.28 ( 1 ), 3 – 12 ( 2012 ).
  • Bidnenko E , MercierC , TremblayJ , TailliezP , KulakauskasS . Estimation of the state of the bacterial cell wall by fluorescent in situ hybridization . Appl. Environ. Microbiol.64 ( 8 ), 3059 – 3062 ( 1998 ).
  • Seltmann G , HolstO . The Bacterial Cell Wall.Springer , Berlin, Germany ( 2002 ).
  • Deckers D , VanlintD , CallewaertL , AertsenA , MichielsCW . Role of the lysozyme inhibitor Ivy in growth or survival of Escherichia coli and Pseudomonas aeruginosa bacteria in hen egg white and in human saliva and breast milk . Appl. Environ. Microbiol.74 ( 14 ), 4434 – 4439 ( 2008 ).
  • Dellinger M , GezeM , SantusRet al. Imaging of cells by autofluorescence: a new tool in the probing of biopharmaceutical effects at the intracellular level . Biotechnol. Appl. Biochem.28 ( Pt 1 ), 25 – 32 ( 1998 ).
  • Wendeberg A . Fluorescence in situ hybridization for the identification of environmental microbes . Cold Spring Harb. Protoc.2010 ( 1 ), pdb.prot5366 ( 2010 ).
  • Sekar R , PernthalerA , PernthalerJ , WarneckeF , PoschT , AmannR . An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization . Appl. Environ. Microbiol.69 ( 5 ), 2928 – 2935 ( 2003 ).
  • St Amand AL , FrankDN , De GrooteMA , PaceNR . Use of specific rRNA oligonucleotide probes for microscopic detection of Mycobacterium avium complex organisms in tissue . J. Clin. Microbiol.43 ( 4 ), 1505 – 1514 ( 2005 ).
  • Schonhuber W , FuchsB , JuretschkoS , AmannR . Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification . Appl. Environ. Microbiol.63 ( 8 ), 3268 – 3273 ( 1997 ).
  • Armbruster DA , TillmanMD , HubbsLM . Limit of detection (LQD)/limit of quantitation (LOQ): comparison of the empirical and the statistical methods exemplified with GC-MS assays of abused drugs . Clin. Chem.40 ( 7 Pt 1 ), 1233 – 1238 ( 1994 ).
  • Mansfield LP , ForsytheSJ . The detection of Salmonella using a combined immunomagnetic separation and ELISA end-detection procedure . Lett. Appl. Microbiol.31 ( 4 ), 279 – 283 ( 2000 ).
  • Padhye NV , DoyleMP . Rapid procedure for detecting enterohemorrhagic Escherichia coli O157:H7 in food . Appl. Environ. Microbiol.57 ( 9 ), 2693 – 2698 ( 1991 ).
  • Jones JB , SomodiGC , ScottJW . Increased ELISA sensitivity using a modified extraction buffer for detection of Xanthomonas campestris pv. Vesicatoria in leaf tissue . J. Appl. Microbiol.83 ( 4 ), 397 – 401 ( 1997 ).
  • Tan S , GylesCL , WilkieBN . Comparison of an LPS-specific competitive ELISA with a motility enrichment culture method (MSRV) for detection of Salmonella typhimurium and S. enteritidis in chickens . Vet. Microbiol.56 ( 1–2 ), 79 – 86 ( 1997 ).
  • Almeida C , AzevedoNF , IversenC , FanningS , KeevilCW , VieiraMJ . Development and application of a novel peptide nucleic acid probe for the specific detection of Cronobacter genomospecies (Enterobacter sakazakii) in powdered infant formula . Appl. Environ. Microbiol.75 ( 9 ), 2925 – 2930 ( 2009 ).
  • Peleg AY , TilahunY , FiandacaMJet al. Utility of peptide nucleic acid fluorescence in situ hybridization for rapid detection of Acinetobacter spp. and Pseudomonas aeruginosa . J. Clin. Microbiol.47 ( 3 ), 830 – 832 ( 2009 ).
  • Selvaraju SB , KapoorR , YadavJS . Peptide nucleic acid-fluorescence in situ hybridization (PNA-FISH) assay for specific detection of Mycobacterium immunogenum and DNA-FISH assay for analysis of pseudomonads in metal working fluids and sputum . Mol. Cell. Probes22 ( 5–6 ), 273 – 280 ( 2008 ).
  • Ponsard I , SoumillionP . New immunoenzymatic strategy for rapid and selective growth of Salmonella . J. Clin. Microbiol.50 ( 12 ), 4138 – 4140 ( 2012 ).

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.