Relationship between SNPs and expression level for candidate genes in rheumatoid arthritis

References

• Seldin MF, Amos CI, Ward R, Gregersen PK. The genetics revolution and the assault on rheumatoid arthritis. Arthritis Rheum 1999;42:1071–9.
   PubMed Web of Science ®Google Scholar
• Pope RM. Apoptosis as a therapeutic tool in rheumatoid arthritis. Nat Rev Immunol 2002;2:527–35.
   PubMed Web of Science ®Google Scholar
• Zhang Y, Qiu H, Zhang H, Wang L, Zhuang C, Liu R. Vascular endothelial growth factor A (VEGFA) polymorphisms in Chinese patients with rheumatoid arthritis. Scand J Rheumatol 2013;42:344–8.
   PubMed Web of Science ®Google Scholar
• Cáliz R, del Amo J, Balsa A, Blanco F, Silva L, Sanmarti R, et al. The C677T polymorphism in the MTHFR gene is associated with the toxicity of methotrexate in a Spanish rheumatoid arthritis population. Scand J Rheumatol 2012;41:10–14.
   PubMed Web of Science ®Google Scholar
• Teixeira VH, Olaso R, Martin-Magniette M-L, Lasbleiz S, Jacq L, Oliveira CR, et al. Transcriptome analysis describing new immunity and defense genes in peripheral blood mononuclear cells of rheumatoid arthritis patients. PLoS One 2009;4:e6803.
   PubMed Web of Science ®Google Scholar
• Toonen EJ, Barrera P, Radstake TR, van Riel PL, Scheffer H, Franke B, et al. Gene expression profiling in rheumatoid arthritis: current concepts and future directions. Ann Rheum Dis 2008;67:1663–9.
   PubMed Web of Science ®Google Scholar
• van der Pouw Kraan TC, Wijbrandts CA, van Baarsen LG, Voskuyl AE, Rustenburg F, Baggen JM, et al. Rheumatoid arthritis subtypes identified by genomic profiling of peripheral blood cells: assignment of a type I interferon signature in a subpopulation of patients. Ann Rheum Dis 2007;66:1008–14.
   PubMed Web of Science ®Google Scholar
• Baechler EC, Batliwalla FM, Reed AM, Peterson EJ, Gaffney PM, Moser KL, et al. Gene expression profiling in human autoimmunity. Immunol Rev 2006;210:120–37.
   PubMed Web of Science ®Google Scholar
• Stahl EA, Raychaudhuri S, Remmers EF, Xie G, Eyre S, Thomson BP, et al. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. Nat Genet 2010;42:508–14.
   PubMed Web of Science ®Google Scholar
• Barton A, Thomson W, Ke X, Eyre S, Hinks A, Bowes J, et al. Re-evaluation of putative rheumatoid arthritis susceptibility genes in the post-genome wide association study era and hypothesis of a key pathway underlying susceptibility. Hum Mol Genet 2008;17:2274–9.
   PubMed Web of Science ®Google Scholar
• Michou L, Croiseau P, Petit-Teixeira E, du Montcel ST, Lemaire I, Pierlot C, et al. Validation of the reshaped shared epitope HLA-DRB1 classification in rheumatoid arthritis. Arthritis Res Ther 2006;28;8:R79.
   Google Scholar
• Arnett FC, Edworthy SM, Bloch DA, McShane DJ, Fries JF, Cooper NS, et al. The American Rheumatism Association 1987 revised criteria for the classification of rheumatoid arthritis. Arthritis Rheum 1988;31:315–24.
   PubMed Web of Science ®Google Scholar
• Sambrook P, Fritsch E, Maniatis T, editors. A laboratory manual, vol. 1, 2nd edn. New York: Cold Spring Harbor Laboratory Press, 1989.
   Google Scholar
• Botstein D, White RL, Skolnick M, Davis RW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 1980;32:314–31.
   PubMed Web of Science ®Google Scholar
• Spielman RS, McGinnis RE, Ewens WJ. Transmission test for linkage disequilibrium: the insulin gene region and insulin dependent diabetes mellitus (IDDM). Am J Hum Genet 1993;52:506–16.
   PubMed Web of Science ®Google Scholar
• Lathrop GM. Estimating genotype relative risks. Tissue Antigens 1983;22:160–6.
   PubMedGoogle Scholar
• Lake SL, Blacker D, Laird NM. Family-based tests of association in the presence of linkage. Am J Hum Genet 2000;67:1515–25.
   PubMed Web of Science ®Google Scholar
• Zeller T, Wild P, Szymczak S, Rotival M, Schillert A, Castagne R, et al. Genetics and beyond – the transcriptome of human monocytes and disease susceptibility. PLoS One 2010;5:e10693.
   PubMed Web of Science ®Google Scholar
• Maxwell JR, Gowers IR, Kuet KP, Barton A, Worthington J, Wilson AG. Expression of the autoimmunity associated TNFAIP3 is increased in rheumatoid arthritis but does not differ according to genotype at 6q23. Rheumatology 2012;51:1514–15.
   PubMed Web of Science ®Google Scholar
• Teixeira VH, Jacq L, Lasbleiz S, Hilliquin P, Oliveira CR, Cornelis F, et al. Genetic and expression analysis of CASP7 gene in a European Caucasian population with rheumatoid arthritis. J Rheumatol 2008;35:1912–18.
   PubMed Web of Science ®Google Scholar
• Muñoz-Valle JF, Ruiz-Quezada SL, Oregón-Romero E, Navarro-Hernández RE, Castañeda-Saucedo E, De la Cruz-Mosso U, et al. PAI-1 mRNA expression and plasma level in rheumatoid arthritis: relationship with 4G/5G PAI-1 polymorphism. Rheumatol Int 2012;32:3951–6.
   PubMed Web of Science ®Google Scholar
• Myouzen K, Kochi Y, Okada Y, Terao C, Suzuki A, Ikari K, et al. Functional variants in NFKBIE and RTKN2 involved in activation of the NF-KB pathway are associated with rheumatoid arthritis in Japanese. PLoS Genet 2012;8:e1002949.
   Web of Science ®Google Scholar
• Yang D, Rosenberg HF, Chen Q, Dyer KD, Kurosaka K, Oppenheim JJ. Eosinophil-derived neurotoxin (EDN), an antimicrobial protein with chemotactic activities for dendritic cells. Blood 2003;102:3396–403.
   PubMed Web of Science ®Google Scholar
• Chatzikyriakidou A, Voulgari PV, Georgiou I, Drosos AA. Altered sequence of the ETS1 transcription factor may predispose to rheumatoid arthritis susceptibility. Scand J Rheumatol 2013; 42:11–14.
   PubMed Web of Science ®Google Scholar
• Lu X, Wang M, Qi J, Wang H, Li X, Gupta D, et al. Peptidoglycan recognition proteins are a new class of human bactericidal proteins. J Biol Chem 2006;281:5895–7.
   PubMed Web of Science ®Google Scholar
• Royet J, Dziarski R. Peptidoglycan recognition proteins: pleiotropic sensors and effectors of antimicrobial defenses. Nat Microbiol Rev 2007;5:264–77.
   PubMed Web of Science ®Google Scholar
• Dziarski R, Gupta D. Mammalian peptidoglycan recognition proteins (PGRPs) in innate immunity. Innate Immunity 2010; 16:168–74.
   PubMed Web of Science ®Google Scholar
• Rohatgi A, Ayers CR, Khera A, Mc Guire DK, Das SR, Matulevicius S, et al. The association between peptidoglycan recognition protein-1 and coronary and peripheral atherosclerosis: observations from the Dallas Heart Study. Atherosclerosis 2009;203:569–75.
   PubMed Web of Science ®Google Scholar
• Témoin S, Chakaki A, Askari A, El-Halaby A, Fitzgerald S, Marcus RE, et al. Identification of oral bacterial DNA in synovial fluid of patients with arthritis with native and failed prosthetic joints. J Clin Rheumatol 2012;18:117–21.
   PubMed Web of Science ®Google Scholar
• Hitchon CA, El-Gabalawy HS. Infection and rheumatoid arthritis: still an open question. Curr Opin Rheumatol 2011;23:352–7.
   PubMed Web of Science ®Google Scholar