The paternal perspective of the Slovenian population and its relationship with other populations

References

• Balaresque P, Bowden GR, Adams SM, Leung HY, King TE, Rosser ZH, Goodwin J, et al. 2010. A predominantly neolithic origin for European paternal lineages. PLoS Biol 8:e1000285 (1–9)
   Google Scholar
• Barać L, Peričić M, Klarić IM, Janićijević B, Parik J, Rootsi S, Rudan P. 2003. Y chromosome STRs in Croatians. Forensic Sci Int 138:127–133
   PubMedGoogle Scholar
• Barford PM. 2001. The Early Slavs. New York: Cornell University Press
   Google Scholar
• Battaglia V, Fornarino S, Al-Zahery N, Olivieri A, Pala M, Myres NM, King RJ, et al. 2009. Y-chromosomal evidence of the cultural diffusion of agriculture in Southeast Europe. Eur J Hum Genet 17:820–830
   PubMed Web of Science ®Google Scholar
• Berger B, Lindinger A, Niederstatter H, Grubwieser P, and Parson W. 2005. Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay. Int J Legal Med 119:241–246
   PubMed Web of Science ®Google Scholar
• Bezlaj F. 1967. Eseji o slovenskem jeziku. Ljubljana, Slovenia: Mladinska knjiga
   Google Scholar
• Bosch E, Calafell F, Gonzalez-Neira A, Flaiz C, Mateu E, Scheil HG, Huckenbeck W, et al. 2006. Paternal and maternal lineages in the Balkans show a homogeneous landscape over linguistic barriers, except for the isolated Aromuns. Ann Hum Genet 70:459–487
   PubMed Web of Science ®Google Scholar
• Cavalli-Sfortza LL. 1994. The history and geography of human genes. Princeton, NJ: Princeton University Press
   Google Scholar
• Cinnioglu C, King R, Kivisild T, Kalfoglu E, Atasoy S, Cavalleri GL, Lillie AS, et al. 2004. Excavating Y-chromosome haplotype strata in Anatolia. Hum Genet 114:127–148
   PubMed Web of Science ®Google Scholar
• Cruciani F, Santolamazza P, Shen P, Macaulay V, Moral P, Olckers A, Modiano D, et al. 2002. A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes. Am J Hum Genet 70:1197–1214
   PubMed Web of Science ®Google Scholar
• Derenko M, Malyarchuk B, Denisova G, Wozniak M, Grzybowski T, Dambueva I, Zakharov I. 2007. Y-chromosome haplogroup N dispersals from south Siberia to Europe. J Hum Genet 52:763–770
   PubMed Web of Science ®Google Scholar
• Derenko M, Malyarchuk B, Denisova GA, Wozniak M, Dambueva I, Dorzhu C, Luzina F, et al. 2006. Contrasting patterns of Y-chromosome variation in South Siberian populations from Baikal and Altai-Sayan regions. Hum Genet 118:591–604
   PubMedGoogle Scholar
• Excoffier l, Lischer HEL. 2010. Arlequin suite ver. 3.5: a new series of programs to perform population genetic analyses under Linux and Windows. Mol Ecol Resour 10:564–567
   PubMed Web of Science ®Google Scholar
• Felsenstein J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Seattle, WA: Department of Genetics, University of Washington
   Google Scholar
• Grafenauer B. 1950. Nekaj vprašanj iz dobe naseljevanja južnih Slovanov. Ljubljana, Slovenia: Zgodovinski časopis
   Google Scholar
• Hammer MF, Horai S. 1995. Y chromosomal DNA variation and the peopling of Japan. Am J Hum Genet 56:951–962
   PubMed Web of Science ®Google Scholar
• Hammer MF, Karafet T, Rasanayagam A, Wood ET, Altheide TK, Jenkins T, Griffiths RC, et al. 1998. Out of Africa and back again: nested cladistic analysis of human Y chromosome variation. Mol Biol Evol 15:427–441
   PubMed Web of Science ®Google Scholar
• Hammer MF, Redd AJ, Wood ET, Bonner MR, Jarjanazi H, Karafet T, Santachiara-Benerecetti S, et al. 2000. Jewish and Middle Eastern non-Jewish populations share a common pool of Y-chromosome biallelic haplotypes. Proc Natl Acad Sci USA 97:6769–6774
   PubMed Web of Science ®Google Scholar
• Jakovski Z, Nikolova K, Jankova-Ajanovska R, Marjanović D, Pojskic N, Janeska B. 2011. Genetic data for 17 Y-chromosomal STR loci in Macedonians in the Republic of Macedonia. Forensic Sci Int Genet 5:e108–e111
   PubMed Web of Science ®Google Scholar
• Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF. 2008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res 18:830–838
   PubMed Web of Science ®Google Scholar
• Klarić IM, Lauc LB, Peričić M, Janičijević B, Terzic R, Colak I, Kvesić A, Rudan P. 2005. Evaluation of Y-STR variation in Bosnian and Herzegovinian population. Forensic Sci Int 154:252–256
   PubMedGoogle Scholar
• Li CC. 1976. First course in population genetics. Pacific Grove, CA: Boxwood Press
   Google Scholar
• Malyarchuk BA, Grzybowski T, Derenko MV, Czarny J, Drobnic K, Miscicka-Sliwka D. 2003. Mitochondrial DNA variability in Bosnians and Slovenians. Ann Hum Genet 67:412–425
   PubMed Web of Science ®Google Scholar
• Malyarchuk BA, Perkova MA, Derenko MV, Vanecek T, Lazur J, Gomolcak P. 2008. Mitochondrial DNA variability in Slovaks, with application to the Roma origin. Ann Hum Genet 72:228–240
   PubMed Web of Science ®Google Scholar
• Manni F, Guerard E, Heyer E. 2004. Geographic patterns of (genetic, morphologic, linguistic) variation: how barriers can be detected by using Monmonier's algorithm. Hum Biol 76:173–190
   PubMed Web of Science ®Google Scholar
• Marjanović D, Fornarino S, Montagna S, Primorac D, Hadžiselimović R, Vidović S, Pojskić N, et al. 2005. The peopling of modern Bosnia-Herzegovina: Y-chromosome haplogroups in the three main ethnic groups. Ann Hum Genet 69:757–763
   PubMed Web of Science ®Google Scholar
• Martinez-Cruz B, Ioana M, Calafell F, Arauna LR, Sanz P, Ionescu R, Boengiu S, et al.; Genographic Consortium. 2012. Y-chromosome analysis in individuals bearing the Basarab name of the first dynasty of Wallachian kings. PLos One 7:e41083 (1–6)
   Google Scholar
• Miller SA, Dykes DD, Polesky HF. 1988. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16:1215
   PubMed Web of Science ®Google Scholar
• Mirabal S, Varljen T, Gayden T, Regueiro M, Vujović S, Popović D, Djurić M, et al. 2010. Human-chromosome short tandem repeats: a tale of acculturation and migrations as mechanisms for the diffusion of agriculture in the Balkan Peninsula. Am J Phys Anthropol 142:380–390
   PubMed Web of Science ®Google Scholar
• Myres NM, Rootsi S, Lin AA, Jarve M, King RJ, Kutuev I, Cabrera VM, et al. 2010. A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe. Eur J Hum Genet 19:95–101
   PubMedGoogle Scholar
• Niederstätter H, Rampl G, Erhart D, Pitterl F, Oberacher H, Neuhuber F, Hausner I, et al. 2012. Pasture names with romance and Slavic roots facilitate dissection of Y chromosome variation in an exclusively German-speaking Alpine Region. Plos One 7:e41885 (1–13)
   Google Scholar
• Park SDE. 2012. Trypanotolerance in West African cattle and the population genetic effects of selection. Dublin, Ireland: University of Dublin
   Google Scholar
• Peričić M, Lauc LB, Klarić IM, Rootsi S, Janičijević B, Rudan I, Terzić R, et al. 2005. High-resolution phylogenetic analysis of south eastern Europe traces major episodes of paternal gene flow among Slavic populations. Mol Biol Evol 22:1964–1975
   PubMed Web of Science ®Google Scholar
• Rebala K, Mikulich AI, Tsybovsky IS, Sivakova D, Dzupinkova Z, Szczerkowska-Dobosz A, Szczerkowska Z. 2007. Y-STR variation among Slavs: evidence for the Slavic homeland in the middle Dnieper basin. J Hum Genet 52:406–414
   PubMed Web of Science ®Google Scholar
• Roewer L, Croucher PJ, Willuweit S, Lu TT, Kayser M, Lessig R, de KP, et al. 2005. Signature of recent historical events in the European Y-chromosomal STR haplotype distribution. Hum Genet 116:279–291
   PubMed Web of Science ®Google Scholar
• Roewer L, Willuweit S, Kruger C, Nagy M, Rychkov S, Morozowa I, Naumova O, et al. 2008. Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations. Int J Legal Med 122:219–223
   PubMed Web of Science ®Google Scholar
• Rootsi S, Magri C, Kivisild T, Benuzzi G, Help H, Bermisheva M, Kutuev I, et al. 2004. Phylogeography of Y-chromosome haplogroup I reveals distinct domains of prehistoric gene flow in Europe. Am J Hum Genet 75:128–137
   PubMed Web of Science ®Google Scholar
• Rosser ZH, Zerjal T, Hurles ME, Adojaan M, Alavantic D, Amorim A, Amos W, et al. 2000. Y-chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language. Am J Hum Genet 67:1526–1543
   PubMed Web of Science ®Google Scholar
• Schenker AM. 1995. The dawn of Slavic: an introduction to Slavic philology. New Haven, CT: Yale University Press
   Google Scholar
• Semino O, Passarino G, Oefner PJ, Lin AA, Arbuzova S, Beckman LE, De BG, et al. 2000. The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective. Science 290:1155–1159
   PubMed Web of Science ®Google Scholar
• Sengupta S, Zhivotovsky LA, King R, Mehdi SQ, Edmonds CA, Chow CE, Lin AA, et al. 2006. Polarity and temporality of high-resolution Y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists. Am J Hum Genet 78:202–221
   PubMed Web of Science ®Google Scholar
• Štih P, Simoniti V, Vodopivec P. 2008. Slovenska zgodovina. Ljubljana, Slovenia: Inštitut za novejšo zgodovino
   Google Scholar
• Turrina S, Atzei R, De LD. 2006. Y-chromosomal STR haplotypes in a Northeast Italian population sample using 17plex loci PCR assay. Int J Legal Med 120:56–59
   PubMedGoogle Scholar
• Underhill PA, Jin L, Lin AA, Mehdi SQ, Jenkins T, Vollrath D, Davis RW, et al. 1997. Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography. Genome Res 7:996–1005
   PubMed Web of Science ®Google Scholar
• Underhill PA, Myres NM, Rootsi S, Chow CET, Lin AA, Otillar RP, King R, et al. 2007. New phylogenetic relationships for Y-chromosome haplogroup I: reappraising its phylogeography and prehistory phylogeography and prehistory. In: Mellars P, Boyle K, Bar-Yosef O, Stringer C, editors. Rethinking the human revolution. Cambridge, UK: McDonald Institute Monographs. p 33–42
   Google Scholar
• Underhill PA, Myres NM, Rootsi S, Metspalu M, Zhivotovsky LA, King RJ, Lin AA, et al. 2010. Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a. Eur J Hum Genet 18:479–484
   PubMed Web of Science ®Google Scholar
• Underhill PA, Passarino G, Lin AA, Shen P, Mirazon LM, Foley RA, Oefner PJ, Cavalli-Sforza LL. 2001. The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Ann Hum Genet 65:43–62
   PubMed Web of Science ®Google Scholar
• Völgyi A, Zalan A, Szvetnik E, Pamjav H. 2009. Hungarian population data for 11 Y-STR and 49 Y-SNP markers. Forensic Sci Int Genet 3:e27–e28
   PubMed Web of Science ®Google Scholar
• Wells RS, Yuldasheva N, Ruzibakiev R, Underhill PA, Evseeva I, Blue-Smith J, Jin L, et al. 2001. The Eurasian heartland: a continental perspective on Y-chromosome diversity. Proc Natl Acad Sci USA 98:10244–10249
   PubMed Web of Science ®Google Scholar
• Wilder JA, Kingan SB, Mobasher Z, Pilkington MM, Hammer MF. 2004. Global patterns of human mitochondrial DNA and Y-chromosome structure are not influenced by higher migration rates of females versus males. Nat Genet 36:1122–1125
   PubMed Web of Science ®Google Scholar
• Wozniak M, Grzybowski T, Starzynski J, Marciniak T. 2007. Continuity of Y chromosome haplotypes in the population of Southern Poland before and after the Second World War. Forensic Sci Int Genet 1:134–140
   PubMedGoogle Scholar
• Wozniak M, Malyarchuk B, Derenko M, Vanecek T, Lazur J, Gomolcak P, Grzybowski T. 2010. Similarities and distinctions in Y chromosome gene pool of Western Slavs. Am J Phys Anthropol 142:540–548
   PubMed Web of Science ®Google Scholar
• YCC. 2002. A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res 12:339–348
   PubMed Web of Science ®Google Scholar
• Zaharova B, Andonova S, Gilissen A, Cassiman JJ, Decorte R, Kremensky I. 2001. Y-chromosomal STR haplotypes in three major population groups in Bulgaria. Forensic Sci Int 124:182–186
   PubMedGoogle Scholar
• Zhivotovsky LA, Rosenberg NA, Feldman MW. 2003. Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers. Am J Hum Genet 72:1171–1186
   PubMedGoogle Scholar
• Zhivotovsky LA, Underhill PA, Cinnioglu C, Kayser M, Morar B, Kivisild T, Scozzari R, et al. 2004. The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time. Am J Hum Genet 74:50–61
   PubMed Web of Science ®Google Scholar
• Žužek A. 2007. Naselitev Slovanov v vzhodnoalpski prostor. Ljubljana, Slovenia: Zgodovinski časopis
   Google Scholar