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Research Article

A qualitative description of the peptide sharing between poliovirus and Homo sapiens

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Pages 779-785 | Received 06 Dec 2011, Accepted 24 Dec 2011, Published online: 03 Feb 2012

References

  • Schwamborn, K., Gaisa, N.T., Henkel, C. Tissue and serum proteomic profiling for diagnostic and prognostic bladder cancer biomarkers. Expert Rev Proteomics 2010, 7, 897–906.
  • Lutz, N.W., Cozzone, P.J. Metabolic profiling in multiple sclerosis and other disorders by quantitative analysis of cerebrospinal fluid using nuclear magnetic resonance spectroscopy. Curr Pharm Biotechnol 2011, 12, 1016–1025.
  • Caputo, E., Lombardi, M.L., Luongo, V., Moharram, R., Tornatore, P., Pirozzi, G., Guardiola, J., Martin, B.M. Peptide profiling in epithelial tumor plasma by the emerging proteomic techniques. J Chromatogr B Analyt Technol Biomed Life Sci 2005, 819, 59–66.
  • Okerberg, E.S., Wu, J., Zhang, B., Samii, B., Blackford, K., Winn, D.T., Shreder, K.R., Burbaum, J.J., Patricelli, M.P. High-resolution functional proteomics by active-site peptide profiling. Proc Natl Acad Sci USA 2005, 102, 4996–5001.
  • Kanduc, D. The self/nonself issue: A confrontation between proteomes. Self Nonself 2010, 1, 255–258.
  • Kanduc, D., Stufano, A., Lucchese, G., Kusalik, A. Massive peptide sharing between viral and human proteomes. Peptides 2008, 29, 1755–1766.
  • Trost, B., Kusalik, A., Lucchese, G., Kanduc, D. Bacterial peptides are intensively present throughout the human proteome. Self Nonself 2010, 1, 71–74.
  • Bavaro, S.L., Calabrò, M., Kanduc, D. Pentapeptide sharing between Corynebacterium diphtheria toxin and the human neural protein network. Immunopharmacol Immunotoxicol 2011, 33, 360–372.
  • Lucchese, G., Stufano, A., Kanduc, D. Proteome-guided search for influenza A B-cell epitopes. FEMS Immunol Med Microbiol 2009, 57, 88–92.
  • Stufano, A., Capone, G., Pesetti, B., Polimeno, L., Kanduc, D. Clustering of rare peptide segments in the HCV immunome. Self Nonself 2010, 1, 154–162.
  • Lucchese, G., Stufano, A., Kanduc, D. Proposing low-similarity peptide vaccines against Mycobacterium tuberculosis. J Biomed Biotechnol 2010, 2010, 832341.
  • Kusalik, A., Bickis, M., Lewis, C., Li, Y., Lucchese, G., Marincola, F.M., Kanduc, D. Widespread and ample peptide overlapping between HCV and Homo sapiens proteomes. Peptides 2007, 28, 1260–1267.
  • Kanduc, D. Describing the hexapeptide identity platform between the influenza A H5N1 and Homo sapiens proteomes. Biologics 2010, 4, 245–261.
  • Trost, G., Stufano, A., Bickis, M., Kusalik, A., Kanduc, D. No human protein is exempt from bacterial motifs, not even one. Self Nonself 2010, 1, 328–334.
  • Lucchese, G., Stufano, A., Calabrò, M., Kanduc, D. Charting the peptide crossreactome between HIV-1 and the human proteome. Front Biosci (Elite Ed) 2011, 3, 1385–1400.
  • Lucchese, G. Confronting JC virusand Homo sapiens biological signatures. Front Biosci 2012 (InPress).
  • Kanduc, D. Peptide cross-reactivity: the original sin of vaccines Front Biosci 2012 (In Press).
  • Lucchese, G., Stufano, A., Kanduc, D. Searching for an effective, safe and universal anti-HIV vaccine: finding the answer in just one short peptide. Self Nonself 2011, 2, 49–54.
  • Fasano, C., Kanduc, D. Selfness-nonselfness in designing an anti-B19 erythrovirus vaccine. Self Nonself 2011, 2, 114–119.
  • Lucchese, G., Pesce Delfino, A. Using proteomics to develop an anti-Campylobacter jejuni vaccine. Immunopharmacol Immunotoxicol 2012 (In Press).
  • Nathanson, N. The pathogenesis of poliomyelitis: what we don’t know. Adv Virus Res 2008, 71, 1–50.
  • Goodsell, D.S. The machinery of life. New York: Copernicus, 1998.
  • Racaniello, V.R. One hundred years of poliovirus pathogenesis. Virology 2006, 344, 9–16.
  • Pohl, D., Rostasy, K., Jacobi, C., Lange, P., Nau, R., Krone, B., Hanefeld, F. Intrathecal antibody production against Epstein-Barr and other neurotropic viruses in pediatric and adult onset multiple sclerosis. J Neurol 2010, 257, 212–216.
  • Steiner, I., Kennedy, P.G., Pachner, A.R. The neurotropic herpes viruses: herpes simplex and varicella-zoster. Lancet Neurol 2007, 6, 1015–1028.
  • Alberman, E., Peckham, C. Cerebral palsy and perinatal exposure to neurotropic viruses. BMJ 2006, 332, 63–64.
  • Buccellato, M.A., Carsillo, T., Traylor, Z., Oglesbee, M. Heat shock protein expression in brain: a protective role spanning intrinsic thermal resistance and defense against neurotropic viruses. Prog Brain Res 2007, 162, 395–415.
  • Novello, G., Capone, G., Fasano, C., Bavaro, S.L., Polito, A.N., Kanduc, D. A quantitative description of the peptide sharing between poliovirus and Homo sapiens. Immunopharmacol Immunotoxicol 2011. DOI : 10.3109/08923973.2011.608360.
  • Kim, S.H., Park, I.H., Lee, S.C., Lee, Y.S., Zhou-Yi, Kim, C.M., Ahn, S.C., Choi, Y.L. Discovery of three novel lipase (lipA1, lipA2, and lipA3) and lipase-specific chaperone (lipB) genes present in Acinetobacter sp. DYL129. Appl Microbiol Biotechnol 2008, 77, 1041–1051.
  • Berezovski, M., Li, W.P., Poulter, C.D., Krylov, S.N. Measuring the activity of farnesyltransferase by capillary electrophoresis with laser-induced fluorescence detection. Electrophoresis 2002, 23, 3398–3403.
  • Ma, T., Wang, Z., Guo, Y., Pei, D. The C-terminal pentapeptide of Nanog tryptophan repeat domain interacts with Nac1 and regulates stem cell proliferation but not pluripotency. J Biol Chem 2009, 284, 16071–16081.
  • Kanduc, D. Translational regulation of human papillomavirus type 16 E7 mRNA by the peptide SEQIKA, shared by rabbit α(1)-globin and human cytokeratin 7. J Virol 2002, 76, 7040–7048.
  • Lucchese, A., Serpico, R., Guida, A., Crincoli, V., Scully, C., Kanduc, D. Interkeratin peptide-protein interactions that promote HPV16 E7 gene expression. Int J Immunopathol Pharmacol 2010, 23, 857–864.
  • Augustine, C.K., Yoshimoto, Y., Gupta, M., Zipfel, P.A., Selim, M.A., Febbo, P., Pendergast, A.M., Peters, W.P., Tyler, D.S. Targeting N-cadherin enhances antitumor activity of cytotoxic therapies in melanoma treatment. Cancer Res 2008, 68, 3777–3784.
  • de Groot, P.W., Klis, F.M. The conserved PA14 domain of cell wall-associated fungal adhesins governs their glycan-binding specificity. Mol Microbiol 2008, 68, 535–537.
  • Drobni, M., Li, T., Krüger, C., Loimaranta, V., Kilian, M., Hammarström, L., Jörnvall, H., Bergman, T., Strömberg, N. Host-derived pentapeptide affecting adhesion, proliferation, and local pH in biofilm communities composed of Streptococcus and Actinomyces species. Infect Immun 2006, 74, 6293–6299.
  • Kanduc, D. “Self-nonself” peptides in the design of vaccines. Curr Pharm Des 2009, 15, 3283–3289.
  • Kanduc, D. Immunogenicity in peptide-immunotherapy: from self/nonself to similar/dissimilar sequences. Adv Exp Med Biol 2008, 640, 198–207.
  • Kanduc, D., Lucchese, A., Mittelman, A. Non-redundant peptidomes from DAPs: towards “the vaccine”? Autoimmun Rev 2007, 6, 290–294.
  • Kanduc, D. Peptimmunology: immunogenic peptides and sequence redundancy. Curr Drug Discov Technol 2005, 2, 239–244.
  • Tiwari, R., Geliebter, J., Lucchese, A., Mittelman, A., Kanduc, D. Computational peptide dissection of Melan-a/MART-1 oncoprotein antigenicity. Peptides 2004, 25, 1865–1871.
  • Lucchese, G., Stufano, A., Trost, B., Kusalik, A., Kanduc, D. Peptidology: short amino acid modules in cell biology and immunology. Amino Acids 2007, 33, 703–707.
  • Kanduc, D. Protein information content resides in rare peptide segments. Peptides 2010, 31, 983–988.
  • Racaniello, V.R., Baltimore, D. Molecular cloning of poliovirus cDNA and determination of the complete nucleotide sequence of the viral genome. Proc Natl Acad Sci USA 1981, 78, 4887–4891.
  • Wu, C.H., Yeh, L.S., Huang, H., Arminski, L., Castro-Alvear, J., Chen, Y., Hu, Z., Kourtesis, P., Ledley, R.S., Suzek, B.E., Vinayaka, C.R., Zhang, J., Barker, W.C. The Protein Information Resource. Nucleic Acids Res 2003, 31, 345–347.
  • Magrane, M., Consortium, U. UniProt Knowledgebase: a hub of integrated protein data. Database (Oxford) 2011, 2011, bar009.
  • PubMed Health. Bethesda ( MD): National Library of Medicine (US); [updated 2011 Jan 1; cited 2011 Jan 6].
  • Mitchell, J.A., McCray, A.T. The Genetics Home Reference: a new NLM consumer health resource. AMIA Annu Symp Proc 2003, 936.
  • Haw, R., Hermjakob, H., D’Eustachio, P., Stein, L. Reactome pathway analysis to enrich biological discovery in proteomics data sets. Proteomics 2011, 11, 3598–3613.
  • Amberger, J., Bocchini, C., Hamosh, A. A new face and new challenges for Online Mendelian Inheritance in Man (OMIM®). Hum Mutat 2011, 32, 564–567.
  • Basu, S.N., Kollu, R., Banerjee-Basu, S. AutDB: a gene reference resource for autism research. Nucleic Acids Res 2009, 37, D832–D836.
  • Banerjee-Basu, S., Packer, A. SFARI Gene: an evolving database for the autism research community. Dis Model Mech 2010, 3, 133–135.
  • Vita, R., Zarebski, L., Greenbaum, J.A., Emami, H., Hoof, I., Salimi, N., Damle, R., Sette, A., Peters, B. The immune epitope database 2.0. Nucleic Acids Res 2010, 38, D854–D862.
  • Grzmil, P., Konietzko, J., Boehm, D., Hölter, S.M., Hoelter, S.M., Aguilar-Pimentel, A., Aguilar, A., Javaheri, A., Kalaydjiev, S., Adler, T., Bolle, I., Adham, I., Dixkens, C., Wolf, S., Fuchs, H., Gailus-Durner, V., Gailus-Durne, V., Wurst, W., Ollert, M., Busch, D.H., Busch, D., Schulz, H., de Angelis, M.H., Burfeind, P. Targeted disruption of the mouse Npal3 gene leads to deficits in behavior, increased IgE levels, and impaired lung function. Cytogenet Genome Res 2009, 125, 186–200.
  • O’Leary, V.B., Mills, J.L., Pangilinan, F., Kirke, P.N., Cox, C., Conley, M., Weiler, A., Peng, K., Shane, B., Scott, J.M., Parle-McDermott, A., Molloy, A.M., Brody, L.C.; Members of the Birth Defects Research Group. Analysis of methionine synthase reductase polymorphisms for neural tube defects risk association. Mol Genet Metab 2005, 85, 220–227.
  • Silvaggi, N.R., Zhang, C., Lu, Z., Dai, J., Dunaway-Mariano, D., Allen, K.N. The X-ray crystal structures of human α-phosphomannomutase 1 reveal the structural basis of congenital disorder of glycosylation type 1a. J Biol Chem 2006, 281, 14918–14926.
  • Daub, H., Olsen, J.V., Bairlein, M., Gnad, F., Oppermann, F.S., Körner, R., Greff, Z., Kéri, G., Stemmann, O., Mann, M. Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. Mol Cell 2008, 31, 438–448.
  • Haapalainen, A.M., Meriläinen, G., Pirilä, P.L., Kondo, N., Fukao, T., Wierenga, R.K. Crystallographic and kinetic studies of human mitochondrial acetoacetyl-CoA thiolase: the importance of potassium and chloride ions for its structure and function. Biochemistry 2007, 46, 4305–4321.
  • Webb, P.A., Perisic, O., Mendola, C.E., Backer, J.M., Williams, R.L. The crystal structure of a human nucleoside diphosphate kinase, NM23-H2. J Mol Biol 1995, 251, 574–587.
  • Oppermann, F.S., Gnad, F., Olsen, J.V., Hornberger, R., Greff, Z., Kéri, G., Mann, M., Daub, H. Large-scale proteomics analysis of the human kinome. Mol Cell Proteomics 2009, 8, 1751–1764.
  • Pasterkamp, R.J., Verhaagen, J. Semaphorins in axon regeneration: developmental guidance molecules gone wrong? Philos Trans R Soc Lond, B, Biol Sci 2006, 361, 1499–1511.
  • Koncina, E., Roth, L., Gonthier, B., Bagnard, D. Role of semaphorins during axon growth and guidance. Adv Exp Med Biol 2007, 621, 50–64.
  • Kamiguchi, H. The mechanism of axon growth: what we have learned from the cell adhesion molecule L1. Mol Neurobiol 2003, 28, 219–228.
  • Schmid, R.S., Maness, P.F. L1 and NCAM adhesion molecules as signaling coreceptors in neuronal migration and process outgrowth. Curr Opin Neurobiol 2008, 18, 245–250.
  • Barallobre, M.J., Pascual, M., Del Río, J.A., Soriano, E. The Netrin family of guidance factors: emphasis on Netrin-1 signalling. Brain Res Brain Res Rev 2005, 49, 22–47.
  • Dickson, B.J., Gilestro, G.F. Regulation of commissural axon pathfinding by slit and its Robo receptors. Annu Rev Cell Dev Biol 2006, 22, 651–675.
  • Hohenester, E. Structural insight into Slit-Robo signalling. Biochem Soc Trans 2008, 36, 251–256.
  • Ditlevsen, D.K., Povlsen, G.K., Berezin, V., Bock, E. NCAM-induced intracellular signaling revisited. J Neurosci Res 2008, 86, 727–743.
  • Plioplys, A.V., Hemmens, S.E., Regan, C.M. Expression of a neural cell adhesion molecule serum fragment is depressed in autism. J Neuropsychiatry Clin Neurosci 1990, 2, 413–417.
  • Purcell, A.E., Rocco, M.M., Lenhart, J.A., Hyder, K., Zimmerman, A.W., Pevsner, J. Assessment of neural cell adhesion molecule (NCAM) in autistic serum and postmortem brain. J Autism Dev Disord 2001, 31, 183–194.
  • Yoneda, A., Wang, Y., O’Briain, D.S., Puri, P. Cell-adhesion molecules and fibroblast growth factor signalling in Hirschsprung’s disease. Pediatr Surg Int 2001, 17, 299–303.
  • Hübner, C.A., Utermann, B., Tinschert, S., Krüger, G., Ressler, B., Steglich, C., Schinzel, A., Gal, A. Intronic mutations in the L1CAM gene may cause X-linked hydrocephalus by aberrant splicing. Hum Mutat 2004, 23, 526.
  • Mah, S., Nelson, M.R., Delisi, L.E., Reneland, R.H., Markward, N., James, M.R., Nyholt, D.R., Hayward, N., Handoko, H., Mowry, B., Kammerer, S., Braun, A. Identification of the semaphorin receptor PLXNA2 as a candidate for susceptibility to schizophrenia. Mol Psychiatry 2006, 11, 471–478.
  • Moon, C., Kim, H., Ahn, M., Jin, J.K., Wang, H., Matsumoto, Y., Shin, T. Enhanced expression of netrin-1 protein in the sciatic nerves of Lewis rats with experimental autoimmune neuritis: possible role of the netrin-1/DCC binding pathway in an autoimmune PNS disorder. J Neuroimmunol 2006, 172, 66–72.
  • Sandi, C., Bisaz, R. A model for the involvement of neural cell adhesion molecules in stress-related mood disorders. Neuroendocrinology 2007, 85, 158–176.
  • Anitha, A., Nakamura, K., Yamada, K., Suda, S., Thanseem, I., Tsujii, M., Iwayama, Y., Hattori, E., Toyota, T., Miyachi, T., Iwata, Y., Suzuki, K., Matsuzaki, H., Kawai, M., Sekine, Y., Tsuchiya, K., Sugihara, G., Ouchi, Y., Sugiyama, T., Koizumi, K., Higashida, H., Takei, N., Yoshikawa, T., Mori, N. Genetic analyses of roundabout (ROBO) axon guidance receptors in autism. Am J Med Genet B Neuropsychiatr Genet 2008, 147B, 1019–1027.
  • Lourenço, F.C., Galvan, V., Fombonne, J., Corset, V., Llambi, F., Müller, U., Bredesen, D.E., Mehlen, P. Netrin-1 interacts with amyloid precursor protein and regulates amyloid-β production. Cell Death Differ 2009, 16, 655–663.
  • Li, X., Lee, A.Y. Semaphorin 5A and plexin-B3 inhibit human glioma cell motility through RhoGDIα-mediated inactivation of Rac1 GTPase. J Biol Chem 2010, 285, 32436–32445.
  • Ye, H., Liu, J., Wu, J.Y. Cell adhesion molecules and their involvement in autism spectrum disorder. Neurosignals 2010, 18, 62–71.
  • Gunn, R.K., Huentelman, M.J., Brown, R.E. Are Sema5a mutant mice a good model of autism? A behavioral analysis of sensory systems, emotionality and cognition. Behav Brain Res 2011, 225, 142–150.
  • Cello, J., Strannegård, O., Svennerholm, B. A study of the cellular immune response to enteroviruses in humans: identification of cross-reactive T cell epitopes on the structural proteins of enteroviruses. J Gen Virol 1996, 77 (Pt9), 2097–2108.
  • Ventoso, I., Barco, A., Carrasco, L. Genetic selection of poliovirus 2Apro-binding peptides. J Virol 1999, 73, 814–818.
  • Madan, V., Sánchez-Martínez, S., Carrasco, L., Nieva, J.L. A peptide based on the pore-forming domain of pro-apoptotic poliovirus 2B viroporin targets mitochondria. Biochim Biophys Acta 2010, 1798, 52–58.

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