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Research Article

Proteomic insights into the functional basis for the response regulator DrRRA of Deinococcus radiodurans

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Pages 273-280 | Received 18 Apr 2015, Accepted 28 Jan 2016, Published online: 07 Mar 2016

References

  • Basu B, Apte SK. 2012. Gamma radiation-induced proteome of Deinococcus radiodurans primarily targets DNA repair and oxidative stress alleviation. Mol Cell Proteomics. 11:M111 011734.
  • Battaglia M, Olvera-Carrillo Y, Garciarrubio A, Campos F, Covarrubias AA. 2008. The enigmatic LEA proteins and other hydrophilins. Plant Physiol. 148:6–24.
  • Bernhardt J, Volker U, Volker A, Antelmann H, Schmid R, Mach H, Hecker M. 1997. Specific and general stress proteins in Bacillus subtilis – a two-dimensional protein electrophoresis study. Microbiology. 143:999–1017.
  • Blasius M, Sommer S, Hubscher U. 2008. Deinococcus radiodurans: What belongs to the survival kit? Crit Rev Biochem Mol Biol. 43:221–238.
  • Brierley DJ, Martin SA. 2013. Oxidative stress and the DNA mismatch repair pathway. Antioxid Redox Signal. 18:2420–2428.
  • Byrgazov K, Vesper O, Moll I. 2013. Ribosome heterogeneity: Another level of complexity in bacterial translation regulation. Cur opin microbiol. 16:133–139.
  • Chen H, Wu R, Xu G, Fang X, Qiu X, Guo H, Tian B, Hua Y. 2010. DR2539 is a novel DtxR-like regulator of Mn/Fe ion homeostasis and antioxidant enzyme in Deinococcus radiodurans. Biochem Biophys Res Commun. 396:413–418.
  • Chen H, Xu G, Zhao Y, Tian B, Lu H, Yu X, Xu Z, Ying N, Hu S, Hua Y. 2008. A novel OxyR sensor and regulator of hydrogen peroxide stress with one cysteine residue in Deinococcus radiodurans. PLoS One. 3:e1602.
  • Cornelius C, Crupi R, Calabrese V, Graziano A, Milone P, Pennisi G, Radak Z, Calabrese EJ, Cuzzocrea S. 2013. Traumatic brain injury: Oxidative stress and neuroprotection. Antioxid Redox Signal. 19:836–853.
  • Cox MM, Battista JR. 2005. Deinococcus radiodurans – the consummate survivor. Nat Rev Microbiol. 3:882–892.
  • Culotta VC, Daly MJ. 2013. Manganese complexes: Diverse metabolic routes to oxidative stress resistance in prokaryotes and yeast. Antioxid Redox Signal. 19:933–944.
  • da Costa PN, Teixeira M, Saraiva LM. 2003. Regulation of the flavorubredoxin nitric oxide reductase gene in Escherichia coli: Nitrate repression, nitrite induction, and possible post-transcription control. FEMS Microbiol Lett. 218:385–393.
  • Daly MJ. 2009. A new perspective on radiation resistance based on Deinococcus radiodurans. Nat Rev Microbiol. 7:237–245.
  • Daly MJ, Gaidamakova EK, Matrosova VY, Kiang JG, Fukumoto R, Lee DY, Wehr NB, Viteri GA, Berlett BS, Levine RL. 2010. Small-molecule antioxidant proteome-shields in Deinococcus radiodurans. PLoS One. 5:e12570.
  • Daly MJ, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Leapman RD, Lai B, Ravel B, Li SM, Kemner KM, et al. 2007. Protein oxidation implicated as the primary determinant of bacterial radioresistance. PLoS Biol. 5:e92.
  • Desideri E, Vegliante R, Cardaci S, Nepravishta R, Paci M, Ciriolo MR. 2014. MAPK14/p38alpha-dependent modulation of glucose metabolism affects ROS levels and autophagy during starvation. Autophagy. 10:1652–1665.
  • Eraso JM, Roh JH, Zeng X, Callister SJ, Lipton MS, Kaplan S. 2008. Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2.4.1: Combined transcriptome and proteome analysis. J Bacteriol. 190:4831–4848.
  • Gupta RK, Patel AK, Shah N, Chaudhary AK, Jha UK, Yadav UC, Gupta PK, Pakuwal U. 2014. Oxidative stress and antioxidants in disease and cancer: a review. Asian Pac J Cancer Prev. 15:4405–4409.
  • Hua Y, Narumi I, Gao G, Tian B, Satoh K, Kitayama S, Shen B. 2003. PprI: A general switch responsible for extreme radioresistance of Deinococcus radiodurans. Biochem Biophys Res Commun. 306:354–360.
  • Imlay JA. 2003. Pathways of oxidative damage. Annu Rev Microbiol. 57:395–418.
  • Imlay JA. 2013. The molecular mechanisms and physiological consequences of oxidative stress: Lessons from a model bacterium. Nat Rev Microbiol. 11:443–454.
  • Kim J, Park W. 2014. Oxidative stress response in Pseudomonas putida. Appl Microbiol Biotechnology. 98:6933–6946.
  • Labuschagne CF, Brenkman AB. 2013. Current methods in quantifying ROS and oxidative damage in Caenorhabditis elegans and other model organism of aging. Ageing Res Rev. 12:918–930.
  • Lionaki E, Tavernarakis N. 2013. Oxidative stress and mitochondrial protein quality control in aging. J Proteomics. 92:181–194.
  • Liu C, Wang L, Li T, Lin L, Dai S, Tian B, Hua Y. 2014. A PerR-like protein involved in response to oxidative stress in the extreme bacterium Deinococcus radiodurans. Biochem Biophys Res Commun. 450:575–580.
  • Lu H, Gao G, Xu G, Fan L, Yin L, Shen B, Hua Y. 2009. Deinococcus radiodurans PprI switches on DNA damage response and cellular survival networks after radiation damage. Mol Cell Proteomics. 8:481–494.
  • Nakaminami K, Matsui A, Nakagami H, Minami A, Nomura Y, Tanaka M, Morosawa T, Ishida J, Takahashi S, Uemura M, et al. 2014. Analysis of differential expression patterns of mRNA and protein during cold- and de-acclimation in Arabidopsis. Mol Cell Proteomics. 13:3602–3611.
  • Preiser JC. 2012. Oxidative stress. JPEN. J Parenter Enteral Nutr. 36:147–154.
  • Schieber M, Chandel NS. 2014. ROS function in redox signaling and oxidative stress. Cur Biol. 24:R453–462.
  • Schmid AK, Howell HA, Battista JR, Peterson SN, Lidstrom ME. 2005. Global transcriptional and proteomic analysis of the Sig1 heat shock regulon of Deinococcus radiodurans. J Bacteriol. 187:3339–3351.
  • Slade D, Radman M. 2011. Oxidative stress resistance in Deinococcus radiodurans. Microbiol Mol Biol Rev. 75:133–191.
  • Tian B, Sun Z, Shen S, Wang H, Jiao J, Wang L, Hu Y, Hua Y. 2009. Effects of carotenoids from Deinococcus radiodurans on protein oxidation. Lett Applied Microbiol. 49:689–694.
  • Tian B, Hua Y. 2010. Carotenoid biosynthesis in extremophilic Deinococcus Thermus bacteria. Trends Microbiol. 18:512–520.
  • Venkataraman K, Khurana S, Tai TC. 2013. Oxidative stress in aging – matters of the heart and mind. IntJ Mol Sci. 14:17897–17925.
  • Visick JE, Clarke S. 1995. Repair, refold, recycle: How bacteria can deal with spontaneous and environmental damage to proteins. Mol Microbiol. 16:835–845.
  • Wang L, Xu G, Chen H, Zhao Y, Xu N, Tian B, Hua Y. 2008. DrRRA: A novel response regulator essential for the extreme radioresistance of Deinococcus radiodurans. Mol Microbiol. 67:1211–1222.
  • Wang L, Yin L, Xu G, Li M, Zhang H, Bing T, Hua Y. 2012. Cooperation of PprI and DrRRA in response to extreme ionizing radiation in Deinococcus radiodurans. Chinese Sci Bull. 57:98–104.
  • Yin L, Wang L, Lu H, Xu G, Chen H, Zhan H, Tian B, Hua Y. 2010. DRA0336, another OxyR homolog, involved in the antioxidation mechanisms in Deinococcus radiodurans. J Microbiol. 48:473–479.
  • Zhang W, Baseman JB. 2014. Functional characterization of osmotically inducible protein C (MG_427) from Mycoplasma genitalium. J Bacteriol. 196:1012–1019.

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