Molecular characterization and expression of microbial inulinase genes

References

• Akimoto H, Kiyota N, Kushima T, Nakamura T, Ohta K. (2000). Molecular cloning and sequence analysis of an endoinulinase gene from Penicillium sp. strain TN-88. Biosci Biotechnol Biochem, 64, 2328–2335.
   PubMed Web of Science ®Google Scholar
• Akimoto H, Kushima T, Nakamura T, Ohta K. (1999). Transcriptional analysis of two endoinulinase genes inuA and inuB in Aspergillus niger and nucleotide sequences of their promoter regions. J Biosci Bioeng, 88, 599–604.
   PubMed Web of Science ®Google Scholar
• Bergkamp RJ, Bootsman TC, Toschka HY, Mooren AT, Kox L, Verbakel JM, Geerse RH, Planta RJ. (1993). Expression of an α-galactosidase gene under control of the homologous inulinase promoter in Kluyveromyces marxianus. Appl Microbiol Biotechnol, 40, 309–317.
   Google Scholar
• Chen XM, Xu XM, Jin ZY, Chen HQ. (2012). Expression of an endoinulinase from Aspergillus ficuum JNSP5-06 in Escherichia coli and its characterization. Cabon Polym. doi:10.1016/j.carbpol.2012.01.036.
   Google Scholar
• Chi Z, Chi Z, Zhang T, Liu G, Yue L. (2009). Inulinase-expressing microorganisms and applications of inulinases. Appl Microbiol Biotechnol, 82, 211–220.
   PubMed Web of Science ®Google Scholar
• Chi ZM, Zhang T, Cao TS, Liu XY, Cui W, Zhao CH. (2011). Biotechnological potential of inulin for bioprocesses. Bioresour Technol, 102, 4295–4303.
   PubMed Web of Science ®Google Scholar
• Cui W, Wang Q, Zhang F, Zhang SC, Chi ZM, Madzak C. (2011). Direct conversion of inulin into single cell protein by the engineered Yarrowia lipolytica carrying inulinase gene. Proc Biochem, 46,1442–1448.
   Google Scholar
• Gancedo JM. (1998). Yeast carbon catabolite repression. Microbiol Mol Biol Rev, 62, 334–361.
   PubMed Web of Science ®Google Scholar
• Gong F, Sheng J, Chi Z, Li J. (2007). Inulinase production by a marine yeast Pichia guilliermondii and inulin hydrolysis by the crude inulinase. J Ind Microbiol Biotechnol, 34, 179–185.
   PubMed Web of Science ®Google Scholar
• Gong F, Chi ZM, Sheng J, Li J, Wang XH. (2008). Purification and characterization of extracellular inulinase from a marine yeastn Pichia guilliermondii and Inulin hydrolysis by the purified inulinase. Biotechnol Bioproc Eng, 13, 533–539.
   Web of Science ®Google Scholar
• Kang SI, Kim SI. (1999) Molecular cloning and sequence analysis of an endo-inulinase gene from Arthrobacter sp. Biotechnol Lett, 21, 569–574.
   Web of Science ®Google Scholar
• Kango N, Jain SC. (2011). Production and properties of microbial inulinases: recent advances, Food Biotechnol, 25, 165–212.
   Web of Science ®Google Scholar
• Kim BW, Kim HW, Nam SW. (1997). Continuous production if fructose-syrup from inulin by immobilized inulinase from recombinant Saccharomyces cerevisiae. Biotechnol Bioproc Eng, 2, 90–93.
   Google Scholar
• Kim KY, Nascimento AS, Golubev AM, Polikarpov I, Kim CS, Kang SI, Kim SI. (2008). Catalytic mechanism of inulinase from Arthrobacter sp. S37. Biochem Biophys Res Commun, 371, 600–605.
   PubMed Web of Science ®Google Scholar
• Kwon YM, Kim HY, Choi YJ. (2000). Cloning and characterization of Pseudomonas mucidolens exo-inulinase. J Microbiol Biotechnol, 10, 238–243.
   Web of Science ®Google Scholar
• Kwon HJ, Jeon SJ, You DJ, Kim KH, Jeong YK, Kim YH, Kim YM, Kim BW. (2003). Cloning and characterization of an exoinulinase from Bacillus polymyxa. Biotechnol Lett, 25, 155–159.
   PubMed Web of Science ®Google Scholar
• Kuzuwa S, Yokoi KJ, Kondo M, Kimoto H, Yamakawa A, Taketo A, Kodaira K. (2012). Properties of the inulinase gene levH1 of Lactobacillus casei IAM 1045; cloning, mutational and biochemical characterization. Gene, 495, 154–162.
   PubMed Web of Science ®Google Scholar
• Laloux O, Cassart JP, Delcour J, Van Beeumen J, Vandenhaute J. (1991). Cloning and sequencing of the inulinase gene of Kluyveromyces marxianus var. marxianus ATCC 12424. FEBS Lett, 289, 64–68.
   PubMed Web of Science ®Google Scholar
• Lane MM, Morrissey JP. (2010). Kluyveromyces marxianus: A yeast emerging from its sister’s shadow. Fung Biol Rev, 2, 1–10.
   Google Scholar
• Li SZ, Chan-Halbrendt SZ. (2009). Ethanol production in (the) People’s Republic of China: potential and technologies. Appl Energ, 86, S162–S169.
   Web of Science ®Google Scholar
• Li Y, Liu GL, Wang K, Chi ZM, Madzak C. (2012). Overexpression of the endo-inulinase gene from Arthrobacter sp. S37 in Yarrowia lipolytica and characterization of the recombinant endo-inulinase. J Mole Cata B Enz, 74, 109–115.
   Web of Science ®Google Scholar
• Liu XY, Chi Z, Liu GL, Wang F, Madzak C, Chi ZM. (2010). Inulin hydrolysis and citric acid production from inulin using the surface-engineered Yarrowia lipolytica displaying inulinase. Metab Eng, 12, 469–476.
   PubMed Web of Science ®Google Scholar
• Liu GL, Wang DS, Wang LF, Zhao SF, Chi ZM. (2011). Mig1 is involved in mycelial formation and expression of the genes encoding extracellular enzymes in Saccharomycopsis fibuligera A11. Fung Genet Biol, doi:10.1016/j.fgb.2011.04.008.
   Google Scholar
• MacPherson S, Larochelle M, Turcotte B. (2006). A fungal family of transcriptional regulators: the zinc cluster proteins. Microbiol Mol Biol Rev, 70, 583–604.
   PubMed Web of Science ®Google Scholar
• Madzak C, Gaillardin C, Beckerich JM. (2004). Heterologous protein expression and secretion in the non-conventional yeast Yarrowia lipolytica: a review. J Biotechnol, 109, 63–81.
   PubMed Web of Science ®Google Scholar
• Moriyama S, Akimoto H, Suetsugu N, Kawasaki S, Nakamura T, Ohta K. (2002). Purification and properties of an extracellular exoinulinase from Penicillium sp. strain TN-88 and sequence analysis of the encoding gene. Biosci Biotechnol Biochem, 66, 1887–1896.
   PubMed Web of Science ®Google Scholar
• Moriyama S, Tanaka H, Uwataki M, Muguruma M, Ohta K. (2003). Molecular cloning and characterization of an exoinulinase gene from Aspergillus niger strain 12 and its expression in Pichia pastoris. J Biosci Bioeng, 96, 324–331.
   PubMed Web of Science ®Google Scholar
• Moriyama S, Muguruma M, Ohta K. (2006). Quantitative expression analysis of inulinase gene cluster of Penicillium sp. strain TN-88. J Biosci Bioeng, 101, 277–279.
   PubMed Web of Science ®Google Scholar
• Nagem RA, Rojas AL, Golubev AM, Korneeva OS, Eneyskaya EV, Kulminskaya AA, Neustroev KN, Polikarpov I. (2004). Crystal structure of exo-inulinase from Aspergillus awamori: the enzyme fold and structural determinants of substrate recognition. J Mol Biol, 344, 471–480.
   PubMed Web of Science ®Google Scholar
• Nicaud JM, Madzak C, van den Broek P, Gysler C, Duboc P, Niederberger P, Gaillardin C. (2002). Protein expression and secretion in the yeast Yarrowia lipolytica. FEMS Yeast Res, 2, 371–379.
   PubMed Web of Science ®Google Scholar
• Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R, Fosker N, Fraser A, García JL, García MJ, Goble A, Goldman GH, Gomi K, Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J, Humphray S, Jiménez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S, Kulkarni R, Kumagai T, Lafon A, Lafton A, Latgé JP, Li W, Lord A, Lu C, Majoros WH, May GS, Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O’Neil S, Paulsen I, Peñalva MA, Pertea M, Price C, Pritchard BL, Quail MA, Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD, Rodriguez de Córdoba S, Rodríguez-Peña JM, Ronning CM, Rutter S, Salzberg SL, Sanchez M, Sánchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S, Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O, Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B, Denning DW. (2005). Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature, 438, 1151–1156.
   PubMed Web of Science ®Google Scholar
• Ohta K, Akimoto H, Matsuda S, Toshimitsu D, Nakamura T. (1998). Molecular cloning and sequence analysis of two endoinulinase genes from Aspergillus niger. Biosci Biotechnol Biochem, 62, 1731–1738.
   PubMed Web of Science ®Google Scholar
• Onodera S, Murakami T, Ito H, Mori H, Matsui H, Honma M, Chiba S, Shiomi N. (1996). Molecular cloning and nucleotide sequences of cDNA and gene encoding endo-inulinase from Penicillium purpurogenum. Biosci Biotechnol Biochem, 60, 1780–1785.
   PubMed Web of Science ®Google Scholar
• Park S, Jeong HY, Kim HS, Yang MS, Chae KS. (2001). Enhanced production of Aspergillus ficuum endoinulinase in Saccharomyces cerevisiae by using the SUC2-deletion mutation. Enzy Microb Technol, 29, 107–110.
   Web of Science ®Google Scholar
• Rabaatun Adawiyah S, Shuhaimi M, Mohd Yazid AM, Abdul Manaf A, Rosli AN, Sreeramana S. (2011). Molecular cloning and sequence analysis of an inulinase gene from an Aspergillus sp. World J Microbiol Biotechnol, 27, 2173–2185.
   Google Scholar
• Sheng J, Chi Z, Gong F, Li J. (2008). Purification and characterization of extracellular inulinase from a marine yeast Cryptococcus aureus G7a and inulin hydrolysis by the purified inulinase. Appl Biochem Biotechnol, 144, 111–121.
   PubMed Web of Science ®Google Scholar
• Sheng J, Chi ZM, Li J, Gao L, Gong F. (2007). Inulinase production by the marine yeast Cryptococcus aureus G7a and inulin hydrolysis by crude inulinase. Proc Biochem, 42, 805–811.
   Web of Science ®Google Scholar
• Tsujimoto Y, Watanabe A, Nakano K, Watanabe K, Matsui H, Tsuji K, Tsukihara T, Suzuki Y. (2003). Gene cloning, expression, and crystallization of a thermostable exo-inulinase from Geobacillus stearothermophilus KP1289. Appl Microbiol Biotechnol, 62, 180–185.
   PubMed Web of Science ®Google Scholar
• Uhm TB, Chae KS, Lee DW, Kim HS, Cassart JP, Vandenhaute J. (1998). Cloning and nucleotide sequence of the endoinulinase-encoding gene, inu2, from Aspergillus ficuum. Biotechnol Lett, 20, 809–912.
   Web of Science ®Google Scholar
• Van den EndeW, Michiels A, De Roover J, Verhaert P, Van Laere A. (2000). Cloning and functional analysis of chicory root fructan1-exohydrolase I (1-FEH I): a vacuolar enzyme derived from a cell-wall invertase ancestor? Mass fingerprint of the 1-FEH I enzyme. Plant J, 24, 447–456.
   PubMed Web of Science ®Google Scholar
• Wang F, Yue L, Wang L, Madzak C, Li J, Wang X, Chi Z. (2009). Genetic modification of the marine-derived yeast Yarrowia lipolytica with high-protein content using a GPI-anchor-fusion expression system. Biotechnol Prog, 25, 1297–1303.
   Google Scholar
• Wang L, Huang Y, Long X, Meng X, Liu Z. (2011). Cloning of exoinulinase gene from Penicillium janthinellum strain B01 and its high-level expression in Pichia pastoris. J Appl Microbiol, 111, 1371–1380.
   PubMed Web of Science ®Google Scholar
• Wang J, Teng D, Yao Y, Yang Y, Zhang F. (2004). Expression of Aspergillus niger 9891 endoinulinase in Pichia pastoris. High Technol Lett, 10, 52–56.
   Google Scholar
• Wen T, Liu F, Huo K, Li YY. (2003). Cloning and analysis of the inulinase gene from Kluyveromyces cicerisporus CBS4857. World J Microbiol Biotechnol, 19, 423–426.
   Google Scholar
• Yu J, Jiang J, Fang Z, Li Y, Lv H, Liu J. (2010). Enhanced expression of heterologous inulinase in Kluyveromyces lactis by disruption of hap1 gene. Biotechnol Lett, 32, 507–512.
   PubMed Web of Science ®Google Scholar
• Yu J, Jiang J, Ji W, Li Y, Liu J. (2011). Glucose-free fructose production from Jerusalem artichoke using a recombinant inulinase-secreting Saccharomyces cerevisiae strain. Biotechnol Lett, 33, 147–152.
   Google Scholar
• Yuan XL, Goosen C, Kools H, van der Maarel MJ, van den Hondel CA, Dijkhuizen L, Ram AF. (2006). Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger. Microbiology (Reading, Engl), 152, 3061–3073.
   PubMed Web of Science ®Google Scholar
• Yuan XL, Roubos JA, van den Hondel CA, Ram AF. (2008). Identification of InuR, a new Zn(II)2Cys6 transcriptional activator involved in the regulation of inulinolytic genes in Aspergillus niger. Mol Genet Genomics, 279, 11–26.
   PubMed Web of Science ®Google Scholar
• Yue L, Chi Z, Wang L, Liu J, Madzak C, Li J, Wang X. (2008). Construction of a new plasmid for surface display on cells of Yarrowia lipolytica. J Microbiol Methods, 72, 116–123.
   Google Scholar
• Yun JW, Choi YJ, Song CH, Song SK. (1999). Microbial production of inulo-oligosaccharides by an endoinulinase from Pseudomonas sp. expressed in Escherichia coli. J Biosci Bioeng, 87, 291–295.
   PubMed Web of Science ®Google Scholar
• Zhang T, Gong F, Peng Y, Chi ZM. (2009a).Optimization for high-level expression of the Pichia guilliermondii recombinant inulinase in Pichia pastoris and characterization of the recombinant inulinase. Proc Biochem, 44, 1335–1339.
   Google Scholar
• Zhang T, Gong F, Chi Z, Liu G, Chi Z, Sheng J, Li J, Wang X. (2009b). Cloning and characterization of the inulinase gene from a marine yeast Pichia guilliermondii and its expression in Pichia pastoris. Antonie Van Leeuwenhoek, 95, 13–22.
   PubMed Web of Science ®Google Scholar
• Zhang T, Chi Z, Zhao CH, Chi ZM, Gong F. (2010a). Bioethanol production from hydrolysates of inulin and the tuber meal of Jerusalem artichoke by Saccharomyces sp. W0. Bioresour Technol, 101, 8166–8170.
   PubMed Web of Science ®Google Scholar
• Zhang T, Chi Z, Chi Z, Parrou JL, Gong F. (2010b). Expression of the inulinase gene from the marine-derived Pichia guilliermondii in Saccharomyces sp. W0 and ethanol production from inulin. Microb Biotechnol, 3, 576–582.
   PubMed Web of Science ®Google Scholar
• Zhang S, Yang F, Wang Q, Hua Y, Zhao ZK. (2012). High-level secretory expression and characterization of the recombinant Klyuveromyces marxianus. Proc Biochem, 47, 151–155.
   Web of Science ®Google Scholar
• Zhao CH, Cui W, Liu XY, Chi ZM, Madzak C. (2010). Expression of inulinase gene in the oleaginous yeast Yarrowia lipolytica and single cell oil production from inulin-containing materials. Metab Eng, 12, 510–517.
   PubMed Web of Science ®Google Scholar