An improved plant leaf protein extraction method for high resolution two-dimensional polyacrylamide gel electrophoresis and comparative proteomics

References

• Agrawal GK, Rakwal R (2011) Rice proteomics: a move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology. Proteomics 11: 1630–1649.
   PubMed Web of Science ®Google Scholar
• Ahsan N, Lee D-G, Lee S-H, Kang KY, Bahk JD, Choi MS, Lee JJ, Renaut J, Lee B-H (2007) Comparative proteomic analysis of tomato leaves in response to waterlogging stress. Physiol. Plant 131: 555–570.
   Google Scholar
• Alam I, Lee D-G, Kim K-H, Park C-H, Sharmin S, Lee H, Oh K-W, Yun B-W, Lee B-H (2010) Proteome analysis of soybean roots under waterlogging stress at an early vegetative stage. J. Biosci. 35: 49–62.
   Google Scholar
• Alam I, Sharmin SA, Kim K-H, Kim YG, Lee JJ, Bahk JD, Lee B-H (2011) Comparative proteomic approach to identify proteins involved in flooding combined with salinity stress in soybean. Plant Soil 346: 45–62.
   Google Scholar
• Chen T, Qi J-M, Xu J-T, Chen P-P, Tao A-F, Chen F-C, Chen W (2011) Optimization of two-dimensional gel electrophoresis for kenaf leaf proteins. Agric. Sci. China 10: 1842–1850.
   Google Scholar
• Cosio EG, McClure JW (1984) Kaempferol glycosides and enzymes of flavonol biosynthesis in leaves of a soybean strain with low photosynthetic rates. Plant Physiol. 74: 877–881.
   Google Scholar
• Carpentier SB, Witters E, Laukens K, Deckers P, Swennen R, Panis B (2005) Preparation of protein extracts from recalcitrant plant tissues: an evaluation of different methods for two-dimensional gel electrophoresis analysis. Proteomics 5: 2497–2507.
   PubMed Web of Science ®Google Scholar
• Eriksson J, Fenyo D (2007) Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs. Nat. Biotechnol. 25: 651–655.
   PubMed Web of Science ®Google Scholar
• Gygi SP, Rochon Y, Franza BR, Aebersold R (1999) Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19: 1720–1730.
   PubMed Web of Science ®Google Scholar
• Gygi SP, Corthals GL, Zhang YN, Rochon Y, Aebersold R (2000) Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc. Nat. Acad. Sci. USA 97: 9393–9395.
   Google Scholar
• Hertog MGL, Hollman PCH, van de Putte B (1993) Content of potentially anticarcinogenic flavonoids of tea infusions, wines, and fruit juices. J. Agric. Food Chem. 41: 1242–1246.
   Web of Science ®Google Scholar
• Hille JM, Freed AL, Watzig H (2001) Possibilities to improve automation, speed and precision of proteome analysis: a comparison of two-dimensional electrophoresis and alternatives. Electrophoresis 22: 4035–4052.
   PubMed Web of Science ®Google Scholar
• Isaacson T, Damasceno CMB, Saravanan RS, He Y, Catala C, Saladie M, Rose JKC (2006) Sample extraction techniques for enhanced proteomic analysis of plant tissues. Nat. Protoc. 1: 769–774.
   PubMed Web of Science ®Google Scholar
• Ishida H, Nishimori T, Sugisawa M, Makino A, Mae T (1997) The large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase is fragmented into 37-kDa and 16-kDa polypeptides by active oxygen in the lysates of chloroplasts from primary leaves of wheat. Plant Cell Physiol. 38: 471–479.
   PubMed Web of Science ®Google Scholar
• Kim ST, Cho KS, Jang YS, Kang KY (2001) Two- dimensional electrophoresis of rice proteins by polyethylene glycol fractionation for protein arrays. Electrophoresis 22: 2103–2109.
   PubMed Web of Science ®Google Scholar
• Komatsu S, Ahsan N (2009) Soybean proteomics and its application to functional analysis. J. Proteom. 72: 325–336.
   PubMed Web of Science ®Google Scholar
• Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680–685.
   PubMed Web of Science ®Google Scholar
• Lee D-G, Ahsan N, Lee S-H, Kang KY, Bahk J-D, Lee IJ, Lee B-H (2007a) A proteomic approach in analyzing heat-responsive proteins in rice leaves. Proteomics 7: 3369–3383.
   PubMed Web of Science ®Google Scholar
• Lee, D-G, Ahsan, N, Lee S-H, Kang KY, Lee JJ, Lee, B-H (2007b) An approach to identify cold-induced low-abundant proteins in rice leaf. C. R. Biol. 330: 215–225.
   Google Scholar
• Lin, Y-L, Juan IM, Chen Y-L, Liang Y-C, Lin J-K (1996) Composition of polyphenols in fresh tea leaves and associations of their oxygen-radical-absorbing capacity with antiproliferative actions in fibroblast cells. J. Agric. Food Chem. 44: 1387–1394.
   Web of Science ®Google Scholar
• Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with the folin phenol reagent. J. Biol. Chem. 193: 265–275.
   PubMed Web of Science ®Google Scholar
• Mann M, Hendrickson RC, Pandey A (2001) Analysis of proteins and proteomes by mass spectrometry, Ann. Rev. Biochem. 70: 437–473.
   PubMed Web of Science ®Google Scholar
• Newton RP, Brenton AG, Smith CJ, Dudley E (2004) Plant proteome analysis by mass spectrometry: principles, problems, pitfalls and recent developments. Phytochemistry 65: 1449–1485.
   Google Scholar
• Saravanan RS, Rose JKC (2004) A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 4: 2522–2532.
   PubMed Web of Science ®Google Scholar
• Sarma A D, Oehrle NW, Emerich DW (2008) Plant protein isolation and stabilization for enhanced resolution of two-dimensional polyacrylamide gel electrophoresis. Anal. Biochem. 379: 192–195.
   Google Scholar
• Shaw MM, Riederer BM (2003) Sample preparation for two-dimensional gel electrophoresis. Proteomics 3: 1408–1417.
   PubMed Web of Science ®Google Scholar
• Tirumalai RS, Chan KC, Prieto DA, Issaq HJ, Conrads TP, Veenstra TD (2003) Characterization of the low molecular weight human serum proteome. Mol. Cell. Proteom. 2: 1096–1103.
   PubMed Web of Science ®Google Scholar
• Walliwalagedara C, van Keulen H, Cutright T, Wei R (2010) Comparison of sample preparation methods for the resolution of metal-regulated proteins in Helianthus Annuus by 2-dimensional gel-electrophoresis. Open Proteom. J. 3: 20–25.
   Google Scholar
• Wang W, Scali M, Vignani R, Spadafora A, Sensi E, Mazzuca S, Cresti M (2003) Protein extraction for two-dimensional electrophoresis from olive leaf, a plant tissue containing high levels of interfering compounds. Electrophoresis 24: 2369–2375.
   PubMed Web of Science ®Google Scholar
• Wang W, Vignani R, Scali M, Cresti M (2006) A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis. Electrophoresis 27: 2782–2786.
   PubMed Web of Science ®Google Scholar
• Xi J, Wang X, Li S, Zhou X, Yue L, Fan J, Hao D (2006) Polyethylene glycol fractionation improved detection of low-abundant proteins by two-dimensional electrophoresis analysis of plant proteome. Phytochemistry 67: 2341–2348.
   Google Scholar
• Xu C, Garrett WM, Sullivan J, Caperna TJ, Natarajan S (2006) Separation and identification of soybean leaf proteins by two-dimensional gel electrophoresis and mass spectrometry. Phytochemistry 67: 2431–2440.
   Google Scholar