Publication Cover
Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 24, 2013 - Issue 3
114
Views
6
CrossRef citations to date
0
Altmetric
Full Length Research Papers

Population structure of Tor tor inferred from mitochondrial gene cytochrome b

, , , &
Pages 290-296 | Received 31 Aug 2012, Accepted 15 Dec 2012, Published online: 29 Jan 2013

References

  • Avise JC. 1994. Molecular markers. Natural history and evolution. New York: Chapman and Hall.
  • Avise JC. 2000. Phylogeography: The history and formation of species. Cambridge, MA: Harvard University Press.
  • Apostolidis AP, Triantaphyllidis C, Kouvatsi A, Economidis PS. 1997. Mitochondrial DNA sequence variation and phylogeography among Salmo trutta L. (Greek brown trout) populations. Mol Ecol. 6 6: 531–542.
  • Bandelt HJ, Forster P, Roehl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16:37–48.
  • CAMP. 1998. Report of the workshop “Conservation, Assessment and Management Plan for Freshwater fishes of India 1997” organized by Zoo Outreach Organization (ZOO) and National Bureau of Fish Genetic Resources, Lucknow, held at NBFGR in September 1997. pp 156.
  • Chenoweth SF, Hughes JM, Connolly RC. 2002. Phylogeography of the pipefish, Urocampus carinirostris, suggests secondary intergradation of ancient lineages. Mol Biol. 141:541–547.
  • Desai VR. 1982. Studies on Fishery and Biological Aspects of Tor Mahseer, Tor tor (Ham.) from River Narmada, PhD Thesis, Agra University, Agra.
  • Desai VR. 2003. Synopsis of biological data on the tor mahseer Tor tor (Hamilton, 1822), FAO Fisheries Synopsis. No. 158. Rome, FAO. pp 36.
  • Dubey GP. 1959. For its fish seed M.P. can now depend on Narmada. Indian Fmg. 8 11: 6–9.
  • Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 131:479–491.
  • Excoffier LG, Schneider S. 2005. Arlequin (version 3.0) An integrated software package for population genetics data analysis. Evol Bioinform Online. 1:47–50.
  • Finne KL. 2001. Phylogeographic structure of the Atlantic pupfish, Cyprinodon variegates (Cyprinodontidae), along the eastern coast of North America, Unpublished MS Thesis, Virginia Polytechnic Institute and State University, Blacksburg, Virginia.
  • Fu YX, Li WH. 1993. Statistical tests of neutrality of mutations. Genetics. 133:693–709.
  • Grant WS, Bowen BW. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation. J Hered. 89:415–426.
  • Gurung TB, Rai AK, Joshi PL, Nepal A, Baidya A, Bista J, Basnet SR. 2002. Breeding of Pond Reared Golden Mahseer (Tor putitora) in Pokhara, Nepal, FAO Fish. Tech. Pap. 431 pp 147–159.
  • Hora SL. 1939. The game fishes of India. VIII. The mahseers or the large-scaled barbels of India. J Bombay Nat Hist Soc. 41:272–285.
  • Hora SL. 1942. The game fishes of India XV. The mahseer or the large-scaled barbels of India. 8. On the specific identity of Syke's species of Barbus from the Deccan. J Bombay Nat Hist Soc. 43:163–169.
  • Hora SL. The game fishes of India XVI. The mahseer or the large-scaled barbels of India. 9. Further observations on mahseer from the Deccan. J Bombay Nat Hist Soc. 1943a; 44:1–8.
  • Hora SL. The game fishes of India XVII. The mahseers or the large-scaled barbels of India. On the specific identity of Jerdon's species of mahseer from Southern India. J Bombay Nat Hist Soc. 1943b; 44:164–168.
  • Ingram BA, Sungan S, Gooley G, Sim SY, Tinggi D, De Silva SS. 2005. Induced spawning, larval development and rearing of two indigenous Malaysian mahseer Tor tambroides and T. douronensis. Aquacult. Res.. 36:1001–1014.
  • Irwin DM, Kocher TD, Wilson AC. 1991. Evolution of the cytochrome b gene of mammals. J Mol Evol. 32:128–144.
  • Joshi CB. 1988. Induced breeding of mahseer, Tor putitora (Hamilton). J Inland Fish Soc India. 20:66–67.
  • Johns GC, Avise JC. 1998. A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Mol Biol Evol. 15:1481–1490.
  • Kotlik P, Berrebi P. 2001. Phylogeography of the barbell (Barbus barbus) assessed by mitochondrial DNA variation. Mol Ecol. 10:2177–2185.
  • Lakra WS, Ayyappan S. 2003. Recent Advances in Biotechnology Applications to Aquaculture. Asian-Aust J Anim Sci. 16 3: 455–462.
  • Lakra WS, Sarkar UK. 2007. Fish diversity of central India. Lucknow, Uttar Pradesh: NBFGR Publication1–183.
  • Lakra WS, Goswami M, Gopalakrishnan A. 2009. Molecular identification and phylogenetic relationships of seven Indian Sciaenids (Pisces: Perciformes, Sciaenidae) based on 16S rRNA and cytochrome c oxidase subunit I mitochondrial genes. Mol Biol Rep. 36:831–839.
  • Lakra WS, Goswami M, Sarkar UK. 2010. Conservation biology of Indian mahseers. Indian J Anim Sci. 80 (4) Suppl. 1: 98–108.
  • Langer RK, Ogale SN, Ayyappan S. 2001. Mahseer in Indian subcontinent – a bibliography. Mumbai: Central Institute of Fisheries Education.
  • Linda KP, Paul M. 1995. Developments in molecular genetic techniques in fisheries. London: Chapman and Hall.
  • Marshall CRE. 2005. Evolutionary Genetics of Barramundi (Lates calcarifer) in the Australian Region, Unpublished PhD Thesis, School of Biological Sciences and Biotechnology, Murdoch University, Perth, Western Australia.
  • Menon AGK. 1992. Taxonomy of the mahseer fishes of the genus Tor Gray with description of new species from the Deccan. J Bombay Nat Hist Soc. 89 2: 210–228.
  • Menon AGK, Singh HR, Kumar N. 2000. Present eco-status of cold water fish and fisheries. In: Singh HR, Lakra WS. editors. Coldwater fish and fisheries. New Delhi: Narendra Publishing House1–36.
  • Mohindra V, Khare P, Lal KK, Punia P, Singh RK, Barman AS, Lakra WS. 2007. Molecular discrimination of five Mahseer species from Indian peninsula using RAPD analysis. Curr Zool. 53 4: 725–732.
  • Nandeesha MC, Bhadraswamy G, Patil JG, Varghese TJ, Sarma K, Keshavanath P. 1993. Preliminary results on induced spawning of pond-raised mahseer, Tor khudree. J Aquacult Trop. 8:55–60.
  • Nautiyal P, Bhatt JP, Rawat VS, Kishor B, Nautiyal R, Singh HR. 1998. Himalayan mahseer: Magnitude of commercial fishery in Garhwal hills. Fish Gen. Biodiversity Conserv Netcon Publ. 5:107–114.
  • Ogale SN. 2002. Mahseer breeding and conservation and possibilities of commercial culture, The Indian experience. 431. FAO Fisheries Technical Paper. 193–212.
  • Petr T, Swar D. 2002. Cold water fisheries in the trans-Himalayan countries, FAO Fish. Technical Paper 431. pp 362.
  • Perdices A, Cunha C, Coelho MM. 2004. Phylogenetic structure of Zacco platypus (Teleostei, Cyprinidae) populations on the upper and middle Chang Jiang ( = Yangtze) drainage inferred from cytochrome b sequences. Mol Phylogenet Evol. 31:192–203.
  • Ruzzante DE, Taggart CT, Cook C, Goddard S. 1996. Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua) off New found land: Microsatellite DNA variation and antifreeze level. Can J Fish Aquat Sci. 53:634–645.
  • Rozas J, Sanchez-Delbarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analysis by the coalescent and other methods. Bioinformatics. 19:2496–2497.
  • Song Z, Song J, Yue B. 2008. Population genetic diversity of Prenant's schizothoracin, Schizothorax prenanti, inferred from the mitochondrial DNA control region. Environ Biol Fish. 81:247–252.
  • Tajima F. 1989. Statistical methods to test for nucleotide mutation hypothesis by DNA polymorphism. Genetics. 123:585–595.
  • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic acids research advance access. Nucleic Acids Res. 22:4673–4680.
  • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA 4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596–1599.
  • Teske PR, Hamilton H, Palsboll PJ, Choo CK, Gabr H, Lourie SA, Santos M, Sreepada A, Cherry MI, Matthee CA. 2005. Molecular evidence for longdistance colonization in an Indo-Pacific seahorse lineage. Mar Ecol-Prog Ser. 286:249–260.
  • Tinti F, Di Nunno C, Guarniero I, Talenti M, Tommasini S, Fabbri E, Piccinetti C. 2002. Mitochondrial DNA sequence variation suggests the lack of genetic heterogeneity in the ÿonianÿc and ÿonian stocks of Sardina pilchardus. Mar Biotechnol. 4:163–172.
  • Ward RD, Woodwark M, Skinbinski DOF. 1994. A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. J Fish Biol. 44:213–232.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.