References
- Alava MNR, Dolumbaló ERZ. (2002). Fishery and Trade of Whale Sharks and Manta Rays in the Bohol Sea, Philippines. In: Fowler SL, Reed TM, Dipper FA, editors. Elasmobranch biodiversity, conservation and management: Proceedings of the International Seminar and Workshop in Sabah, July 1997. Gland, Switzerland and Cambridge, UK: IUCN SSC Shark Specialist Group. p 132–48
- Barut NC, Zartiga JS. (2002). Shark fisheries in the Philippines. In: Fowler SL, Reed TM, Dipper FA, editors. Elasmobranch Biodiversity, Conservation and Management: Proceedings of the International Seminar and Workshop, Sabah, Malaysia, July 1997. Gland, Switzerland and Cambridge, UK: IUCN SSC Shark Specialist Group. p xv + 258
- Bhattacharjee MJ, Laskar BA, Dhar B, Ghosh SK. (2012). Identification and re-evaluation of freshwater catfishes through DNA barcoding. PLoS One 7:e49950
- Bonfil R. (2002). Trends and patterns in world and Asian elasmobranch fisheries. In: Fowler SL, Reed TM, Dipper FA, editors. Elasmobranch Biodiversity, Conservation and Management: Proceedings of the International Seminar and Workshop, Sabah, Malaysia, July 1997. Gland, Switzerland and Cambridge, UK: IUCN SSC Shark Specialist Group. p xv + 258
- Bonfil R, Amorim A, Anderson C, Arauz R, Baum J, Clarke SC, Graham RT, et al. (2009). Carcharhinus falciformis. In: IUCN 2013. IUCN Red List of Threatened Species. Version 2013.2. Available at: <www.iucnredlist.org> (Accessed 26 March 2014).
- Briones AA, Yambot AV, Shiao JC, Iizuka Y, Tzeng WN. (2007). Migratory pattern and habitat use of tropical eels Anguilla spp. (Teleostei: Anguilliformes: Anguillidae) in the Philippines, as revealed by otolith microchemistry. Raffles B Zool 14:141–9
- Carpenter KE, Niem VH. (1999). FAO species identification guide for fishery purposes. The living marine resources of the Western Central Pacific. Volume 3. Batoid fishes, chimaeras and bony fishes part 1 (Elopidae to Linophrynidae). Rome: FAO. p 1397–2068
- Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES). (2013). Appendices I, II, and III. Available at: <http://www.cites.org/sites/default/files/eng/app/2013/E-Appendices-2013-06-12.pdf> (Accessed 25 March 2014).
- Compagno LJV, Last PR, Stevens JD, Alava MNR (2005). Checklist of Philippines Chondrichthyes. CSIRO Marine Laboratories Report 243
- Crook V. (2010). Trade in Anguilla species, with a focus on recent trade in European eel A. anguilla. TRAFFIC report prepared for the European Commission
- de-Franco BA, Mendonça FF, Oliveira C, Foresti F. (2012). Illegal trade of the guitarfish Rhinobatoshorkeliion the coasts of central and southern Brazil: Genetic identification to aid conservation. Aquatic Conserv Mar Freshw Ecosyst 22:272–6
- Doyle JJ, Doyle JL. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
- FAO Fisheries Department. (2012). FISHSTAT Plus. Capture Production 1950–2010. Fisheries Information, Data and Statistics Unit, FAO
- Felsenstein J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783–91
- Fowler SL. (2002). Elasmobranch biodiversity, conservation and management in Sabah. In: Fowler SL, Reed TM, Dipper FA, editors. Elasmobranch Biodiversity, Conservation and Management: Proceedings of the International Seminar and Workshop, Sabah, Malaysia, July 1997. Gland, Switzerland and Cambridge, UK: IUCN SSC Shark Specialist Group. p xv + 258
- Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. (1994). DNA primers for amplification mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Marine Biol Biotechnol 3:294–9
- Gutierrez PC. (1976). The prospect of eel culture in the Philippines. Proceedings of the Indo-pacific Fishery Council, 17th Session, Colombo, Sri Lanka, 27 Oct-5 Nov, 1976, Section lll, Symposium on the development and utilization of inland fishery resources. FAO Regional Office for Asia and the Far East Bangkok, Thailand. p 310–12
- Han Y-S, Yambot AV, Zhang H, Hung C-L. (2012). Sympatric spawning but allopatric distribution of Anguilla japonica and Anguilla marmorata: Temperature- and oceanic current-dependent sieving. PLoS One 7:e37484
- Hebert PDN, Cywinska A, Ball SL, deWaard JR. (2003). Biological identifications through DNA barcodes. Proc R Soc Lond B Biol Sci 270:313–21
- Heinrichs S, O'Malley M, Medd H, Hilton P. (2011). Manta ray of hope: Global threat to manta and mobula rays. Manta ray of hope project. [online] Available at: www.mantarayofhope.com (Accessed 18 October 2013).
- Herre AW. (1953). Check list of Philippine fishes. Research Report U.S. Fish and Wildlife Service 20:977
- Holmes BH, Steinke D, Ward RD. (2009). Identification of shark and ray fins using DNA barcoding. Fish Res 95:280–8
- Homma K, Maruyama T, Itoh T, Ishihara H, Uchida S. (1999). Biology of the manta ray, Manta birostris Walbaum in the Indo-Pacific. In: Seret B, Sire JY, editors. Indo-Pacific Fsh Biology: Proc 5th Int Conf Indo-Pacific Fishes, Noumea, 1997. Paris, France: Ichthyol Soc. p 209–16
- Jamandre BWD, Shen KN, Yambot AV, Tzeng, WN. (2007). Molecular phylogeny of Philippine freshwater eels Anguilla spp. (Actinopterygi: Anguilliformes: Anguillidae) inferred from mitochondrial DNA. Raffles B Zool 14:51–9
- Kimura M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–20
- Ko H-L, Wang Y-T, Chiu T-S, Lee M-A, Leu M-Y, Ming-Yih Leu, Kuang-Zong Chang, et al. (2013). Evaluating the accuracy of morphological identification of larval fishes by applying dna barcoding. PLoS One 8:e53451
- Krishnamurthy PK, Francis RA. (2012). A critical review on the utility of DNA barcoding in biodiversity conservation. Biodiv Cons 21:1901–19
- Kyne PM, White WT. 2006. Taeniurops meyeni. In: IUCN 2013. IUCN Red List of Threatened Species. Version 2013.2. <www.iucnredlist.org> (Accessed 26 March 2014).
- Lack M, Sant G. (2012). An overview of shark utilisation in the Coral Triangle region. TRAFFIC & WWF. Available at: http://www.wwf.se/source.php/1496117/Shark%20coral%20triangle%202012.pdf (Accessed 26 March 2014)
- Lago FC, Vieites JM, Espiñeira M. (2012). Authentication of the most important species of freshwater eels by means of FINS. Eur Food Res Technol 234:689–94
- Maes GE, Volckaert FAM. (2007). Challenges for genetic research in European eel management. ICES J Marine Sci 64:1463–71
- Manjaji BM, White WT, Fahmi. (2009). Himantura fai. In: IUCN 2013. IUCN Red List of Threatened Species. Version 2013.2. Available at: <www.iucnredlist.org> (Accessed 27 March 2014).
- Maralit BA, Aguila RD, Ventolero MFH, Perez SKL, Willette DA, Santos MD. (2013). Detection of mislabelled commercial fishery by-products in the Philippines using DNA barcodes and its implications to food traceability and safety. Food Control 33:119–25
- Marshall AD, Compagno LJV, Bennett MB. (2009). Redescription of the genus Manta with resurrection of Manta alfredi (Krefft, 1868) (Chondrichthyes; Myliobatoidei; Mobulidae). Zootaxa 2301:1–28
- Mullon CF, Freon P, Cury P. (2005). The dynamics of collapse in world fisheries. Fish Fish 6:111–20
- Nijman V. (2010). An overview of international wildlife trade from Southeast Asia. Biol Cons 19:1101–14
- Pedrosa-Gerasmio IR, Babaran RP, Santos MD. (2012). Discrimination of juvenile yellowfin (Thunnus albacares) and bigeye (T. obesus) tunas using mitochondrial DNA control region and liver morphology. PLoS One 7:e35604
- Pfenninger M, Cordellier M, Streit B. (2006). Comparing the efficacy of morphologic and DNA-based taxonomy in freshwater gastropod genus Radix (Basommatophora, Pulmonata). BMC Evol Biol 6:100
- Rasmussen RS, Morrissey MT. (2008). DNA-based methods for the identification of commercial fish and seafood species. Compr Rev Food Sci F 7:280–95
- Rayos JCC, Santos MD, Barut NC. (2012). Status of devil ray resources in Bohol Sea, Philippines. Bangkok, Thailand: Fish for the People
- Reardon M, Márquez F, Trejo T, Clarke SC. (2009). Alopias pelagicus. In: IUCN 2013. IUCN Red List of Threatened Species. Version 2013.2. Available at: <www.iucnredlist.org> (Accessed 26 March 2014).
- Saitou N, Nei M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–25
- Sanciangco JC, Carpenter KE, Etnoyer PJ, Moretzsohn F. (2013). Habitat Availability and heterogeneity and the Indo-Pacific warm pool as predictors of marine species richness in the tropical Indo-Pacific. PLoS One 8:e56245
- Santos M, Lopez G, Barut N. (2010). A pilot study on the genetic variation of Eastern little tuna (Euthynnus affinis) in Southeast Asia. Philippine J Sci 139:43–50
- SEAFDEC. (2012). The Southeast Asian State of Fisheries and Aquaculture 2012. Bangkok, Thailand: Southeast Asian Fisheries Development Center
- Smith PJ, McVeagh SM, Steinke D. (2008). DNA barcoding for the identification of smoked fish products. J Fish Biol 72:464–71
- Sugeha HY, Suharti SR. (2009). Discrimination and distribution of two tropical short-finned eels (Anguilla bicolor bicolor and Anguilla bicolor pacifica) in the Indonesian Waters. Publications of the Seto Marine Biological Laboratory. Spec Publ Ser 9:1–14
- Tamura K, Dudley J, Nei M, Kumar S. (2007). MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4. Mol Biol Evol 24:1596–9
- Taylor HR, Harris WE. (2012). An emergent science on the brink of irrelevance: A review of the past 8 years of DNA barcoding. Mol Ecol Res 12:377–88
- Teng HY, Lin YS, Tzeng CS. (2009). A new Anguilla species and a reanalysis of the phylogeny of freshwater eels. Zool Stud 48:808–22
- Ward RD, Holmes BH, White WT, Last PR. (2008). DNA barcoding Australasian chondrichthyans: Results and potential uses in conservation. Marine Freshw Res 59:57–71
- White WT, Clark TB, Smith WD, Bizzarro JJ. (2006). Mobula japanica. In: IUCN 2013. IUCN Red List of Threatened Species. Version 2013.2. Available at: <www.iucnredlist.org> (Accessed 26 March 2014).
- Willette DA, Santos MD. (2012). Correcting widespread misidentifications of the highly abundant and commercially important sardine species Sardinella lemuru, Bleeker, 1853 in the Philippines. J Appl Ichthyol 29:881–5
- Willette DA, Santos MD, Aragon MA. (2011). First report of the Taiwan sardinella Sardinella hualiensis (Clupeiformes: Clupeidae) in the Philippines. J Fish Biol 79:2087–94