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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 27, 2016 - Issue 2
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Full length Research Paper

Genetic structure of populations and conservation issues relating to an endangered catfish, Clarias batrachus, in India

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Pages 1181-1187 | Received 16 Apr 2014, Accepted 13 Jul 2014, Published online: 08 Aug 2014

References

  • Ali J, Jonathan R, Aitchison C. (2005). Greater India. Earth-Sci Rev 72:170–3
  • Argungu LA, Christianus A, Amin SMN, Daud SK, Siraj SS, Aminur Rahman M. (2013). Asian catfish Clarias batrachus (Linnaeus, 1758) getting critically endangered. Asi J Ani Vet Adva 8:168–76
  • Avise JC. (1994). Molecular markers, natural history and evolution. New York: Chapman & Hall 511 pp
  • Ball RM, Avise JC. (1992). Mitochondrial DNA phylogeographic differentiation among avian populations and the evolutionary significance of subspecies. The Auk 109:626–36
  • Ballard JWO, Whitlock MC. (2004). The incomplete natural history of mitochondria. Mol Ecol 13:729–44
  • Birstein VJ, Ruban G, Ludwig A, Doukakis P, DeSalle R. (2005). The enigmatic Caspian Sea Russian sturgeon: How many cryptic forms does it contain? Syst Biodiv 3:203–18
  • Briggs JC. (2003). The biogeographic and tectonic history of India. J Biogeography 30:381–8
  • Brito PH. (2007). Contrasting patterns of mitochondrial and microsatellite genetic structure among western European populations of Tawny Owls (Strix aluco). Mol Ecol 16:3423–37
  • Burg TM, Croxall JP. (2001). Global relationships among black-browed and grey-headed albatrosses: Analysis of population structure using mitochondrial DNA and microsatellites. Mol Ecol 10:2647–60
  • Clement M, Posada D, Crandall KA. (2000). TCS: A computer program to estimate gene genealogies. Mol Ecol 9:1657–9
  • Craul M, Chikhi L, Sousa V, Olivieri G, Rabesandratana A, Zimmermann E, Radespiel U. (2009). Influence of forest fragmentation on an endangered large-bodied lemur in northwestern Madagascar. Biol Cons 142:2861–71
  • Debnath S. (2011). Clarias batrachus, the medicinal fish: An excellent candidate for aquaculture and employment generation. Proceedings of International Conference on Asia Agriculture an Animal, 2–3 July 2011, Hong Kong
  • Excoffier L, Laval G, Schneider S. (2005). Arlequin ver. 3.0: An integrated software package for population genetic data analysis. Evol Bioinfo Online 1:47–50
  • Excoffier L, Smouse P, Quattro J. (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131:479–91
  • Fu YX. (1997). Statistical neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915–25
  • Gershoni M, Templeton AR, Mishmar D. (2009). Mitochondrial bioenergetics as a major motive force of speciation. BioEssays 31:642–50
  • Goossens B, Chikhi L, Ancrenaz M, Lackman-Ancrenaz I, Andau P, Bruford MW. (2006). Genetic signature of anthropogenic population collapse in orangutans. PLoS Biol 4:285–91
  • Hillis DM, Moritz C, Mable BK. (1996). Molecular systematics. 2nd ed. Sunderland, MA: Sinauer Associates, Inc
  • Hoelzel AR. (1998). Molecular genetic analysis of populations: A practical approach. Oxford: Oxford University Press
  • Hooper DU, Chapin FS, Ewel JJ, Hector A, Inchausti P, Lavorel S, Lawton JH, et al. (2005). Effects of biodiversity on ecosystem functioning: A consensus of current knowledge. Eco Mono 75:3–35
  • Hossain Q, Hossain MA, Parween S. (2006). Artificial breeding and nursery practices of Clarias batrachus (Linnaeus, 1758). Sci World 4:32–7
  • IUCN (International Union for Conservation of Nature). (2007). Red List of Threatened Species, 2007. Available at: http://www.iucnredlist.org/
  • Khedkar GD, Reddy AC, Mann P, Ravinder K, Muzumdar K. (2009). C. batrachus (Linn.1758) population is lacking genetic diversity in India. Mol Biol Report 37:1355–62
  • Khedkar GD, Tiknaik AD, Shinde RN, Kalyankar AD, Ron TB, Haymer D. (2014a). High rates of substitution of the native catfish Clarias batrachus by Clarias gariepinus in India. Mitochondrial DNA. [Epub ahead of print]. doi:10.3109/19401736.2014.905863
  • Khedkar GD, Lutzky S, Rathod S, Kalyankar A, David L. (2014b). A dual role of dams in fragmentation and support of fish diversity across the Godavari River basin in India. Ecohydrology. [Epub ahead of print]
  • Kocher TD, Thomas WK, Meyers A, Edwards SV, Paabo S, Villablanca FX, Wilson AC. (1989). Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci USA 86:6196–200
  • Linnaeus C. (1758). Systema naturae per regna tria naturae, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis. Tomus I. Editio decima, reformata. Homiae: Laurentii Salvii
  • Ludwig A, Lippold S, Debus L, Reinartz R. (2009). First evidence of hybridization between endangered sterlets (Acipenser ruthenus) and exotic Siberian sturgeons (Acipenser baerii) in the Danube River. Biol Invasions 11:753–60
  • Lynch M, Crease TJ. (1990). The analysis of population survey data on DNA sequence variation. Mol Biol Evol 7:377–94
  • McCormack JE, Bowen BS, Smith TB. (2008). Integrating paleoecology and genetics of bird populations in two sky island archipelagos. BMC Biol 6:28
  • Nei M. (1987). Molecular evolutionary genetics. New York: Columbia University Press
  • Nei M, Kumar S. (2000). Molecular evolution and phylogenetics. New York: Oxford University Press
  • Olivieri GL, Sousa V, Chikhi L, Radespiel U. (2008). From genetic diversity and structure to conservation: Genetic signature of recent population declines in three mouse lemur species (Microcebus spp.). Biol Cons 141:1257–71
  • Posada D, Crandall KA. (2001). Evaluation of methods for detecting recombination from DNA sequences: Computer simulations. PNAS 98:13757–62
  • Quemere E, Louis E, Riberon A, Chikhi L, Crouau-Roy B. (2009). Non-invasive conservation genetics of the critically endangered golden-crowned sifaka (Propithecus tattersalli): High diversity and significant genetic differentiation over a small range. Cons Genet 11:675–87
  • Rogers AR, Harpending H. (1992). Population growth makes waves in the distribution of pairwise genetic differences. Mol Bio Evol 9:552–69
  • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R. (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496–7
  • Slatkin M, Hudson RR. (1991). Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555–62
  • Smith TB, Wayne RK (Eds). (1996). Molecular genetic approaches in conservation. New York: Oxford University Press
  • Sousa V, Penha F, Pala I, Chikhi L, Coelho M. (2009). Conservation genetics of a critically endangered Iberian minnow: Evidence of population decline and extirpations. Anim Conserv 13:162–71
  • Stephenson R, Kenchington E. (2000). Conserving fish stock structure is a critical aspect of preserving biodiversity. ICES CM Mini 7:7
  • Swenson NG, Howard DJ. (2004). Do suture zones exist? Evolution 58:2391–7
  • Tajima F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585–95
  • Thakur NK. (1996). A biological profile of African catfish Clarias gariepinus and impact of its introduction in Asia. Proceedings of Fish Genetics and Biodiversity Conservation. NATCON publication 05:315–22

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