Taxonomic status of the three color variants in sea cucumber (Apostichopus japonicus): evidence from mitochondrial phylogenomic analyses

References

• Avise JC. (2000). Phylogeography: The history and formation of species. Cambridge: Harvard University Press
   Google Scholar
• Borrero-Pérez GH, Gómez-Zurita J, González-Wangüemert M, Marcos C, Pérez-Ruzafa A. (2010). Molecular systematics of the genus Holothuria in the Mediterranean and Northeastern Atlantic and a molecular clock for the diversification of the Holothuriidae (Echinodermata: Holothuroidea). Mol Phylogenet Evol 57:899–906
   PubMed Web of Science ®Google Scholar
• Byrne M, Rowe F, Uthicke S. (2010). Molecular taxonomy, phylogeny and evolution in the family Stichopodidae (Aspidochirotida: Holothuroidea) based on COI and 16S mitochondrial DNA. Mol Phylogenet Evol 56:1068–81
   PubMed Web of Science ®Google Scholar
• Chang Y, Feng Z, Yu J, Ding J. (2009). Genetic variability analysis in five populations of the sea cucumber Stichopus (Apostichopus) japonicus from China, Russia, South Korea and Japan as revealed by microsatellite markers. Mar Ecol 30:455–61
   Web of Science ®Google Scholar
• Choe S. (1963). Biology of the Japanese common sea cucumber Stichopus japonicus Selenka. Pussan, Korea: Pusan National University
   Google Scholar
• Choe S, Ohshima Y. (1961). On the morphological and ecological differences between two commercial forms, “Green” and “Red”, of the Japan common sea cucumber, Stichopus japonicus Selenka. Bull Jpn Soc Sci Fish 27:97–106
   Google Scholar
• Drummond AJ, Rambaut A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214
   PubMed Web of Science ®Google Scholar
• Hall TA. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–8
   Google Scholar
• Hu MY, Li Q, Kong LF, Li L. (2009). Comparative study on juvenile growth of hybrids between Chinese and Japanese stocks of Sea Cucumber (Stichopus japonicus). Period Ocean Univ China 39:375–80
   Google Scholar
• Kang JH, Yu KH, Park JY, An CM, Jun JC, Lee SJ. (2011). Allele-specific PCR genotyping of the HSP70 gene polymorphism discriminating the green and red color variants sea cucumber (Apostichopus japonicus). J Genet Genomics 38:351–5
   PubMed Web of Science ®Google Scholar
• Kanno M, Kijima A. (2002a). High genetic variability of isozymes in Japanese sea cucumber Stichopus japonicus. Fish Genet Breed Sci 31:7–12
   Google Scholar
• Kanno M, Kijima A. (2002b). Quantitative and qualitative evaluation on the color variation of the Japanese sea cucumber Stichopus japonicus. Suisan Zoshoku 50:63–9
   Google Scholar
• Kanno M, Suyama Y, Li Q, Kijima A. (2006). Microsatellite analysis of Japanese sea cucumber, Stichopus (Apostichopus) japonicus, supports reproductive isolation in color variants. Mar Biotechnol 28:672–85
   Web of Science ®Google Scholar
• Kerr AM, Janies DA, Clouse RM, Samyn Y, Kuszak J, Kim J. (2005). Molecular phylogeny of coral-reef sea cucumbers (Holothuriidae: Aspidochirotida) based on 16S mitochondrial ribosomal DNA sequence. Mar Biotechnol 7:53–60
   PubMed Web of Science ®Google Scholar
• Nebelsick JH, Kroh A, Roth-Nebelsick A. (2012). The legacy of ocean climate and chemistry change in the echinoderm fossil record: A review. In: Johnson C, editor. Echinoderms in a changing world: Proceedings of the 13th International Echinoderm Conference, 5–9 January 2009. Hobart Tasmania, Australia: University of Tasmania, CRC Press
   Google Scholar
• Nylander JAA. (2004). MrModeltest v2. Program distributed by the author. Sweden: Evolutionary Biology Centre, Uppsala University
   Google Scholar
• Pisani D, Feuda R, Peterson KJ, Smith AB. (2012). Resolving phylogenetic signal from noise when divergence is rapid: A new look at the old problem of echinoderm class relationships. Mol Phylogenet Evol 62:27–34
   PubMed Web of Science ®Google Scholar
• Posada D. (2008). jModelTest: Phylogenetic model averaging. Mol Biol Evol 25:1253–6
   PubMed Web of Science ®Google Scholar
• Reich M. (2004). Aspidochirote holothurians (Echinodermata) from the Middle Triassic of Southern Germany. In: Heinzeller T, Nebelsick J, editors. Proceedings of the 11th International Echinoderm Conference. Netherlands: Balkema. p 485–6
   Google Scholar
• Sun XJ, Li Q, Kong LF, Yu RH. (2012). Embryonic, larval development and juvenile growth in hybrid between green (♂) and red (♀) Sea Cucumber Apostichopus japonicus. Period Ocean Univ China 42:26–32
   Google Scholar
• Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–9
   PubMed Web of Science ®Google Scholar
• Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–82
   PubMed Web of Science ®Google Scholar
• Xu X, Oda M. (1999). Surface-water evolution of the eastern East China Sea during the last 36,000 years. Mar Geol 156:285–304
   Web of Science ®Google Scholar
• Xue DX, Wang HY, Zhang T, Liu JX. (2014). Population genetic structure and demographic history of Atrina pectinata based on mitochondrial DNA and microsatellite markers. PLoS One 9:e95436
   PubMed Web of Science ®Google Scholar
• Zhang W, Kan SL, Zhao H, Li ZY, Wang XQ. (2014). Molecular phylogeny of tribe Theeae (Theaceae ss) and its implications for generic delimitation. PloS One 9:e98133
   PubMed Web of Science ®Google Scholar