Molecular diversity of some species belonging to the genus Daphnia O. F. Müller, 1785 (Crustacea: Cladocera) in Turkey

References

• Adamowicz SJ, Hebert PDN, Marinone MC. (2004). Species diversity and endemism in the Daphnia of Argentina: a genetic investigation. Zool J Linn Soc 140:171–2005.
   Web of Science ®Google Scholar
• Adamowicv SJ, Petrusek A, Colbourne JK, Hebert PDN, Witt JDS. (2009). The scale of divergence: A phylogenetic appraisal of intercontinental allopatric speciation in a passively dispersed freshwater zooplankton genus. Mol Phylogenet E 50:423–36.
   PubMed Web of Science ®Google Scholar
• Apaydın Yağcı M, Ustaoğlu MR. (2012). Zooplankton fauna of Lake İznik (Bursa, Turkey). Turk J Zool 36:341–50.
   Web of Science ®Google Scholar
• Bektaş Y, Beldüz O. (2008). Molecular phylogeny of Turkish Trachurus species (Perciformes: Carangidae) inferred from mitochondrial DNA analyses. J Fish Biol 73:1228–48.
   Web of Science ®Google Scholar
• Bendelt H, Froster P, Rohl A. (1999). Median joining network for inferring intraspecific phylogenies. Mol Biol E 16:37–48.
   PubMed Web of Science ®Google Scholar
• Benzie JAH. (2005). Cladocera: The genus Daphnia (including Daphniopsis) (Anomopoda: Daphniidae). In: Guides to the identification of the microinvertebrates of the continental waters of the world. Leiden, The Netherlands: Backhuys Publishers.
   Google Scholar
• Bilgin R. (2011). Back to the Suture: The distribution of intraspecific genetic diversity in and around anatolia. Int J Mol Sci 12:4080–103.
   PubMed Web of Science ®Google Scholar
• Bucklin A, Steinke D, Blanco-Bercial L. (2011). DNA barcoding of marine metazoa. Ann Rev Mar Sci 3:471–508.
   PubMed Web of Science ®Google Scholar
• Bulut H, Saler S. (2014). A checklist for zooplankton of eastern and southern Anatolia regions (Turkey). Düzce Univ J Sci Technol 2:36–47.
   Google Scholar
• Brandlova JZ, Brandl Z, Fernando CH. (1972). The Cladocera of Ontario with remarks on some species and distribution. Can J Zool 50:1373–403.
   Web of Science ®Google Scholar
• Carreras C, Pascual M, Cardona L, Aguilar A, Margaritoulis D, Rees A, Türkozan O, et al. (2007). The genetic structure of the loggerhead sea turtle (Caretta caretta) in the Mediterranean as revealed by nuclear and mitochondrial DNA and its conservation implications. Conserv Genet 8:761–75.
   Web of Science ®Google Scholar
• Colbourne JK, Hebert PDN. (1996). The systematics of North American Daphnia (Crustacea: Anomopoda): A molecular phylogenetic approach. Philos Trans R Soc Lond B: Biol Sci 351:349–60.
   PubMed Web of Science ®Google Scholar
• Colbourne JK, Wison CC, Hebert PDN. (2006). The systematics of Austalian Daphnia and Daphniopsis (Crustaceae: Cladocera): A shared phylogenetic history transformed by habitat-specific rates of evolution. Biol J Linn Soc 89:469–88.
   Web of Science ®Google Scholar
• Crease TJ. (1999). The complete sequence of the mitochondrial genom of Daphnia pulex (Cladocera: Crustaceae). Gene 233:89–99.
   PubMed Web of Science ®Google Scholar
• Crease TJ, Omilian AR, Costanzo KS, Taylor DJ. (2012). Transcontinental phylogeography of the Daphnia pulex species complex. PLoS One 7:1–11.
   Web of Science ®Google Scholar
• De Gelas K, De Meester L. (2005). Phylogeography of Daphnia magna in Europe. Mol Ecol 14:753–64.
   PubMed Web of Science ®Google Scholar
• Demirsoy A. (2002). Genel Zoocoğrafya ve Türkiye Zoocoğrafyası ‘Hayvan Coğrafyası’. Ankara, Turkey: Meteksan Press.
   Google Scholar
• Dorak Z, Albay M. (2015). A new rotifer species for Turkish inland waters. Limnofish 1:89–94.
   Google Scholar
• Dufresne F. (2011). The history of the Daphnia pulex complex: asexuality, hybridization, and polyploidy. In: dans Koenemann S, Held C, Schubart C, editors. Phylogeography and population genetics in Crustaceans. CRC Press. p. 217–32.
   Google Scholar
• Duggan IC, Robinson KV, Burns CW, Banks JC, Hogg ID. (2012). Identifying invertebrate invasions using morphological and molecular analyses: North American Daphnia pulex in New Zealand fresh waters. Aquat Invasions 7:585–90.
   Web of Science ®Google Scholar
• Felsenstein J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783–91.
   PubMed Web of Science ®Google Scholar
• Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Marine Biol Biotechnol 3:294–9.
   PubMedGoogle Scholar
• Galimov Y, Walser B, Haag CR. (2011). Frequency and inheritance of non-male producing clones in Daphnia magna: Evolution towards sex specialization in a cyclical parthenogen? J Evol Biol 24:1572–83.
   PubMed Web of Science ®Google Scholar
• Gündüz İ, Tez C, Malıkov V, Vazırı A, Polyakov AV, Searle JB. (2000). Mitochondrial DNA and chromosomal studies of wild mice (Mus) from Turkey and Iran. Heredity 84:458–67.
   PubMed Web of Science ®Google Scholar
• Günsel S, Akbulut N. (2012). The investigation of the zooplanktonic organisms of Delice River and its arms in Kızılırmak River Basin (Turkey). Hacettepe J Biol Chem (Spec Iss) 40:309–16.
   Google Scholar
• Hall TA. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–8.
   Google Scholar
• Hebert PDN, Schwartz SS, Ward RD. (1993). Macrogeographic patterns of breeding system diversity in the Daphnia pulex group. I. Breeding systems of Canadian populations. Heredity 70:148–61.
   Web of Science ®Google Scholar
• Hebert PDN, Witt JDS, Adomowics SJ. (2003). Phylogeographic patterning in Daphnia ambigua: regional divergence and intercontinental cohesion. Limnol Oceanogr 48:261–8.
   Web of Science ®Google Scholar
• Hillis DM, Bull JJ. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analyses. Syst Biol 42:182–92.
   Web of Science ®Google Scholar
• Hrbacek J. (1959). Über die angebliche Variabilitat von Daphnia pulex Leydig. Zool Anz 162:116–26.
   Google Scholar
• Ishıda S, Kotov AA, Taylor DJ. (2006). A new divergent lineage of Daphnia (Cladocera: Anomopoda) and its morphological and geneticel differentiation from Daphnia curvirostris Eylmann, 1887. Zool J Linn Soc 146:385–405.
   Web of Science ®Google Scholar
• Juracka PJ, Korinek V, Petrusek A. (2010). A new Central European species of the Daphnia curvirostris complex, Daphnia hrbaceki sp. nov. (Cladocera, Anomopoda, Daphniidae). Zootaxa 2718:1–22.
   Google Scholar
• Kandemir I, Kence M, Sheppard WS, Kence A. (2006). Mitochondrial DNA variation in honey bee (Apis mellifera L.) populations from Turkey. J Apicult Res 45:33–8.
   Web of Science ®Google Scholar
• Kaya M, Altındağ A. (2007). Some cladoceran species from Turkish ınland water. Süleyman Demirel Univ J Sci 2:60–76.
   Google Scholar
• Kaya M, Yıldız MA. (2008). Genetic diversity among Turkish native chickens, Denizli and Gerze, estimated by microsatellite markers. Biochem Genet 46:480–91.
   PubMed Web of Science ®Google Scholar
• Kaya M, Altındağ A. (2010). Ten additions to the rotifer fauna of Turkey. Turk J Zool 34:195–202.
   Web of Science ®Google Scholar
• Kimura M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–20.
   PubMed Web of Science ®Google Scholar
• Knowlton N, Weigt LA. (1998). New dates and new rates for divergence across the Isthmus of Panama. Proc R Soc Lon B 265:2257–63.
   Web of Science ®Google Scholar
• Kosswig C. (1955). Zoogeography of the Near East. Syst Zool 4:49–73.
   Google Scholar
• Kotov AA. (2015). Critical review of the current taxonomy of the genus Daphnia O. F. Müller, 1785 (Anomopoda, Cladocera). Zootaxa 3911:184–200.
   PubMed Web of Science ®Google Scholar
• Kotov AA, Taylor DJ. (2010). A new African lineage of the Daphnia obtusa group (Cladocera: Daphniidae) disrupts continental vicariance patterns. J Plankton Res 32:937–49.
   Web of Science ®Google Scholar
• Librado P, Rozas J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–2.
   PubMed Web of Science ®Google Scholar
• Ma X, Petrusek A, Wolinska J, Gıebler S, Zhong Y, Yang Z, Hu W, Yın M. (2015). Diversity of the Daphnia longispina species complex in Chinese lakes: A DNA taxonomy approach. J Plankton Res 37:56–65.
   Web of Science ®Google Scholar
• Markova S, Dufrense F, Rees DJ, Cerny M, Kotlik P. (2007). Cryptic intercontinental colonization in water fleas Daphnia pulicaria inferred from phylogenetic analysis of mitochondrial DNA variation. Mol Phylogenet Evol 44:42–52.
   PubMed Web of Science ®Google Scholar
• Mergeay J, Aguilera X, Declerck S, Petrusek A, Husye T, De Meester L. (2008). The genetic legacy of polyploid Bolivian Daphnia: The tropical Andes as a source for the North and South American D. pulicaria complex. Mol Ecol 17:1789–800.
   PubMed Web of Science ®Google Scholar
• Orsini L, Mergeay J, Vanoverbeke J, De Meester L. (2013). The role of selection in driving landscape genomic structure of the waterflea Daphnia magna. Mol Ecol 22:583–601.
   PubMed Web of Science ®Google Scholar
• Özdil F, İlhan F. (2012). Diversity of Apis mellifera subspecies from Turkey revealed by sequence analysis of mitochondrial 16s rDNA region. Biochem Genet 50:748–60.
   PubMed Web of Science ®Google Scholar
• Penton E, Hebert PDN, Crease TJ. (2004). Mitochondrial DNA variation in North American populations of Daphnia obtusa: Continentalism or cryptic endemism? Mol Ecol 13:97–107.
   PubMed Web of Science ®Google Scholar
• Perktaş U, Quintero E. (2013). A wide geographical survey of mitochondrial DNA variation in the great spotted woodpecker complex, Dendrocopos major (Aves: Picidae). Biol J Linn Soc 108:173–88.
   Web of Science ®Google Scholar
• Posada D, Crandall KA. (1998). MODELTEST: Testing the model of DNA substitution. Bioinformatics 14:817–18.
   PubMed Web of Science ®Google Scholar
• Rambaut A. (2009). Molecular evolution, phylogenetics and epidemiology. Fig Tree. Available at http://tree.bio.ed.ac.uk/software/figtree/
   Google Scholar
• Ronquist F, Huelsenbeck JP. (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–4.
   PubMed Web of Science ®Google Scholar
• Saler S, İpek N. (2009). Cladocera and Copepoda (Crustacea) fauna of Seli Stream (Elazığ-Turkey). J Fish Sci 3:318–22.
   Google Scholar
• Sambrook JF, Russel DW. (2001). Molecular cloning: A laboratory manual (3rd edn). New York: Cold Spring Harbor Laboratory Press.
   Google Scholar
• Sanger FNS, Nicklen S, Coulson AR. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–7.
   PubMed Web of Science ®Google Scholar
• Schwenk K, Posada D, Hebert PDN. (2000). Molecular systematics of European Hyalo Daphnia: The role of contemporary hybridization in ancient species. Proc Biol Sci 267:1833–42.
   PubMed Web of Science ®Google Scholar
• Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–9.
   PubMed Web of Science ®Google Scholar
• Taylor DJ, Hebert PDN, Colbourne JK. (1996). Phylogenetics and evolution of the Daphnia longispina group (Crustacea) based on 12S rDNA sequence and allozyme variation. Mol Phylogenet Evol 5:495–510.
   PubMed Web of Science ®Google Scholar
• Tellioğlu A, Şen D. (2001). Hazar Gölü (Elazığ) Copepoda ve Cladocera Faunasının Mevsimsel Dağılımı. G.Ü. Gazi Eğitim Fakültesi Dergisi 21:7–18.
   Google Scholar
• Ustaoğlu MR. (2004). A check-list for zooplankton of Turkish ınland waters. EgeJFAS 21:191–9.
   Google Scholar
• Vergilino R, Markova S, Ventura M, Manca M, Dufresne F. (2011). Reticulate evolution of the Daphnia pulex complex as revealed by nuclear markers. Mol Ecol 20:1191–207.
   PubMed Web of Science ®Google Scholar
• Yalım FB, Çıplak B. (2008). Yeşil Göl’ün (Antalya, Türkiye) Cladocera ve Copepoda (Crustacea) Faunası ile Populasyon Yoğunluğundaki Mevsimsel Değişimler. E.Ü. Su Ürünleri Dergisi 25:239–43.
   Google Scholar
• Yang Z, Rannala B. (1997). Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method. Mol Biol Evol 14:717–24.
   PubMed Web of Science ®Google Scholar
• Yıldız Ş, Özgökçe MS, Özgökçe F, Karaca İ, Polat E. (2010). Zooplankton composition of Van Lake Coastline in Turkey. Afr J Biotechnol 9:8248–52.
   Google Scholar
• Yiğit S, Altındağ A. (2005). A Taxonomical study on the zooplankton fauna of Hirfanlı Dam Lake (Kırşehir), Turkey. Gujs 18:563–7.
   Google Scholar
• Zuykova EI, Bochkarev NA, Katokhin AV. (2013a). Molecular genetic identification and phylogeny of Daphnia species (Crustacea, Cladocera) from water bodies of the Lake Chany basin. Russ J Genet 49:206–13.
   Web of Science ®Google Scholar
• Zuykova EI, Bochkarev NA, Katokhin AV. (2013b). Identification of the Daphnia species (Crustacea: Cladocera) in the lakes of the Ob and Yenisei River basins: Morphological and molecular phylogenetic approaches. Hydrobiologia 715:135–50.
   Web of Science ®Google Scholar