Publication Cover
Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 28, 2017 - Issue 4
262
Views
1
CrossRef citations to date
0
Altmetric
Research Article

Chloroplast based genetic diversity among Chinese grapes genotypes

, , , &
Pages 565-569 | Received 16 Dec 2015, Accepted 13 Feb 2016, Published online: 29 Mar 2016

References

  • Arroyo-García R, Lefort F, Teresa de Andrés M, Ibáñez J, Borrego J, Jouve N, Cabello F, Miguel Martínez-Zapater J. 2002. Chloroplast microsatellite polymorphisms in Vitis species. Genome. 45:1142–1149.
  • Bassam BJ, Caetano-Anollés G, Gresshoff PM. 1991. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem.196:80–83.
  • Bonen L, Salmaso M, Dalla Valle R, Lucchin M. 2008. Gene pool variation and phylogenetic relationships of an indigenous northeast Italian grapevine collection revealed by nuclear and chloroplast SSRs. Genome. 51:838–855.
  • Bouhadida M, Martín JP, Eremin G, Pinochet J, Moreno MÁ, Gogorcena Y. 2007. Chloroplast DNA diversity in Prunus and its implication on genetic relationships. J Am Soc Hortic Sci. 132:670–679.
  • Bryan GJ, McNicoll J, Ramsay G, Meyer RC, De Jong WS. 1999. Polymorphic simple sequence repeat markers in chloroplast genomes of Solanaceous plants. Theor Appl Genet. 99:859–867.
  • Castro I, Pinto-Carnide O, María Ortiz J, Pedro Martín J. 2013. Chloroplast genome diversity in Portuguese grapevine (Vitis vinifera L.) cultivars. Mol Biotechnol. 54:528–540.
  • Cheng FS, Brown SK, Weeden NF. 1997. A DNA extraction protocol from various tissues in woody species. HortScience. 32:921–922.
  • Cheng Y, Carmen De Vicente M, Meng H, Guo W, Tao N, Deng X. 2005. A set of primers for analyzing chloroplast DNA diversity in citrus and related genera. Tree Physiol. 25:661–672.
  • Clegg JS. 2001. Cryptobiosis—a peculiar state of biological organization. Comp Biochem Physiol B Biochem Mol Biol. 128:613–624.
  • Cunha J, Teixeira Santos M, Carneiro LC, Fevereiro P, Eiras-Dias JE. 2009. Portuguese traditional grapevine cultivars and wild vines (Vitis vinifera L.) share morphological and genetic traits. Genet Resour Crop Evol. 56:975–989.
  • Doulaty BH, Mohammadi SA, Labra M, Nazemieh A, De Mattia F, Mardi M. 2007. Chloroplast microsatellites markers to assess genetic diversity in wild and cultivated grapevines of Iran. Pak J Biol Sci. 10:1855–1859.
  • Duran C, Appleby N, Edwards D, Batley J. 2009. Molecular genetic markers: discovery, applications, data storage and visualisation. Curr Bioinform. 4:16–27.
  • Green RM, Vardi A, Galun E. 1986. The plastome of citrus. Physical map, variation among citrus cultivars and species and comparison with related genera. Theor Appl Genet. 72:170–177.
  • Hao CY, Zhang XY, Wang LF, Dong YS, Shang XW, Jia JZ. 2006. Genetic diversity and core collection evaluations in common wheat germplasm from the Northwestern Spring Wheat Region in China. Mol Breed. 17:69–77.
  • Imazio S, Labra M, Grassi F, Scienza A, Failla O. 2006. Chloroplast microsatellites to investigate the origin of grapevine. Genet Resour Crop Evol. 53:1003–1011.
  • Jansen RK, Kaittanis C, Saski C, Lee S-B, Tomkins J, Alverson AJ, Daniell H. 2006. Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids. BMC Evol Biol. 6:32.
  • Jing ZB, Wang XP, Cheng JM. 2013. Analysis of genetic diversity among Chinese wild Vitis species revealed with SSR and SRAP markers. Genet Mol Res. 12:1962–73.
  • Lacis G, Rashal I, Ruisa S, Trajkovski V, Iezzoni AF. 2009. Assessment of genetic diversity of Latvian and Swedish sweet cherry (Prunus avium L.) genetic resources collections by using SSR (microsatellite) markers. Sci Hortic. 121:451–457.
  • Liu C, Fan X, Jiang J, Guo D, Sun H, Zhang Y, Feng J. 2012. Genetic diversity of Chinese wild grape species by Ssr and Srap markers. Biotechnol Biotechnol Equip. 26:2899–2903.
  • Liu L, Zhu X, Gong Y, Song X, Wang Y, Zhao L, Wang L. 2007. Genetic diversity analysis of radish germplasm with RAPD, AFLP and SRAP markers. Acta Hortic. 760:125–130.
  • Liu SJ, Kong QS, Gu H. 1997. “Studies on the taxonomy of wild grape species native to china by the palynolog, Guoshu Kexue“. J Fruit Sci. 14:100–105.
  • Luo S, He P, Zheng X, Zhou P. 2000. “Genetic diversity in wild grapes native to China based on randomly amplified polymorphic DNA (RAPD) analysis”. Acta Bota Sin. 43:158–163.
  • Moore MJ, Bell CD, Soltis PS, Soltis DE. 2007. “Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms”. Proc Natl Acad Sci. 104:19363–19368.
  • Moreira FM, Madini A, Marino R, Zulini L, Stefanini M, Velasco R, Kozma P, Stella Grando M. 2011. “Genetic linkage maps of two interspecific grape crosses (Vitis spp.) used to localize quantitative trait loci for downy mildew resistance”. Tree Gen Genomes. 7:153–167.
  • Nei M, Li W-H. 1979. “Mathematical model for studying genetic variation in terms of restriction endonucleases”. Proc Natl Acad Sci USA. 76:5269–5273.
  • Nicolosi E, Deng ZN, Gentile A, La Malfa S, Continella G, Tribulato E. 2000. “Citrus phylogeny and genetic origin of important species as investigated by molecular markers”. Theor Appl Genet. 100:1155–1166.
  • Powell W, Machray GC, Provan J. 1996. “Polymorphism revealed by simple sequence repeats”. Trends Plant Sci. 1:215–222.
  • Santana JC, Heuertz M, Arranz C, Antonio Rubio J, Martínez-Zapater JM, Hidalgo E. 2010. “Genetic structure, origins, and relationships of grapevine cultivars from the Castilian plateau of Spain”. Am J Enol Viticult. 61:214–224.
  • Shi C, Hu N, Huang H, Gao J, Zhao Y-J, Gao L-Z. 2012. “An improved chloroplast DNA extraction procedure for whole plastid genome sequencing”. PLoS One 7:e31468.
  • Snoussi H, Harbi Ben Slimane M, Ruiz-García L, Martínez-Zapater JM, Arroyo-García R. 2004. “Genetic relationship among cultivated and wild grapevine accessions from Tunisia”. Genome. 47:1211–1219.
  • Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS. 2011. “Angiosperm phylogeny: 17 genes, 640 taxa”. Am J Bota. 98:704–730.
  • This P, Lacombe T, Thomas MR. 2006. “Historical origins and genetic diversity of wine grapes”. Trends Genet. Gene. 22:511–519.
  • Tröndle H, Strafgesetzbuch Fischer T. 2010. “Nebengesetze. 57.” München: Aufl Verlag CH Beck.
  • Turkoglu Z, Bilgener S, Ercisli S, Bakir M, Koc A, Akbulut M, Gercekcioglu R, Gunes M, Esitken A. 2010. “Simple sequence repeat-based assessment of genetic relationships among Prunus rootstocks”. Genet Mol Res. 9:2156–2165.
  • Vaiman D, Mercier D, Moazami-Goudarzi K, Eggen A, Ciampolini R, Lépingle A, Velmala R, Kaukinen J, Varvio S-L, Martin P. 1994. “A set of 99 cattle microsatellites: characterization, synteny mapping, and polymorphism”. Mammalian Genome. 5:288–297.
  • Wang W, Wu Y, Messing J. 2012. “The mitochondrial genome of an aquatic plant, Spirodela polyrhiza”. PLoS One. 7:e46747.
  • Wang Y,-h, WANG H, Gao L. 2002. “Study on genetic diversity of Oryza ruf} pogon Griff. by sanple seqence repeat”. Acta Bota Boreali-Occidentalia Sin. 23:1750–1754.
  • Wang Y, Guo J, Zhao G. 2011. “Chloroplast microsatellite diversity of Clintonia udensis(Liliaceae) populations in East Asia”. Biochem System Ecol. 39:22–30.
  • Weising K, Gardner RC. 1999. “A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms”. Genome. 42:9–19.
  • Xie W-G, Zhang X-Q, Cai H-W, Liu W, Peng Y. 2010. “Genetic diversity analysis and transferability of cereal EST-SSR markers to orchardgrass ( Dactylis glomerata L.)”. Biochem Systemat Ecol. 38:740–749.
  • Xuan J-p, Zhou Z-f, Liu J-x, Guo H-l. 2008. “SSR Analysis on Inter-species Relationships in Zoysia Willd”. Acta Bota Boreali-Occidentalia Sin. 28:249.
  • Zeng C-L, Wang G-Y, Wang J-B, Yan G-X, Chen B-Y, Xu K, Li J, Gao G-Z, Wu X-M, Zhao B. 2012. “High-Throughput Discovery of Chloroplast and Mitochondrial DNA Polymorphisms in Brassicaceae Species by ORG-EcoTILLING”. PLoS One. 7:e47284.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.