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Original Research Articles

Genetic diversity and antibiogram profile of diarrhoeagenic Escherichia coli pathotypes isolated from human, animal, foods and associated environmental sources

, MVSc, , MVSc, , MVSc, , PhD, , MVSc, , MVSc, , PhD, , PhD, , PhD, , PhD & , PhD show all
Article: 31055 | Received 19 Jan 2016, Accepted 12 Apr 2016, Published online: 18 May 2016

References

  • Liu L, Hope LJ, Simon C, Jamie P, Susana S, Joy EL, etal. Global, regional, and national causes of child mortality: an updated systematic analysis for 2010 with time trends since 2000. Lancet. 2010; 379: 2151–61.
  • Puño-Sarmiento J, Medeiros L, Chiconi C, Martins F, Pelayo J, Rocha S, etal. Detection of diarrheagenic Escherichia coli strains isolated from dogs and cats in Brazil. Vet Microbiol. 2013; 166: 676–80.
  • Shabana II, Zaraket H, Suzuki H. Molecular studies on diarrhoea-associated Escherichia coli isolated from humans and animals in Egypt. Vet Microbiol. 2013; 167: 532–9. [PubMed Abstract].
  • Chen Y, Chen X, Zheng S, Yu F, Kong H, Yang Q, etal. Serotypes, genotypes and antimicrobial resistance patterns of human diarrhoeagenic Escherichia coli isolates circulating in southeastern China. Clin Microbiol Infect. 2014; 20: 52–8. [PubMed Abstract].
  • Bautista-De León H, Gómez-Aldapa CA, Rangel-Vargas E, Vázquez-Barrios E, Castro-Rosas J. Frequency of indicator bacteria, Salmonella and diarrhoeagenic Escherichia coli pathotypes on ready-to-eat cooked vegetable salads from Mexican restaurants. Lett Appl Microbiol. 2013; 56: 414–20.
  • Farooq S, Hussain I, Mir MA, Bhat MA, Wani SA. Isolation of atypical enteropathogenic Escherichia coli and Shiga toxin 1 and m2f producing Escherichia coli from avian species in India. Lett Appl Microbiol. 2009; 48: 692–7. [PubMed Abstract].
  • Wellington EMH, Boxall ABA, Cross P, Feil EJ, Gaze WH, Hawkey PM, etal. The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria. Lancet Infect Dis. 2013; 13: 155–65. [PubMed Abstract].
  • Tadesse DA, Zhao S, Tong E, Ayers S, Singh A, Bartholomew MJ, etal. Antimicrobial drug resistance in Escherichia coli from humans and food animals, United States, 1950–2002. Emerg Infect Dis. 2012; 18: 741–9. [PubMed Abstract] [PubMed CentralFull Text].
  • UNICEF/World Health Organization. Diarrhoea: why children are still dying and what can be done. 2009. Available from: http://www.who.int/ topics/diarrhoea/en/ [cited 7 February 2014]..
  • Brenner DJ, Krieg NR, Staley JR. GM Garrity. The Gammaproteobacteria. Bergey's manual of systematic bacteriology. 2005; New York: Springer. 1106. 2nd vol.
  • Cheesbrough M. Medical laboratory manual for tropical countries. Microbiology. 1985; II: 400–80.
  • Kudva IT, Evans PS, Perna NT, Barrett TJ, DeCastro GJ, Ausubel FM, etal. Polymorphic amplified typing sequences provide a novel approach to Escherichia coli O157:H7 strain typing. J Clin Microbiol. 2002; 40: 1152–59. [PubMed Abstract] [PubMed CentralFull Text].
  • Nishikawa Y, Zhou Z, Hase A, Ogasawara J, Kitase T, Abe N, etal. Diarrhoeagenic Escherichia coli isolated from stools of sporadic cases of diarrhoeal illness in Osaka city, Japan between 1997 and 2000: prevalence of enteroaggregative E. coli heat-stable enterotoxin 1 gene-possessing E. coli . J Infect Dis. 2002; 55: 182–90.
  • Jenkins C, Chart H, Willshaw GA. Genotyping of enteroaggregative Escherichia coli and identification of target genes for the detection of both typical and atypical strains. Diagn Microbiol Infect Dis. 2006; 55: 13–19. [PubMed Abstract].
  • Tokuda K, Nishi J, Imuta N, Fujiyama R, Kamenosono A, Manago K, etal. Characterization of typical and atypical enteroaggregative Escherichia coli in Kagoshima, Japan: biofilm formation and acid resistance. Microbiol Immunol. 2010; 54: 320–9. [PubMed Abstract].
  • Vergis J. Prevalence of diarrhoeagenic Escherichia coli pathotypes in human infants and young animals having diarrhoea (dissertation). 2013; Izatnagar, India: Indian Veterinary Research Institute. 99.
  • Vijay D, Dhaka P, Vergis J, Negi M, Mohan V, Kumar M, etal. Characterization and biofilm forming ability of diarrhoeagenic enteroaggregative Escherichia coli isolates recovered from human infants and young animals. Comp Immunol Microbiol Infect Dis. 2015; 38: 21–31. [PubMed Abstract].
  • CDC. Standard operating procedure for PulseNet PFGE of E. coli O157:H7, E. coli non-O157 (STEC), Salmonella serotypes, Shigella sonnei, and Shigella flexneri. 2013. Available from: http://www. cdc. gov/pulsenet/ PDF/ e.coli-shigella-salmonella-pfge-protocol-508c.pdf [cited 21 March 2014]..
  • CLSI. Performance standards for antimicrobial susceptibility testing: seventeenth informational supplement, M100–S23. 2013; Pennsylvania, PA: Clinical and Laboratory Standards Institute. 200.
  • Dutta S, Guin S, Ghosh S, Pazhani GP, Rajendran K, Bhattacharya MK, etal. Trends in the prevalence of diarrheagenic Escherichia coli among hospitalized diarrheal patients in Kolkata, India. PLoS One. 2013; 8: e56068. [PubMed Abstract] [PubMed CentralFull Text].
  • Croxen MA, Law RJ, Scholz R, Keeney KM, Wlodarska M, Finlay BB. Advances in understanding enteric pathogenic Escherichia coli. Clin Microbiol Rev. 2013; 26: 822–80. [PubMed Abstract] [PubMed CentralFull Text].
  • Estrada-Garcia T, Navarro-Garcia F. Enteroaggregative Escherichia coli pathotype: a genetically heterogeneous emerging foodborne enteropathogen. FEMS Immunol Med Microbiol. 2012; 66: 1–18.
  • Huang DB, Mohanty A, DuPont HL, Okhuysen PC, Chiang T. A review of an emerging enteric pathogen: enteroaggregative Escherichia coli. J Med Microbiol. 2006; 55: 1303–11. [PubMed Abstract].
  • Bouzari S, Jafari A, Zarepour M. Distribution of virulence related genes among enteroaggregative Escherichia coli isolates: using multiplex PCR and hybridization. Infect Genet Evol. 2005; 5: 79–83. [PubMed Abstract].
  • Tenover FC, Arbeit RD, Goering RV, Mickelsen PA, Murray BE, Persing DH, etal. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol. 1995; 33: 2233–9. [PubMed Abstract] [PubMed CentralFull Text].
  • Goering RV, Fey PD. Pulsed field gel electrophoresis of Staphylococcus epidermidis. Methods Mol Biol. 2014; 1106: 55–60. [PubMed Abstract].
  • Weiner M, Dacko J, Osek J. Molecular analysis of enterotoxigenic, Shiga toxigenic and enteroaggregative Escherichia coli strains isolated from suckling piglets with diarrhoea by the use of pulsed-field electrophoresis. Bull Vet Inst Pulawy. 2004; 48: 225–32.
  • Adachi JA, Jiang ZD, Mathewson JJ, Verenkar MP, Thompson S, Martinez-Sandoval F. Enteroaggregative Escherichia coli as a major etiologic agent in traveler's diarrhoea in 3 regions of the world. Clin Infect Dis. 2001; 32: 1706–9. [PubMed Abstract].
  • Rump LV, Bodeis-Jones S, Abbott JS, Kase J, Lorenz S, Fischer M, etal. Genetic characterization of Escherichia coli O104 isolates from different sources in the United States. Appl Environ Microbiol. 2011; 78: 1615–18. [PubMed Abstract].
  • Erb A, Stürmer T, Marre R, Brenner H. Prevalence of antibiotic resistance in Escherichia coli: overview of geographical, temporal, and methodological variations. Eur J Clin Microbiol Infect Dis. 2007; 26: 83–90. [PubMed Abstract].
  • Raju B, Ballal M. Multidrug resistant enteroaggregative Escherichia coli diarrhoea in rural southern Indian population. Scand J Infect Dis. 2009; 41: 105–8. [PubMed Abstract].
  • Vaishnavi C, Kaur S. The epidemiological and resistogram patterns of enteropathogenic and enterotoxigenic Escherichia coli isolated from diarrhoeal stools in a north Indian hospital. Trop Gastroenterol. 2003; 24: 70–2. [PubMed Abstract].
  • Chigor VN, Umoh VJ, Smith SI, Igbinosa EO, Okoh AI. Multidrug resistance and plasmid patterns of Escherichia coli O157 and other E. coli isolated from diarrhoeal stools and surface waters from some selected sources in Zaria, Nigeria. Int J Environ Res Public Health. 2010; 7: 3831–41. [PubMed Abstract] [PubMed CentralFull Text].
  • Samal SK, Khuntia HK, Nanda PK, Satapathy CS, Nayak SR, Sarangi AK, etal. Incidence of bacterial enteropathogens among hospitalized diarrhea patients from Orissa, India. Jpn J Infect Dis. 2008; 61: 350–5. [PubMed Abstract].