2,144
Views
54
CrossRef citations to date
0
Altmetric
Original Articles

Salivary bacterial fingerprints of established oral disease revealed by the Human Oral Microbe Identification using Next Generation Sequencing (HOMINGS) technique

, , , &
Article: 30170 | Received 26 Oct 2015, Accepted 18 Dec 2015, Published online: 14 Jan 2016

References

  • Jenkinson HF, Lamont RJ. Oral microbial communities in sickness and in health. Trends Microbiol. 2005; 13: 589–95.
  • Wade WG. The oral microbiome in health and disease. Pharmacol Res. 2013; 69: 137–43.
  • Pihlstrom BL, Michalowicz BS, Johnson NW. Periodontal diseases. Lancet. 2005; 366: 1809–20.
  • Takahashi N, Nyvad B. The role of bacteria in the caries process: ecological perspectives. J Dent Res. 2011; 90: 294–303.
  • Teles R, Teles F, Frias-Lopez J, Paster B, Haffajee A. Lessons learned and unlearned in periodontal microbiology. Periodontol 2000. 2013; 62: 95–162.
  • Paster BJ, Dewhirst FE. Molecular microbial diagnosis. Periodontol 2000. 2009; 51: 38–44.
  • Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, etal. The human oral microbiome. J Bacteriol. 2010; 192: 5002–17.
  • Colombo AP, Boches SK, Cotton SL, Goodson JM, Kent R, Haffajee AD, etal. Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray. J Periodontol. 2009; 80: 1421–32.
  • Preza D, Olsen I, Willumsen T, Boches SK, Cotton SL, Grinde B, etal. Microarray analysis of the microflora of root caries in elderly. Eur J Clin Microbiol Infect Dis. 2009; 28: 509–17.
  • Torlakovic L, Klepac-Ceraj V, Ogaard B, Cotton SL, Paster BJ, Olsen I. Microbial community succession on developing lesions on human enamel. J Oral Microbiol. 2012; 4: 16125. http://dx.doi.org/10.3402/jom.v4i0.16125.
  • Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, etal. Deep sequencing of the oral microbiome reveals signatures of periodontal disease. PLoS One. 2012; 7: e37919.
  • Griffen AL, Beall CJ, Campbell JH, Firestone ND, Kumar PS, Yang ZK, etal. Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing. ISME J. 2012; 6: 1176–85.
  • Crielaard W, Zaura E, Schuller AA, Huse SM, Montijn RC, Keijser BJ. Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health. BMC Med Genomics. 2011; 4: 22.
  • Schulze-Schweifing K, Banerjee A, Wade WG. Comparison of bacterial culture and 16S rRNA community profiling by clonal analysis and pyrosequencing for the characterization of the dentine caries-associated microbiome. Front Cell Infect Microbiol. 2014; 4: 164.
  • Obata J, Takeshita T, Shibata Y, Yamanaka W, Unemori M, Akamine A, etal. Identification of the microbiota in carious dentin lesions using 16S rRNA gene sequencing. PLoS One. 2014; 9: e103712.
  • Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, Gevers D, etal. Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol. 2012; 13: R42.
  • Paju S, Pussinen PJ, Suominen-Taipale L, Hyvonen M, Knuuttila M, Kononen E. Detection of multiple pathogenic species in saliva is associated with periodontal infection in adults. J Clin Microbiol. 2009; 47: 235–8.
  • Yang F, Zeng X, Ning K, Liu KL, Lo CC, Wang W, etal. Saliva microbiomes distinguish caries-active from healthy human populations. ISME J. 2012; 6: 1–10.
  • Belstrom D, Fiehn NE, Nielsen CH, Kirkby N, Twetman S, Klepac-Ceraj V, etal. Differences in bacterial saliva profile between periodontitis patients and a control cohort. J Clin Periodontol. 2014; 41: 104–12.
  • Belstrom D, Fiehn NE, Nielsen CH, Holmstrup P, Kirkby N, Klepac-Ceraj V, etal. Altered bacterial profiles in saliva from adults with caries lesions: a case-cohort study. Caries Res. 2014; 48: 368–75.
  • Belstrom D, Fiehn NE, Nielsen CH, Klepac-Ceraj V, Paster BJ, Twetman S, etal. Differentiation of salivary bacterial profiles of subjects with periodontitis and dental caries. J Oral Microbiol. 2015; 7: 27429. , doi: http://dx.doi.org/10.3402/jom.v7.27429.
  • Lazarevic V, Whiteson K, Gaia N, Gizard Y, Hernandez D, Farinelli L, etal. Analysis of the salivary microbiome using culture-independent techniques. J Clin Bioinforma. 2012; 2: 4.
  • Lazarevic V, Gaia N, Girard M, Francois P, Schrenzel J. Comparison of DNA extraction methods in analysis of salivary bacterial communities. PLoS One. 2013; 8: e67699.
  • Gomes BP, Berber VB, Kokaras AS, Chen T, Paster BJ. Microbiomes of endodontic–periodontal lesions before and after chemomechanical preparation. J Endod. 2015; 41: 1975–84.
  • Kongstad J, Ekstrand K, Qvist V, Christensen LB, Cortsen B, Gronbaek M, etal. Findings from the oral health study of the Danish Health Examination Survey 2007–2008. Acta Odontol Scand. 2013; 71: 1560–9.
  • Belstrom D, Holmstrup P, Nielsen CH, Kirkby N, Twetman S, Heitmann BL, etal. Bacterial profiles of saliva in relation to diet, lifestyle factors, and socioeconomic status. J Oral Microbiol. 2014; 6: 23609. http://dx.doi.org/10.3402/jom.v6.23609.
  • Chen T, Yu WH, Izard J, Baranova OV, Lakshmanan A, Dewhirst FE. The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database (Oxford). 2010; 2010 baq013.
  • Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, etal. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci USA. 2011; 108(Suppl 1): 4516–22.
  • Hochberg Y, Benjamini Y. More powerful procedures for multiple significance testing. Stat Med. 1990; 9: 811–18.
  • Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, etal. TM4 microarray software suite. Methods Enzymol. 2006; 411: 134–93.
  • Li Y, Ge Y, Saxena D, Caufield PW. Genetic profiling of the oral microbiota associated with severe early-childhood caries. J Clin Microbiol. 2007; 45: 81–7.
  • Kononen E, Paju S, Pussinen PJ, Hyvonen M, Di TP, Suominen-Taipale L, etal. Population-based study of salivary carriage of periodontal pathogens in adults. J Clin Microbiol. 2007; 45: 2446–51.
  • Relvas M, Coelho C, Velazco HC, Ramos E. Cariogenic bacteria and dental health status in adolescents: the role of oral health behaviours. Eur J Paediatr Dent. 2014; 15: 281–7.
  • Wennerholm K, Emilson CG. Comparison of Saliva-Check Mutans and Saliva-Check IgA Mutans with the Cariogram for caries risk assessment. Eur J Oral Sci. 2013; 121: 389–93.
  • Socransky SS, Haffajee AD, Cugini MA, Smith C, Kent RL Jr. . Microbial complexes in subgingival plaque. J Clin Periodontol. 1998; 25: 134–44.
  • Parisotto TM, Steiner-Oliveira C, Silva CM, Rodrigues LK, Nobre-dos-Santos M. Early childhood caries and mutans streptococci: a systematic review. Oral Health Prev Dent. 2010; 8: 59–70.