3,345
Views
9
CrossRef citations to date
0
Altmetric
Review Articles

Metabiotics: novel idea or natural development of probiotic conception

Article: 20399 | Received 09 Jan 2013, Accepted 20 Mar 2013, Published online: 12 Apr 2013

References

  • Neish A.S . Microbes in gastrointestinal health and disease. Gastroenterology. 2009; 136: 65–80.
  • Holmes E , Li JV , Athanasiou T , Ashrafian H , Nicholson JK . Understanding the role of gut microbiome-host metabolic signal disruption in health and disease. Trends Micobiol. 2011; 19: 349–59.
  • Kinross JM , Darzi AW , Nicholson JK . Gut microbiome-host interactions in health and diseases. Genome Med. 2011; Mar. 4 3(3): 14. 10.1186/gm228.
  • Shenderov BA . Probiotics and functional foods. In Food Engineering, [Eds. UNESCO-EOLSS Joint Committee], in Encyclopedia of Life Support Systems (EOLSS). 2011; Oxford, UK: Developed under the Auspices of the UNESCO, EOLSS Publishers. Available from: http://www.eolss.net [cited 12 October 2012]..
  • Pflughoeft KJ , Versalovich J . Human microbiome in health and disease. Ann Rev Pathol Mech Dis. 2012; 7: 99–122.
  • Sanders ME , Gibson G , Gill HS , Guarner F , Gilliand SE , Klaenhammer TR , etal. Probiotics: their potential to impact human health. 2007; 20. Council for Agricultural Science and Technology (CAST) Issue Paper, CAST, Ames.
  • Reid G , Younes JA , Van der Mei HC , Gloor GB , Knight R , Busscher HJ . Microbiota restoration: natural and supplemented recovery of human microbial communities. Nat Rev Microb. 2011; 9(1): 27–38.
  • Roberfroid M , Gibson RM , Hoyles L , McCartney AL , Rastall R , Rowland I , etal. Prebiotic effects: metabolic and health benefits. Br J Nutr. 2010; 104(Suppl 2): 1–63.
  • Sanders ME , Marco ML . Food formats for effective delivery of probiotics. Ann Rev Food Sci Technol. 2010; 1: 65–85.
  • Sonnenburg JL , Fischbach MA . Community Health care: therapeutic opportunities in the human microbiome. Sci Transl Med. 2011; Apr. 13 3(78): 78ps12 10.1126/scitranslmed.3001626.
  • Bomba A , Brandeburova A , Ricanyova J , Strojny L , Chmelarova A , Szabadosova V , etal. The role of probiotics and natural bioactive compounds in modulation of the common molecular pathways in pathogenesis of atherosclerosis and cancer. Biologia. 2012; 67: 1–13.
  • Rohlke F , Surawicz C , Stollman N . Fecal flora reconstitution for recurrent Clostridium difficile infection: results and methology. J Clin Gastroenter. 2010; 44: 567–70.
  • Khoruts A , Sadowsky MJ . Therapeutic transplantation of the distal gut microbiota. Mucosal Immunol. 2011; 4: 4–7.
  • Minelli EB , Benini A . Relationship between number of bacteria and their probiotic effects. Microb Ecol Health Dis. 2008; 20: 180–3.
  • Caselli M , Vaira G , Calo G , Papini F , Holton J , Vaira D . Structural bacterial molecules as potential candidates for an evolution of the classical concept of probiotics. Adv Nutr. 2011; 2: 372–6.
  • Eckburg PB , Bik EM , Bernstein CN , Purdom E , Dethlefsen L , Sargent M , etal. Diversity of the Human Intestinal Microbial Flora. Science. 2005; 308: 1635–8.
  • Qin J , Li R , Raes J , Arumugan M , Burgdort KS , Manichanh C , etal. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010; 464: 59–65.
  • Baugher JL , Klaenhammer TR . Invited review. Application of omics tools to understanding probiotic functionality. J Dairy Sci. 2011; 94: 4753–65.
  • Shenderov BA . OMIC technologies and their importance in the modern prophylactic and regenerative medicine. Regenerative Med J. 2012; 3: 70–8. (in Russian).
  • Shenderov BA . Probiotic (symbiotic) bacterial languages. Anaerobe. 2011; 17: 490–5.
  • Van Reenen CA , Dicks LMT . Horizontal gene transfer amongst probiotic lactic acid bacteria and other intestinal microbiota: what are the possibilities? A review. Arch Microbiol. 2011; 193: 157–68.
  • Bourdichon F , Berger B , Casaregola S , Farrokh C , Frisvad JC , Gerds ML , etal. Safety Demonstration of Microbial Food Cultures in Fermented Food Products. Bulletin of the International Dairy Federation. 7–8. 455/2012.
  • Shenderov BA . The negative consequences of the probiotic functional food use. Medical Microbial Ecology and Functional Foods. 2001; III Moscow: Grants. 217–24. Probiotics and Functional Foods, in Russian.
  • Cannon JP , Lee TA , Bolanos JT , Danziger LH . Pathogenic relevance of Lactobacillus: a retrospective review of over 200 cases. Eur J Clin Microbiol Infect Dis. 2005; 24: 31–40.
  • Vesterlund S , Vankerckhoven V , Saxelin M , Goossens H , Salminen S , Ouwehand AC . Safety assessment of Lactobacillus strains: presence of putative risk factors in faecal, blood and probiotic isolates. Int J Food Microbiol. 2007; 116: 325–31.
  • Yazdankhah SP , Midtvedt T , Narvhus JA , Berstad A , Lassen J , Halvorsen R . The use of probiotics for critically ill patients in hospitals. Microb Ecol Health Dis. 2009; 21: 114–21.
  • Zein EF , Karaa S , Chemaly A , Saidi I , Daou-Chahine W , Rohban R . Lactobacillus rhamnosus septicemia in a diabetic patient associated with probiotic use: a case report. Annales de Biologie Clinique. 2008; 66: 195–8.
  • Ohishi A , Takahashi S , Ito Y , Ohishi Y , Tsukamoto K , Nanba Y , etal. Bifidobacterium septicemia associated with postoperative probiotic therapy in a neonate with omphalocele. J Pediatrics. 2010; 156: 679–81.
  • Guilherme L , Kallil J , Cunningham M . Molecular mimicry in the autoimmune pathogenesis of rheumatic heart disease. Autoimmunity. 2006; 39: 31–9.
  • Kiseleva EP , Mikhailopulo KI , Sviridov OV , Novik GI , Knirel YA , Dey ES . The role of components of Bifidobacterium and Lactobacillus in pathogenesis and serologic diagnosis of autoimmune thyroid diseases. Benef Microbes. 2011; 2: 139–54.
  • Prangli AL , Utt M , Talja I , Sepp E , Mikelsaar M , Rajasalu T , etal. Antigenic proteins of Lactobacillus acidophilus that are recognized by serum IgG antibodies in children with type 1 diabetes and celiac diseases. Pediatr Allergy Immunol. 2010; 21: 772–9.
  • Berer K , Mues M , Koutrolos M , Rasbi ZA , Boziki M , Johner C , etal. Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination. Nature. 2011; 479: 538–41.
  • Glushanova NA , Shenderov BA . Interaction of probiotic and host indigenous lactobacilli during combined cultivation in vitro. Zh. Mikrobiol. (Moscow). 2005; N2: 75–9. (in Russian).
  • Shenderov BA , Glushanova NA . Experimental substantiation of new approaches to intestinal microbial ecology correction by means of probiotics. Microb Ecol Health Dis. 2006; 18: 93–4.
  • Yazdankhah SP , Narvhus JA , Eggesbo M , Midtvedt T , Lassen J , Halvorsen R . Should long-term prophylactic use of probiotics for infants and young children give cause for concern?. Microb Ecol Health Dis. 2008; 20: 171–6.
  • Shenderov BA . Changes of drug and other compounds pharmacokinetics and biotransformation. Medical Microbial Ecology and Functional Foods. 1998; Moscow: Grants. 339–51. V. II. Social – ecological and clinical consequences of microecological disbalance in humans and animals, (in Russian).
  • Nicholson JK , Holmes E , Wilson ID . Gut microorganisms, mammalian metabolism and personalized health care. Nat Rev Microbiol. 2005; 3: 431–8.
  • Clayton TA , Baker D , Lindon JC , Everett JR , Nicholson JK . Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism. Proc Natl Acad Sci USA. 2009; 106: 14728–33.
  • Di Caro S , Tao H , Grillo A , Elia C , Gasbarrini G , Sepulveda AR , etal. Effects of Lactobacillus GG on gene expression pattern in small bowel mucosa. Dig Liver Dis. 2005; 37: 320–9.
  • Society for General Microbiology. Cancer-causing gut bacteria exposed. ScienceDaily. 2008; September. 22 Available from http://www.sciencedaily.com/releases/2008/09/080921201716.htm [cited 3 September 2012]..
  • Yuan J , Wang B , Sun Z , Bo X , Yuan X , He X , etal. Analysis of host-inducing proteome changes in Bifidobacterium longum NCC2705 grown in vivo. J Proteome Res. 2008; 7: 375–85.
  • Bron PA , Grangette C , Mercenier A , de Vos WM , Kleerebezem M . Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J Bacteriol. 2004; 186: 5721–9.
  • Dc Vries MC . Analyzing global gene expression of Lactobacillus plantarum in the human gastro-intestinal tract. 2006; Wageningen, the Netherlands: Wageningen University. Thesis.
  • Chang G , Shi Y , Le G , Xu Z , Sun J , Li J . Effects of Lactobacillus plantarum of genes expression pattern in mice jejunal Peyer's patches. Cell Immunol. 2009; 258: 1–8.
  • Van Baarlen P , Troost F , van der Meer C , Hooiveld G , Boekschoten M , Brummer RJ , etal. Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways. Proc Natl Acad Sci USA. 2011; 108(Suppl 1): 4562–9.
  • Sommer MO , Church GM , Dantas G . The human microbiome harbors a diverse reservoir of antibiotic resistance genes. Virulence. 2010; 1: 299–303.
  • Thomas CM , Nielsen KM . Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Microbiol. 2005; 3: 711–21.
  • Shenderov BA . Gut indigenous microbiota and epigenetics. Microb Ecol Health Dis. 2012; 23: 17195.
  • Ishikawa K , Handa N , Sears L , Raleigh EA , Kobayashi I . Cleavage of a model DNA replication fork by a methyl-specific endonuclease. Nucl Acids Res. 2011; 39: 5489–98.
  • Nougayrede JP , Homburg S , Taieb F , Boury M , Brzuszkiewicz E , Gottschalk G , etal. Escherichia coli induces DNA double-strand breaks in eukaryotic cells. Science. 2006; 313: 848–51.
  • Arthur JC , Perez-Chanona E , Muhlbauer M , Tomkovich S , Uronis JM , Fan T-J , etal. Intestinal inflammation targets cancer-inducing activity of the microbiota. Science. 2012; 338: 120–3.
  • Huyckel MM , Abrams V , Moore DR . Enterococcus faecalis produces extracellular superoxide and hydrogen peroxide that damages colonic epithelial cell DNA. Carcinogenesis. 2002; 23: 529–36.
  • Helminen A , Nummi K , Salaspuro M , Vakevainen S . High concentration of carcinogenic acetaldehyde in fermented dairy products with and without probiotics. 2011; June. 14–16 Kosice, Slovakia: Proceeding of the International Scientific Conference on Probiotics and Prebiotics. 89–90. Available from: www.probiotic-conference.net .
  • Nummi KP , Helminen PA , Salaspuro M , Vakevainen S . Ethanol concentration of probiotic and basic dairy products – a potential risk for upper digestive tract cancer. 2011; June. 14–16 Kosice, Slovakia: Proceeding of the International Scientific Conference on Probiotics and Prebiotics. 107–8. Available from: www.probiotic-conference.net .
  • Lebeer S , Vanderleyden J , De Keersmaecker SCJ . Host interactions of probiotic bacterial surface molecules: comparison with commensals and pathogens. Natl Rev Microbiol. 2010; 8: 171–84.
  • Lebeer S , Vanderleyden J , De Keersmaeker SCJ . Genes and molecules of lactobacilli supporting probiotic action. Microbiol Mol Biol Rev. 2008; 72: 728–64.
  • Osipov GA , Verkhovtseva NV . Study of human microecology by mass-spectrometry of microbial markers. Benef Microbes. 2011; 2: 63–78.
  • Osipov GA , Boiko NB , Fedosova NF , Kasikhina SA , Lyadov KV . Comparative gas chromatography-mass spectrometry study of the composition of microbial chemical markers in feces. Microb Ecol Health Dis. 2009; 21: 159–71.
  • Goldfine H . The appearance, disappearance and reappearance of plasmalogens in evolution. Prog Lipid Res. 2010; 49: 493–8.
  • Shenderov BA , Ivanova Ja V , Sorokina IM . Composite additive. Patent RU 2397246 C1, 1–10; 2010 (in Russian).
  • Li J , Wang W , Xu SX , Magarvey NA , Mc Cormick JK . Lactobacillus reuteri-produced cyclic dipeptides quench agr-mediated expression of toxic shock syndrome toxin-1 in staphylococci. Proc Natl Acad Sci USA. 2011; 108: 3360–5.
  • Fukuda S , Toh H , Hase K , Oshima K , Nakanishi Y , Yoshimura K , etal. Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature. 2011; 469: 543–7.
  • Shenderov BA . Modern condition and prospective host microecology investigations. Microb Ecol Health Dis. 2007; 19: 145–9.
  • Shenderov BA , Manvelova MA , Stepanchuk JB , Skiba H . Probiotics and functional nutrition. Antibiot Chemother. 1997; 42: 30–4. (in Russian).
  • Vahitov TYa , Petrov LN . Regulatory functions of bacterial exometabolites. Microbiology (Russ Trans). 2006; 75: 415–9.
  • Vahitov TYA , Petrov LN , Bondarenko VM . Concept of a probiotic preparation containing original microbial metabolites. Zh Microbiol (Moscow). 2005; 108–114. (in Russian).
  • Ng SC , Hart AL , Kamm MA , Stagg AJ , Knight SC . Mechanisms of action of probiotics: recent advances. Inflamm Bowel Dis. 2009; 15: 300–10.
  • Wikoff WR , Anfora AT , Liu J , Schultz PG , Lesley SA , Peters EC , etal. Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites. Proc Natl Acad Sci USA. 2009; 106(10): 3698–703.
  • Beloborodova NV , Osipov GA . Small molecules originating from microbes (SMOM) and their role in microbes-host relationship. Microbial Ecol Health Dis. 2000; 12: 12–21.
  • Li M , Wang B , Zhang M , Rantalainen M , Wang S , Zhou H , etal. Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl Acad Sci USA. 2008; 105: 2117–22.
  • Belousova EF , Nikitina YV , Mishurovskaya NC , Zlatkina AR . Possibilities of microbial metabolite preparations for intestinal microbiota restoration. Consilium Medicum. 2005; 7: 9–13. (in Russian).
  • Roda A , Simoni P , Magliulo M , Nanni P , Baraidini M , Roda G , etal. A new oral formulation for the release of sodium butyrate in the ileo–cecal region and colon. World J Gastroenterol. 2007; 13: 1079–84.
  • Tsuda T , Tsuda M , Yamamura M , Ohnishi N . Regulation of appetite and gastrointestinal microflora. J Germfree Life Gnotobiol. 1992; 22: 23–5.
  • Sawada H , Furushiro M , Hirai K , Motoike M , Watanabe T , Yokokura T . Purification and characterization of an antihypertensive compound from Lactobacillus casei. Agric Biol Chem. 1990; 54: 3211–9.
  • Beider C , Flambard B . Dairy for heart health. World Food Ingredients. 2003; 24–6.
  • Nakamura Y . Studies on anti-hypertensive peptides in milk fermented with Lactobacillus helveticus . Biosci Microflora. 2004; 23: 131–8.
  • Nakamura Y , Bando I , Mennear JY , Bernard BK . Studies of toxicological potential of tripeptides: IV. Assessment of the repeated-dose toxicological potential of synthesized L-valyl-L-prolyl-L-proline in male and female rats and dogs. Int J Toxicol. 2005; 24: 25–39.
  • Volkov MYU , Tkachenko EI , Vorobeichikov EV , Sinitsa AV . Bacillus subtilis metabolites as a novel promising probiotic preparations. Zh Mikrobiol. (Moscow). 2007; N2: 75–80. (in Russian).
  • Babin VN , Minushkin ON , Dubinin AV , Domoradsky IV , Kondrakova OA , Ardatskaya MD . Molecular aspects of symbiosis in host-microflora system. Russian J Gastroent Hepatol Coloproctol. 1998; 8: 76–82. (in Russian).
  • Lakhtin VM , Lakhtin MV , Cherepanova Yu V , Afanasyev SS , Aleshkin VA . High molecular weight biosurfactants from human gram-positive bacteria. Clin Lab Diagnostic. 2010; N9: 37–8. (in Russian).
  • Shenderov BA , Lakhtin VM . Lectins are novel potential category of physiologically active functional food ingredients. Regenerative Med J. 2004; 1: 33–8. (in Russian).
  • Lakhtin V , Lakhtin MV , Pospelova VV , Shenderov BA . Lectins of lactobacilli and bifidobacteria. II. Probiotic lectins of lactobacilli and bifidobacteria as possible signal molecules regulating inter- and intrapopulation relationships between bacteria and between bacteria and the host. Microb Ecol Health Dis. 2007; 19: 153–7.
  • Bishop RE . The bacterial lipocalins. Biochem Biophys Acta. 2000; 1482: 73–83.
  • Sanchez D , Ganfornina MD , Gutierrez G , Marin A . Exon-intron structure and evolution of the lipocalin gene family. Mol Biol Evol. 2003; 20: 775–83.