LITERATURE CITED
- Barr ME, Rogerson CT, Smith SJ, Haines JH. 1986. An annotated catalog of the Pyrenomycetes described by Charles H. Peck. New York State Mus Bull 459:1–74.
- Chaverri P, Castlebury LA, Overton BE, Samuels GJ. 2003. Hypocrea/Trichoderma species with conidiophore elongations and green conidia. Mycologia 95:1100–1140.
- ———, Samuels GJ, Stewart EL. 2001. Hypocrea virens sp. nov., the teleomorph of Trichoderma virens. Mycologia 93:1113–1124.
- Doi Y. 1972. Revision of the Hypocreales with cultural observations IV. The genus Hypocrea and its allies in Japan. (2) Enumeration of the species. Bull Nat Sci Mus (Tokyo) 15:649–751.
- ———. 1978. Revision of Hypocreales with cultural observations XI. Additional notes on Hypocrea and its allies in Japan (1). Bull Nat Sci Mus Ser B 4:19–26.
- ———, Yamatoya K. 1989. Hypocrea pallida and its allies (Hypocreaceae). Mem New York Bot Gard 49:233–242.
- Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes—application to the identification of mycorrhizae and rusts. Mol Ecol 2:113–118.
- Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755.
- Jaklitsch WM, Komon M, Kubicek CP, Druzhinina IS. 2005. Hypocrea voglmayrii sp. nov. from the Austrian Alps represents a new phylogenetic clade in Hypocrea/ Trichoderma. Mycologia 97:1365–1378.
- ———, ———, ———, ———. 2006. Hypocrea crystalligena sp. nov., a common European species with a white-spored Trichoderma anamorph. Mycologia 98: 499–513.
- Katoh K, Kuma K, Toh H, Miyata T. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nuc Acid Res 33:511–518.
- Kornerup A, Wanscher JH. 1981. Taschenlexikon der Farben. Zürich-Göttingen: Muster-Schmidt Verlag.
- Liu YL, Whelen S, Hall BD. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16:1799–1808.
- Mercuri OA, Ranalli ME. 1977 [1976]. Estudio systemático y biológico de Hypocreales (Ascomycetes) de Argentina I. Protocrea latissima sp. nov. estudios de cultivo. Physis (Buenos Aires) 35:303–317.
- Moravec Z. 1956. Arachnocrea, un genre nouveau de la famille des Nectriaceae. Bull Soc mycol Fr 72:160–166.
- Nicholas KB, NicholasJrHB, Deerfield II DW. 1997. Gene-Doc: analysis and visualization of genetic variation. EMBNET News 4:1–4. Program distributed by the authors.
- Nylander JAA. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
- Overton BE, Stewart EL, Geiser DM, Jaklitsch WM. 2006a. Systematics of Hypocrea citrina and related taxa. Stud Mycol 56:1–38.
- ———, Stewart EL, Geiser DM. 2006b. Taxonomy and phylogenetic relationships of nine species of Hypocrea with anamorphs assignable to Trichoderma section Hypocreanum. Stud Mycol 56:39–65.
- Petch T. 1937. Notes on British Hypocreaceae III. J Bot 75: 217–230.
- ———. 1938. British Hypocreales. Trans Br Mycol Soc 21: 243–305.
- Põldmaa K. 1999. The genus Hypomyces and allied fungicolous fungi in Estonia I. Species growing on aphyllophoralean basidiomycetes. Folia Cryptog Estonica 34:15–31.
- ———. 2000. Generic delimitation of the fungicolous Hypocreaceae. Stud Mycol 45:83–94.
- ———, Larsson E, Kõljalg U. 1999. Phylogenetic relationships in Hypomyces and allied genera, with emphasis on species growing on wood-decaying homobasidiomycetes. Can J Bot 77:1756–1768.
- ———, Samuels GJ. 2004. Fungicolous Hypocreaceae (Ascomycota: Hypocreales) from Khao Yai National Park, Thailand. Sydowia 56:79–130.
- Rehner SA, Samuels GJ. 1994. Taxonomy and phylogeny of Gliocladium analyzed by large subunit rDNA sequences. Mycol Res 98:625–634.
- Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574.
- Rossman AY, Samuels GJ, Rogerson CT, Lowen R. 1999. Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42:1–248.
- Samuels GJ, Dodd S, Lu B-S, Petrini O, Schroers H-J, Druzhinina IS. 2006. The Trichoderma koningii aggregate species. Stud Mycol 56:67–133.
- Schroers H-J, Samuels GJ, Seifert KA, Gams W. 1999. Classification of the mycoparasite Gliocladium roseum in Clonostachys as C. rosea, its relationship to Bionectria ochroleuca, and notes on other Gliocladium-like fungi. Mycologia 91:365–385.
- Seifert KA. 1985. A monograph of Stilbella and some allied hyphomycetes. Stud Mycol 27:1–235.
- Sung G-H, Hywel-Jones NL, Sung J-M, Luangsa-ard JJ, Shrestha B, Spatafora JW. 2007. Phylogenetic classification of Cordyceps and the clavicipitaceous fungi. Stud Mycol 57:5–59.
- Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods), Version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
- Werle E, Schneider C, Renner M, Völker M, Fiehn W. 1994. Convenient single-step, one tube purification of PCR products for direct sequencing. Nuc Acid Res 22:4354–4355.
- White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315–322.
- Yaguchi T, Someya A, Udagawa S-i. 1997. Isolation of Roumegueriella rufula as a new record from East Asia. Mycoscience 38:83–85.
- Yao Y-J, Pegler DN, Chase MW. 1999. Application of ITS (nrDNA) sequences in the phylogenetic study of Tyromyces s.l. Mycol Res 103:219–229.
- Zhang N, Castlebury LA, Miller AN, Huhndorf SM, Schoch CL, Seifert KA, Rossman AY, Rogers JD, Kohlmeyer J, Volkmann-Kohlmeyer B, Sung G-H. 2006. An overview of the systematics of the Sordar-iomycetes based on a four-gene phylogeny. Mycologia 98:1076–1087.